TCONS_00001543 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001543
Unique NameTCONS_00001543
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2092

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001543 ID=TCONS_00001543|Name=TCONS_00001543|organism=Clytia hemisphaerica|type=transcript|length=2092bp
AAACATTGTTCGGGACGTaaaaattttattcaatttattgTAGAACTAAC
TAGaggaaaattctaaataaatataaaaaataaataataacatTTCCAGT
TAACGAATTTAAAACATAACTGACTTGATTGTAATGTCAATAGCTGTAAT
ATTAATGTCAAAATTCCTTCAAGCCATGTCCAAGAGTTTCTGGTAAAGGA
CAAAGTCCAAGGGCTCCAACAATGCTCCAAGCACtcattaaaacaataac
aaaagtCGTATTTGTGTAAATCAAATGTTGAAACAATACAGGTGACAAGA
TGCTGCAGATTTTCCATACTGAGGCAGCTATACCTGTAGAAGTCATTCGA
ACATTCGTTGGGAATAATTCCGCCGCGTACAACACTATAAAACAAGTAGC
TGAAAGTGACATACCAGATGATAGAAACAACAAGAAGTAATTGATAGCGT
TAGGTAAGCATATTAACTGACTGATATAACAAACAGCTAATAAGCCAGTT
GTAGTGTTCAGTAATATTTTACGCCCAATTTTCTCCGCCATAAAATAACC
GATAAATGCGCCAGGTAGATAACCAAGGTTAATGAAAAATGAACGTAAGA
TCTCCCCATTAGTAAGAGGAACACATTTTGGGGAAATTGTCTCGTTTACA
ATCAACGTACACGTTGCATGCTGAAGTTTATATTCAATGAAAAAAGGTAA
ACCgtaaaaacttaagaacatgGGTACTCCATAGAACGAAAGCCCAAAAA
TATTGATCCAGTGTTTTGATAGGACTTGGAAATAGCCCGAATCCTCTGTT
TTGCTAGGTGCATCAGAGTTCATATTTAATAGATCCATTTCTTTTGTCAA
AGCAGTTTTGGTAGTTTTACAGGCATCTTTTATCACTTCAAGAGCTTCTG
AAGTACGTCCTTGAGATTGTAAAAATCGTATCGATTCAGGAAGATAAGCA
ATCATGAAATAAAGTAATATTATAGCTGGTGATATCACTGCTATNCTTGC
ATGCTGAAGTTTATATTCAATGAAAAACGGTAAACcgtaaaaacttaaaa
acatgGGTACACCGAAAAACGAAAGCCCGAAAATCTTAATCCAGTGTTTT
GATAGGACTTGGATATAGCCCGAATCCTGTGTTTTGCCAGGTGCATTAGA
GTTCATATTTAATAAATCCATGTCTTTTGTTAAAGCAGTTTTGGTAGTTT
TACAGGCATCTTTTATCACTTCAAGAGCTTCTGAAGTGCGCCCTTGAGCT
TGTAAAAATCGTATCGACTCAGGAAGATAAGCAATCATGAAATAAAGTAA
AATTATGGTTGGTGATATCACTGCTAGAGTGTAGATTCTCCATCCATAAT
TGTTCAAAGTCCAATAAGAGAAACCAATCGAAAATAAACTACCAAAGGTG
TAGACGAAATTGTACCAAAACACAGCTTTACCGTGATCCGTGCTTTTCGT
GAACTCCGTGTTATATATCACGGTTAAGAGGAAGGACCCAGCGAATCCAG
CACCAACAAAGAATCGCAATAAAAGATAAATATGAAAAGATTGACTAGCT
GCTGATATAAGGACAAAATATAACATCGAGCCTGTGGACGCAATTAACGT
GTTTTTACGTCCATAAATGTCAGCAATTCGGCCCCAATACCACGAACCAA
AGGCTTCGCCAGCATAAAAAGCAATTGAAATAGATGTCACTTCAAATGTC
GTTAAACCCCATTCACATTGCAAGTCCGGAGCAACCAATGCGTTTATAAA
TAGAACAGTTCCAGAGGAGATAGCTGTTAAGGTAGCCAAGAATATAATCT
TTATTGAAAACCAATTGTTCGATTGCAAGTCCTCTATGAAACTTCTCATG
ATTTCTTTTTAGTTTACAACCACCAAACCTCACAACTCAATATTATTCTC
GATTTTTCTACATTTGTCCAAACATTTCACATCtcgataacgaaaatcat
aTACAAGCTGCAAATCTCTTATCTTAAATAACACATCGCAAAGAGAaaat
aaattaatgtaaatgCACTTTTCTTATTAAGACACGTTGGCATGAAAAcc
