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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001852 ID=TCONS_00001852|Name=TCONS_00001852|organism=Clytia hemisphaerica|type=transcript|length=3793bpRun BLAST on NCBI protein sequence of TCONS_00001852-protein >TCONS_00001852-protein ID=TCONS_00001852-protein|Name=TCONS_00001852-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp MYGHFQQQPAQQMRPELLQEVKLYSNAREREKFDNMAELFAVINTLQHLERun BLAST on NCBI transcript from alignment at sc0000012:986574..1002167+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001852 ID=TCONS_00001852|Name=TCONS_00001852|organism=Clytia hemisphaerica|type=transcript|length=15594bp|location=Sequence derived from alignment at sc0000012:986574..1002167+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000012:986574..1002167+ >TCONS_00001852 ID=TCONS_00001852|Name=TCONS_00001852|organism=Clytia hemisphaerica|type=CDS|length=5940bp|location=Sequence derived from alignment at sc0000012:986574..1002167+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001852 vs. Swiss-Prot (Human)
Match: VPS28 (Vacuolar protein sorting-associated protein 28 homolog OS=Homo sapiens GN=VPS28 PE=1 SV=1) HSP 1 Score: 285.034 bits (728), Expect = 1.299e-87 Identity = 133/208 (63.94%), Postives = 165/208 (79.33%), Query Frame = 3
Query: 1074 AQQMRPELLQEVKLYSNAREREKFDNMAELFAVINTLQHLEKAYIKDAIHPKEYTAACSKLLVQYKAAFKQVQSADFPTVEAFTKIYRLDCPAALERIREDRPITIKDDAGNTSKSIANIVERFITIMDRLRLQIRAKDEIHPDLEDLKLTMDRLSMLSDDFEGKVAVQKWLDTLSEMRAHDELDEEQVRQMIFDIEQSYYAFNRLLQ 1697
A +PEL +EVKLY NAREREK+DNMAELFAV+ T+Q LEKAYIKD + P EYTAACS+LLVQYKAAF+QVQ ++ +++ F + +RLDCP A+ERI+EDRPITIKDD GN ++ IA++V FIT+MD+LRL+IRA DEI PDL +L TM R+S L DFEG+ V +WL TLS M A DELD+ QVRQM+FD+E +Y AFNR L
Sbjct: 13 APGNKPELYEEVKLYKNAREREKYDNMAELFAVVKTMQALEKAYIKDCVSPSEYTAACSRLLVQYKAAFRQVQGSEISSIDEFCRKFRLDCPLAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSHLPPDFEGRQTVSQWLQTLSGMSASDELDDSQVRQMLFDLESAYNAFNRFLH 220 The following BLAST results are available for this feature:
BLAST of TCONS_00001852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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