TCONS_00001557-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001557-protein
Unique NameTCONS_00001557-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001557-protein ID=TCONS_00001557-protein|Name=TCONS_00001557-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
DSNHRPFTERRNTFFGIVDAVPKNFSKLNNKMQTIKCVVVGDGAVGKTCL
LISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP
LSYPQTDVFLVCFSVVAPASFENVKEKWVPEITHHCPKTPFLLVGTQVDL
RDDAAIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVF
DEAILAALEPPEQPKKKKCVLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000816XLOC_000816Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001557TCONS_00001557Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 58..74
score: 30.16
coord: 137..150
score: 39.37
coord: 185..207
score: 29.37
coord: 35..56
score: 49.32
coord: 75..97
score: 41.87
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 35..210
e-value: 2.2E-13
score: 57.3
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 32..210
e-value: 4.4E-17
score: 72.8
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 40..221
e-value: 0.007
score: -6.9
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 37..210
e-value: 1.5E-129
score: 446.3
NoneNo IPR availableGENE3D3.30.70.1390coord: 33..97
e-value: 3.0E-21
score: 74.7
NoneNo IPR availableGENE3D3.40.50.300coord: 98..208
e-value: 9.6E-29
score: 98.9
NoneNo IPR availableCDDcd01874Cdc42coord: 34..208
e-value: 1.57475E-132
score: 372.284
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 36..206
e-value: 6.9E-54
score: 181.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 32..188
e-value: 9.8E-43
score: 143.7
IPR003578Small GTPase superfamily, Rho typePROSITEPS51420RHOcoord: 28..207
score: 27.758
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 34..204

Blast
[Close]
BLAST of TCONS_00001557-protein vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 361.303 bits (926), Expect = 6.509e-129
Identity = 173/191 (90.58%), Postives = 182/191 (95.29%), Query Frame = 0 
Query:   32 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVAPASFENVKEKWVPEITHHCPKTPFLLVGTQVDLRDDAAIVEKLAKTKQKPISFEQGEKLARELKAVKYVECSALTQKGLKNVFDEAILAALEPPEQPKKKKCVLL 222
            MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV+P+SFENVKEKWVPEITHHCPKTPFLLVGTQ+DLRDD + +EKLAK KQKPI+ E  EKLAR+LKAVKYVECSALTQKGLKNVFDEAILAALEPPE  K ++CVLL
Sbjct:    1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL 191
The following BLAST results are available for this feature:
BLAST of TCONS_00001557-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC426.509e-12990.58Cell division control protein 42 homolog OS=Homo s... [more]
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