TCONS_00001543-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001543-protein
Unique NameTCONS_00001543-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001543-protein ID=TCONS_00001543-protein|Name=TCONS_00001543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MRSFIEDLQSNNWFSIKIIFLATLTAISSGTVLFINALVAPDLQCEWGLT
TFEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISA
ASQSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVY
TFGSLFSIGFSYWTLNNYGWRIYTLAVISPTIILLYFMIAYLPESIRFLQ
AQGRTSEALEVIKDACKTTKTALTKDMDLLNMNSNAPGKTQDSGYIQVLS
KHWIKIFGLSFFGVPMFLSFYGLPFFIEYKLQHAXIAVISPAIILLYFMI
AYLPESIRFLQSQGRTSEALEVIKDACKTTKTALTKEMDLLNMNSDAPSK
TEDSGYFQVLSKHWINIFGLSFYGVPMFLSFYGLPFFIEYKLQHATCTLI
VNETISPKCVPLTNGEILRSFFINLGYLPGAFIGYFMAEKIGRKILLNTT
TGLLAVCYISQLICLPNAINYFLLFLSSGMSLSATCFIVLYAAELFPTNV
RMTSTGIAASVWKICSILSPVLFQHLIYTNTTFVIVLMSAWSIVGALGLC
PLPETLGHGLKEF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000802XLOC_000802Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001543TCONS_00001543Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 342..563
e-value: 2.5E-16
score: 59.0
NoneNo IPR availableGENE3D1.20.1250.20coord: 10..209
e-value: 5.1E-25
score: 87.4
IPR005828Major facilitator, sugar transporter-likePFAMPF00083Sugar_trcoord: 289..562
e-value: 4.1E-7
score: 29.1
coord: 51..227
e-value: 5.5E-23
score: 81.4
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 18..557
score: 22.798
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 19..193
e-value: 1.29571E-16
score: 78.8949
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 11..279
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 285..560

Blast
BLAST of TCONS_00001543-protein vs. Swiss-Prot (Human)
Match: SV2B (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.520e-21
Identity = 125/602 (20.76%), Postives = 232/602 (38.54%), Query Frame = 0
Query:    5 IEDLQSNNWFSIKIIFLATLTAISSGTVLFINALVAPDLQCEWGLTTFEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISAASQSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVYTFGSLFSIGFSYWTLNNYG-------------WRIYTLAVISPTIILLYFMIAYLPESIRFLQAQGRTSEALEVIKDACKTTKTALTKDMDLLNM-NSNAPGKTQDSGYIQVLSKHWIKIFGLSFFGVPMFLSFYGLPFFI---EYKLQHAXIAVISPAIILLYF-MIAYLPESIRFLQSQGRTSEALEVIKDACKTTKTALTKEMDLLNMNSDAPSKTEDSGYFQVLSKHWINIFGLSFYGVPMFLSFYGLPFFIE--------------YKLQHATCTLIVNETISPKCVPLTNGEILRSFFI-------NLGYLPGAFIGYFMAEKIGRKILLNTTTGLLAVCYISQLICLPNAINYFLLFLSS------------GMSLSATCFIVLYAAELFPTNVRMTSTGIAASVWKICSILSPVLFQHLIYTNTTFVIVLMSAWSIVGALGLCPLPET 555
            I D   +  F   + F+  L  ++ G  +F+ +   P  + +  L++ +   + +  Y G   G++  G +AD  GRK  L  S      F  +S+  Q +  +L  R   G G  G+  +   Y +EF      G+ + W    +  G L++   ++  + +YG             WR++ +    P  + +   + ++PES RFL   G+  EA  ++K    T   A      +  + N   P +  +   IQ  +  W + + + F    +F   +    +     Y++    +AV+  A+   Y+ +  + P+ IR+ Q +   S+      +         T E  +         K  +  + ++  KH   +F  +F+    F        + +              Y+ +   C  I +  +  K     + E    F I       +L  LPG  I   + ++IGR  ++  +  + AVC      C      +FL F +S            G S++A   + +   EL+PTN R T+ GI   + K  +IL   +F   +       I+L +A  + G L    LPET
Sbjct:   98 IMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVSM-VALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRF--KTIFKQVWDNALYCVMGPYRMNTLILAVVWFAMAFSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVYGATINFTMENQI-----HQHGKLVNDKFTRMYFKH--VLFEDTFFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYEHKFINCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVC------C------FFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPET 677          
The following BLAST results are available for this feature:
BLAST of TCONS_00001543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SV2B7.520e-2120.76Synaptic vesicle glycoprotein 2B OS=Homo sapiens G... [more]
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