cataatttcaaaaaagtcggAAAAGCAATTATAAATGTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00001543-protein

>TCONS_00001543-protein ID=TCONS_00001543-protein|Name=TCONS_00001543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MRSFIEDLQSNNWFSIKIIFLATLTAISSGTVLFINALVAPDLQCEWGLT
TFEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISA
ASQSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVY
TFGSLFSIGFSYWTLNNYGWRIYTLAVISPTIILLYFMIAYLPESIRFLQ
AQGRTSEALEVIKDACKTTKTALTKDMDLLNMNSNAPGKTQDSGYIQVLS
KHWIKIFGLSFFGVPMFLSFYGLPFFIEYKLQHAXIAVISPAIILLYFMI
AYLPESIRFLQSQGRTSEALEVIKDACKTTKTALTKEMDLLNMNSDAPSK
TEDSGYFQVLSKHWINIFGLSFYGVPMFLSFYGLPFFIEYKLQHATCTLI
VNETISPKCVPLTNGEILRSFFINLGYLPGAFIGYFMAEKIGRKILLNTT
TGLLAVCYISQLICLPNAINYFLLFLSSGMSLSATCFIVLYAAELFPTNV
RMTSTGIAASVWKICSILSPVLFQHLIYTNTTFVIVLMSAWSIVGALGLC
PLPETLGHGLKEF
Run BLAST on NCBI

transcript from alignment at sc0000010:889290..891381

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001543 ID=TCONS_00001543|Name=TCONS_00001543|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0000010:889290..891381 (Clytia hemisphaerica)
CAAGACATTTATAATTGCTTTTccgacttttttgaaattatgggTTTTCA
TGCCAACGTGTCTTAATAAGAAAAGTGcatttacattaatttatttTCTC
TTTGCGATGTGTTATTTAAGATAAGAGATTTGCAGCTTGTAtatgatttt
cgttatcgaGATGTGAAATGTTTGGACAAATGTAGAAAAATCGAGAATAA
TATTGAGTTGTGAGGTTTGGTGGTTGTAAACTAAAAAGAAATCATGAGAA
GTTTCATAGAGGACTTGCAATCGAACAATTGGTTTTCAATAAAGATTATA
TTCTTGGCTACCTTAACAGCTATCTCCTCTGGAACTGTTCTATTTATAAA
CGCATTGGTTGCTCCGGACTTGCAATGTGAATGGGGTTTAACGACATTTG
AAGTGACATCTATTTCAATTGCTTTTTATGCTGGCGAAGCCTTTGGTTCG
TGGTATTGGGGCCGAATTGCTGACATTTATGGACGTAAAAACACGTTAAT
TGCGTCCACAGGCTCGATGTTATATTTTGTCCTTATATCAGCAGCTAGTC
AATCTTTTCATATTTATCTTTTATTGCGATTCTTTGTTGGTGCTGGATTC
GCTGGGTCCTTCCTCTTAACCGTGATATATAACACGGAGTTCACGAAAAG
CACGGATCACGGTAAAGCTGTGTTTTGGTACAATTTCGTCTACACCTTTG
GTAGTTTATTTTCGATTGGTTTCTCTTATTGGACTTTGAACAATTATGGA
TGGAGAATCTACACTCTAGCAGTGATATCACCAACCATAATTTTACTTTA
TTTCATGATTGCTTATCTTCCTGAGTCGATACGATTTTTACAAGCTCAAG
GGCGCACTTCAGAAGCTCTTGAAGTGATAAAAGATGCCTGTAAAACTACC
AAAACTGCTTTAACAAAAGACATGGATTTATTAAATATGAACTCTAATGC
ACCTGGCAAAACACAGGATTCGGGCTATATCCAAGTCCTATCAAAACACT
GGATTAAGATTTTCGGGCTTTCGTTTTTCGGTGTACCcatgtttttaagt
ttttacgGTTTACCGTTTTTCATTGAATATAAACTTCAGCATGCAAGNAT
AGCAGTGATATCACCAGCTATAATATTACTTTATTTCATGATTGCTTATC
TTCCTGAATCGATACGATTTTTACAATCTCAAGGACGTACTTCAGAAGCT
CTTGAAGTGATAAAAGATGCCTGTAAAACTACCAAAACTGCTTTGACAAA
AGAAATGGATCTATTAAATATGAACTCTGATGCACCTAGCAAAACAGAGG
ATTCGGGCTATTTCCAAGTCCTATCAAAACACTGGATCAATATTTTTGGG
CTTTCGTTCTATGGAGTACCcatgttcttaagtttttacGGTTTACCTTT
