TCONS_00001852-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001852-protein
Unique NameTCONS_00001852-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001852-protein ID=TCONS_00001852-protein|Name=TCONS_00001852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MYGHFQQQPAQQMRPELLQEVKLYSNAREREKFDNMAELFAVINTLQHLE
KAYIKDAIHPKEYTAACSKLLVQYKAAFKQVQSADFPTVEAFTKIYRLDC
PAALERIREDRPITIKDDAGNTSKSIANIVERFITIMDRLRLQIRAKDEI
HPDLEDLKLTMDRLSMLSDDFEGKVAVQKWLDTLSEMRAHDELDEEQVRQ
MIFDIEQSYYAFNRLLQHT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000979XLOC_000979Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001852TCONS_00001852Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007143VPS28
IPR017899VPS28_C
IPR017898VPS28_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007143Vacuolar protein sorting-associated, VPS28PIRSFPIRSF017535ESCRT1_Vps28coord: 6..217
e-value: 8.3E-74
score: 245.5
IPR007143Vacuolar protein sorting-associated, VPS28PFAMPF03997VPS28coord: 36..216
e-value: 3.5E-66
score: 222.4
IPR017899Vacuolar protein sorting-associated, VPS28, C-terminalPROSITEPS51310VPS28_Ccoord: 121..217
score: 38.058
IPR017898Vacuolar protein sorting-associated, VPS28, N-terminalPROSITEPS51313VPS28_Ncoord: 10..117
score: 32.512
NoneNo IPR availableSUPERFAMILY140427VPS28 C-terminal domain-likecoord: 122..216
NoneNo IPR availableSUPERFAMILY140111Endosomal sorting complex assembly domaincoord: 13..109

Blast
[Close]
BLAST of TCONS_00001852-protein vs. Swiss-Prot (Human)
Match: VPS28 (Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.318e-98
Identity = 132/204 (64.71%), Postives = 164/204 (80.39%), Query Frame = 0 
Query:   14 RPELLQEVKLYSNAREREKFDNMAELFAVINTLQHLEKAYIKDAIHPKEYTAACSKLLVQYKAAFKQVQSADFPTVEAFTKIYRLDCPAALERIREDRPITIKDDAGNTSKSIANIVERFITIMDRLRLQIRAKDEIHPDLEDLKLTMDRLSMLSDDFEGKVAVQKWLDTLSEMRAHDELDEEQVRQMIFDIEQSYYAFNRLLQ 217
            +PEL +EVKLY NAREREK+DNMAELFAV+ T+Q LEKAYIKD + P EYTAACS+LLVQYKAAF+QVQ ++  +++ F + +RLDCP A+ERI+EDRPITIKDD GN ++ IA++V  FIT+MD+LRL+IRA DEI PDL +L  TM R+S L  DFEG+  V +WL TLS M A DELD+ QVRQM+FD+E +Y AFNR L 
Sbjct:   17 KPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220
The following BLAST results are available for this feature:
BLAST of TCONS_00001852-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VPS282.318e-9864.71Vacuolar protein sorting-associated protein 28 hom... [more]
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