TCONS_00001543-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001543-protein
Unique Name	TCONS_00001543-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	563

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001543-protein ID=TCONS_00001543-protein|Name=TCONS_00001543-protein|organism=Clytia hemisphaerica|type=polypeptide|length=563bp
MRSFIEDLQSNNWFSIKIIFLATLTAISSGTVLFINALVAPDLQCEWGLT
TFEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISA
ASQSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVY
TFGSLFSIGFSYWTLNNYGWRIYTLAVISPTIILLYFMIAYLPESIRFLQ
AQGRTSEALEVIKDACKTTKTALTKDMDLLNMNSNAPGKTQDSGYIQVLS
KHWIKIFGLSFFGVPMFLSFYGLPFFIEYKLQHAXIAVISPAIILLYFMI
AYLPESIRFLQSQGRTSEALEVIKDACKTTKTALTKEMDLLNMNSDAPSK
TEDSGYFQVLSKHWINIFGLSFYGVPMFLSFYGLPFFIEYKLQHATCTLI
VNETISPKCVPLTNGEILRSFFINLGYLPGAFIGYFMAEKIGRKILLNTT
TGLLAVCYISQLICLPNAINYFLLFLSSGMSLSATCFIVLYAAELFPTNV
RMTSTGIAASVWKICSILSPVLFQHLIYTNTTFVIVLMSAWSIVGALGLC
PLPETLGHGLKEF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000802	XLOC_000802	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001543	TCONS_00001543	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005828	MFS_sugar_transport-like
IPR020846	MFS_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0022857	transmembrane transporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 342..563 e-value: 2.5E-16 score: 59.0
None	No IPR available	GENE3D	1.20.1250.20		coord: 10..209 e-value: 5.1E-25 score: 87.4
IPR005828	Major facilitator, sugar transporter-like	PFAM	PF00083	Sugar_tr	coord: 289..562 e-value: 4.1E-7 score: 29.1 coord: 51..227 e-value: 5.5E-23 score: 81.4
IPR020846	Major facilitator superfamily domain	PROSITE	PS50850	MFS	coord: 18..557 score: 22.798
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 19..193 e-value: 1.29571E-16 score: 78.8949
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 11..279
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 285..560

Blast

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BLAST of TCONS_00001543-protein vs. Swiss-Prot (Human)
Match: SV2B (Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.520e-21
Identity = 125/602 (20.76%), Postives = 232/602 (38.54%), Query Frame = 0

Query:    5 IEDLQSNNWFSIKIIFLATLTAISSGTVLFINALVAPDLQCEWGLTTFEVTSISIAFYAGEAFGSWYWGRIADIYGRKNTLIASTGSMLYFVLISAASQSFHIYLLLRFFVGAGFAGSFLLTVIYNTEFTKSTDHGKAVFWYNFVYTFGSLFSIGFSYWTLNNYG-------------WRIYTLAVISPTIILLYFMIAYLPESIRFLQAQGRTSEALEVIKDACKTTKTALTKDMDLLNM-NSNAPGKTQDSGYIQVLSKHWIKIFGLSFFGVPMFLSFYGLPFFI---EYKLQHAXIAVISPAIILLYF-MIAYLPESIRFLQSQGRTSEALEVIKDACKTTKTALTKEMDLLNMNSDAPSKTEDSGYFQVLSKHWINIFGLSFYGVPMFLSFYGLPFFIE--------------YKLQHATCTLIVNETISPKCVPLTNGEILRSFFI-------NLGYLPGAFIGYFMAEKIGRKILLNTTTGLLAVCYISQLICLPNAINYFLLFLSS------------GMSLSATCFIVLYAAELFPTNVRMTSTGIAASVWKICSILSPVLFQHLIYTNTTFVIVLMSAWSIVGALGLCPLPET 555
            I D   +  F   + F+  L  ++ G  +F+ +   P  + +  L++ +   + +  Y G   G++  G +AD  GRK  L  S      F  +S+  Q +  +L  R   G G  G+  +   Y +EF      G+ + W    +  G L++   ++  + +YG             WR++ +    P  + +   + ++PES RFL   G+  EA  ++K    T   A      +  + N   P +  +   IQ  +  W + + + F    +F   +    +     Y++    +AV+  A+   Y+ +  + P+ IR+ Q +   S+      +         T E  +         K  +  + ++  KH   +F  +F+    F        + +              Y+ +   C  I +  +  K     + E    F I       +L  LPG  I   + ++IGR  ++  +  + AVC      C      +FL F +S            G S++A   + +   EL+PTN R T+ GI   + K  +IL   +F   +       I+L +A  + G L    LPET
Sbjct:   98 IMDECGHGRFQWILFFVLGLALMADGVEVFVVSFALPSAEKDMCLSSSKKGMLGMIVYLGMMAGAFILGGLADKLGRKRVLSMSLAVNASFASLSSFVQGYGAFLFCRLISGIGIGGALPIVFAYFSEFLSREKRGEHLSWLGIFWMTGGLYASAMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVSM-VALKFMPESPRFLLEMGKHDEAWMILKQVHDTNMRAKGTPEKVFTVSNIKTPKQMDEFIEIQSSTGTWYQRWLVRF--KTIFKQVWDNALYCVMGPYRMNTLILAVVWFAMAFSYYGLTVWFPDMIRYFQDEEYKSKMKVFFGEHVYGATINFTMENQI-----HQHGKLVNDKFTRMYFKH--VLFEDTFFDECYFEDVTSTDTYFKNCTIESTIFYNTDLYEHKFINCRFINSTFLEQKEGCHMDLEQDNDFLIYLVSFLGSLSVLPGNIISALLMDRIGRLKMIGGSMLISAVC------C------FFLFFGNSESAMIGWQCLFCGTSIAAWNALDVITVELYPTNQRATAFGILNGLCKFGAILGNTIFASFVGITKVVPILLAAASLVGGGLIALRLPET 677

The following BLAST results are available for this feature:

BLAST of TCONS_00001543-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001543-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SV2B	7.520e-21	20.76	Synaptic vesicle glycoprotein 2B OS=Homo sapiens G...	[more]

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TCONS_00001543-protein (polypeptide) - C. hemisphaerica