TCONS_00001402-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001402-protein
Unique Name	TCONS_00001402-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1221

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001402-protein ID=TCONS_00001402-protein|Name=TCONS_00001402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1221bp
MAMRFTILYNVLFILLHLAGATDGSWTQWGSWSACTPQCYQTRKRTCTAR
ICKNYDTDTQFCNAAGRSCSKWKADGSAPFTLSKCKHEEGRCLTGLRRRI
QNKGVIYINDLTDSGVMESFSDCFELCQRIPGMTGCMYGKFKCWAHTQPL
LPRYEESFKDPSHICWVKDICRKPLDGDWSQWGPWDVCRRPCFHGDQFRR
RTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDES
GRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRV
AGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNN
PIPNAGGLDCPKSDNDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCK
TRICPTHGKWSAWGSWGKCSASCGGGKKTRTRTCTNPAPRHGGMDCGDSI
PHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNG
GRDCTDIKNDIENQKCNTNTCPNNNEVAEKVCKMQCVHLKGKCGQMLKCG
EAQLDVSNLCPKTCAATSHTTKDNNEVAENFCKKRCFHLIENCGQMVRCG
DTKLDVSNLCPKTCATTTHGTKDNNELAEKICKKRCDQLERNCGEIKRCA
GYTMLDVSNVCPETCAHKDNDKVAEKVCKKRCVHFKGNCGQMVKCGNTKF
DVSNHCPKTCAATLCEPKKEAMVMCHGRSYTLHGKAKNGASAKQYEWYKK
SKKDSLLRLDSDSQYSITYSDRDPTKSSLTILSFSMVKHEGLYAFREANL
KYIDCYDYKVKGVLQVEYIDGKDMFDVVAGENITLAVKAKDPASKTSWSV
DGQSLIEPLIKASPHYNLPSTDDFGPTTQMLEILNPQRRHGGMYKLKWST
DFDQCPIADILFNVTVRERNITASTMDNTNNGVNTTTSPNQELNAGQRIG
TEEESDDSVGYIPLIFGSFLLGIAKGSIVLWFLYKRGLARKNQRSSSNSL
LLKANDDKPDSGRIDQNSLDGDTIPEPQYNAQPVEQNSFDGDTSPVWQNN
AQPVEQNSFDCDTIPEPQYNAQPVEQNSFDGDSSPVWQNNAQPVEQNSFD
GDTSPVWQNNAYPEAQNSLDGENSFAPQSQNNNQPEAQNSLDAENHPFGP
VIQFKKQPITTESMLDENTDETNDPFGPVLQNTKQPITTRNSLDQDNEKT
LETISIFNKLASTSSRKFKRM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000742	XLOC_000742	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001402	TCONS_00001402	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt
IPR013783	Ig-like_fold
IPR003582	ShKT_dom
IPR007110	Ig-like_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 468..522 e-value: 2.4E-17 score: 73.6 coord: 179..231 e-value: 6.1E-8 score: 42.4 coord: 410..462 e-value: 1.3E-14 score: 64.5 coord: 26..70 e-value: 0.0029 score: 26.8 coord: 323..380 e-value: 2.4E-14 score: 63.7
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 406..461 e-value: 2.7E-15 score: 55.9 coord: 464..521 e-value: 2.1E-16 score: 59.5 coord: 22..93 e-value: 8.0E-4 score: 19.2 coord: 175..230 e-value: 8.0E-12 score: 44.8 coord: 319..376 e-value: 2.9E-13 score: 49.4
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 180..230 e-value: 9.9E-6 score: 25.6 coord: 469..521 e-value: 9.8E-10 score: 38.4 coord: 411..461 e-value: 5.3E-8 score: 32.9 coord: 324..374 e-value: 3.7E-9 score: 36.6
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 407..462 score: 13.252
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 320..405 score: 12.629
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 23..70 score: 9.332
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 176..231 score: 11.452
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 465..522 score: 13.518
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 23..63
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 176..226
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 461..521
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 403..461
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 317..374
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 715..802 e-value: 0.016 score: 14.9
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10		coord: 819..926 e-value: 3.8E-4 score: 19.9
IPR003582	ShKT domain	PROSITE	PS51670	SHKT	coord: 682..715 score: 7.892
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..35 score: 5.0
IPR007110	Immunoglobulin-like domain	SUPERFAMILY	48726	Immunoglobulin	coord: 826..907

Blast

[Close]

BLAST of TCONS_00001402-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 8.438e-52
Identity = 133/378 (35.19%), Postives = 161/378 (42.59%), Query Frame = 0

Query:  175 LDGDWSQWGPWDVCRRPCFHGDQFRRRTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDESGRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRVAGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQT---RNC-------------------------KTR--XNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAWGSWGKCSASCGGGKKTRTRTCTNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 522
            + G +SQW  W  C   C  G Q R R C  P P  GG+ C  S    R C    C  +D   S      EC    GRG         N  + + C    +                    H  R   GN  +   C + + C ++G WS W  WG CS SCG  G QTR R CNNP P  GG  C  ++   Q    RNC                         +TR   +P+P  GG  C  SD   Q+  C +  CPTHG WS W  WG CS +C GG+  R RTC NP P +GG  CG     I  CN   CP   G W  W SW +CSASCG G+KTR R C +P P  GGR C    +  +  +CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-VDGSWSEWSLWEECTRSCGRG---------NQTRTRTCNNPSVQ-------------------HGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD--VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP-VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG--DTTQVTRCNVQACP 4869

HSP 2 Score: 161.77 bits (408), Expect = 1.005e-39
Identity = 83/206 (40.29%), Postives = 105/206 (50.97%), Query Frame = 0

Query:  317 CKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAWGSWGKCSASCGGGKKTRTRTCTNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 522
             +++G +S+W AW  CSV+CG  G Q R R CN P+P  GG  C  SD                              + RNC+ + CP  G WS W  W +C+ SCG G +TRTRTC NP+ +HGG  C  +   I+ CN++ C P HG WS W  WG CS SCG G +TR R C NP P  GG  C   +  +  Q CN   CP
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSD-----------------------------LEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPC-PVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQM--QVCNERNCP 4698

HSP 3 Score: 112.849 bits (281), Expect = 8.959e-25
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 0

Query:  403 ICPTHGKWSAWGSWGKCSASCGGGKKTRTRTCTNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 522
            I   HG +S W +W  CS +CG G + R+R C  P P +GG  C  S   + NC  K C P  G WSEW  W +C+ SCG G +TRTRTC NP+ Q+GGR C    N +E   CN   CP
Sbjct: 4525 IVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPC-PVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEG--NAVEIIMCNIRPCP 4641

The following BLAST results are available for this feature:

BLAST of TCONS_00001402-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001402-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
HMCN1	8.438e-52	35.19	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00001402-protein (polypeptide) - C. hemisphaerica

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