TTTCATTGAATATAAACTTCAGCATGCAACGTGTACGTTGATTGTAAACG
AGACAATTTCCCCAAAATGTGTTCCTCTTACTAATGGGGAGATCTTACGT
TCATTTTTCATTAACCTTGGTTATCTACCTGGCGCATTTATCGGTTATTT
TATGGCGGAGAAAATTGGGCGTAAAATATTACTGAACACTACAACTGGCT
TATTAGCTGTTTGTTATATCAGTCAGTTAATATGCTTACCTAACGCTATC
AATTACTTCTTGTTGTTTCTATCATCTGGTATGTCACTTTCAGCTACTTG
TTTTATAGTGTTGTACGCGGCGGAATTATTCCCAACGAATGTTCGAATGA
CTTCTACAGGTATAGCTGCCTCAGTATGGAAAATCTGCAGCATCTTGTCA
CCTGTATTGTTTCAACATTTGATTTACACAAATACGacttttgttattgt
tttaatgaGTGCTTGGAGCATTGTTGGAGCCCTTGGACTTTGTCCTTTAC
CAGAAACTCTTGGACATGGCTTGAAGGAATTTTGACATTAATATTACAGC
TATTGACATTACAATCAAGTCAGTTATGTTTTAAATTCGTTAACTGGAAa
tgttattatttattttttatatttatttagaattttcctCTAGTTAGTTC
TAcaataaattgaataaaatttttACGTCCCGAACAATGTTT

Coding sequence (CDS) from alignment at sc0000010:889290..891381

>TCONS_00001543 ID=TCONS_00001543|Name=TCONS_00001543|organism=Clytia hemisphaerica|type=CDS|length=1692bp|location=Sequence derived from alignment at sc0000010:889290..891381 (Clytia hemisphaerica)
ATGAGAAGTTTCATAGAGGACTTGCAATCGAACAATTGGTTTTCAATAAA
GATTATATTCTTGGCTACCTTAACAGCTATCTCCTCTGGAACTGTTCTAT
TTATAAACGCATTGGTTGCTCCGGACTTGCAATGTGAATGGGGTTTAACG
ACATTTGAAGTGACATCTATTTCAATTGCTTTTTATGCTGGCGAAGCCTT
TGGTTCGTGGTATTGGGGCCGAATTGCTGACATTTATGGACGTAAAAACA
CGTTAATTGCGTCCACAGGCTCGATGTTATATTTTGTCCTTATATCAGCA
GCTAGTCAATCTTTTCATATTTATCTTTTATTGCGATTCTTTGTTGGTGC
TGGATTCGCTGGGTCCTTCCTCTTAACCGTGATATATAACACGGAGTTCA
CGAAAAGCACGGATCACGGTAAAGCTGTGTTTTGGTACAATTTCGTCTAC
ACCTTTGGTAGTTTATTTTCGATTGGTTTCTCTTATTGGACTTTGAACAA
TTATGGATGGAGAATCTACACTCTAGCAGTGATATCACCAACCATAATTT
TACTTTATTTCATGATTGCTTATCTTCCTGAGTCGATACGATTTTTACAA
GCTCAAGGGCGCACTTCAGAAGCTCTTGAAGTGATAAAAGATGCCTGTAA
AACTACCAAAACTGCTTTAACAAAAGACATGGATTTATTAAATATGAACT
CTAATGCACCTGGCAAAACACAGGATTCGGGCTATATCCAAGTCCTATCA
AAACACTGGATTAAGATTTTCGGGCTTTCGTTTTTCGGTGTACCcatgtt
tttaagtttttacgGTTTACCGTTTTTCATTGAATATAAACTTCAGCATG
CAAGNATAGCAGTGATATCACCAGCTATAATATTACTTTATTTCATGATT
GCTTATCTTCCTGAATCGATACGATTTTTACAATCTCAAGGACGTACTTC
AGAAGCTCTTGAAGTGATAAAAGATGCCTGTAAAACTACCAAAACTGCTT
TGACAAAAGAAATGGATCTATTAAATATGAACTCTGATGCACCTAGCAAA
ACAGAGGATTCGGGCTATTTCCAAGTCCTATCAAAACACTGGATCAATAT
TTTTGGGCTTTCGTTCTATGGAGTACCcatgttcttaagtttttacGGTT
TACCTTTTTTCATTGAATATAAACTTCAGCATGCAACGTGTACGTTGATT
GTAAACGAGACAATTTCCCCAAAATGTGTTCCTCTTACTAATGGGGAGAT
CTTACGTTCATTTTTCATTAACCTTGGTTATCTACCTGGCGCATTTATCG
GTTATTTTATGGCGGAGAAAATTGGGCGTAAAATATTACTGAACACTACA
ACTGGCTTATTAGCTGTTTGTTATATCAGTCAGTTAATATGCTTACCTAA
CGCTATCAATTACTTCTTGTTGTTTCTATCATCTGGTATGTCACTTTCAG
CTACTTGTTTTATAGTGTTGTACGCGGCGGAATTATTCCCAACGAATGTT
CGAATGACTTCTACAGGTATAGCTGCCTCAGTATGGAAAATCTGCAGCAT
CTTGTCACCTGTATTGTTTCAACATTTGATTTACACAAATACGacttttg
ttattgttttaatgaGTGCTTGGAGCATTGTTGGAGCCCTTGGACTTTGT
CCTTTACCAGAAACTCTTGGACATGGCTTGAAGGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000802XLOC_000802Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001543-proteinTCONS_00001543-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001543-exon-sc0000010-1491911889:889290..891381TCONS_00001543-exon-sc0000010-1491911889:889290..891381Clytia hemisphaericaexon
TCONS_00001543-exon-sc0000010-1510915933:889290..891381TCONS_00001543-exon-sc0000010-1510915933:889290..891381Clytia hemisphaericaexon
TCONS_00001543-exon-sc0000010-1575043694:889290..891381TCONS_00001543-exon-sc0000010-1575043694:889290..891381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000010supercontigsc0000010:889290..891381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.96835	7.66155	37.3751	48.4204	11.0018	6.74619	10.6824	9.07098	1.96875	3.2646	2.5006	1.54341	1.21547	1.06708	1.33732	1.43515	1.52754	1.81213	2.02288	1.08983	2.47746	2.3191	11.5143	9.85932	1.67899	1.35403	2.8935	2.0403	6.00178	6.88188
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
Blast
[Close]
BLAST of TCONS_00001543 vs. Swiss-Prot (Human)
Match: S22AD (Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.943e-17
Identity = 67/219 (30.59%), Postives = 106/219 (48.40%), Query Frame = -1 
Query: 1094 PDLQCEWGLTT----FEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISAAS---QSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVYTFGSLFSIGFSYWTLNNYGWRIYTLAVISPTIILLYFMIAYLPESIRFLQAQGRTSEALEVIKDACKTTKTALTKDMDLLNMNSNAPGKTQDSGYIQVLSKH 1729
            P L+ E+ L       + T+ S+ F AG   G+  +G + D  GRK T++A    +L F LI  A+    SF +Y+ LRF V    AG     V   TE+   +   +AV      ++ G +   G +Y   N   WR+  +   +P ++L ++  A LPES R+L  +GR  EA+++I+ A    +  L+ ++    MN   P KT  SG    L +H
Sbjct:  121 PSLKNEFNLVCDRKHLKDTTQSV-FMAGLLVGTLMFGPLCDRIGRKATILAQ---LLLFTLIGLATAFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQMVLAGLAYGFRN---WRLLQITGTAPGLLLFFYFWA-LPESARWLLTRGRMDEAIQLIQKAASVNRRKLSPEL----MNQLVPEKTGPSGNALDLFRH 327
The following BLAST results are available for this feature:
BLAST of TCONS_00001543 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AD4.943e-1730.59Solute carrier family 22 member 13 OS=Homo sapiens... [more]
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