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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001402 ID=TCONS_00001402|Name=TCONS_00001402|organism=Clytia hemisphaerica|type=transcript|length=3906bpRun BLAST on NCBI protein sequence of TCONS_00001402-protein >TCONS_00001402-protein ID=TCONS_00001402-protein|Name=TCONS_00001402-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1221bp MAMRFTILYNVLFILLHLAGATDGSWTQWGSWSACTPQCYQTRKRTCTARRun BLAST on NCBI transcript from alignment at sc0000010:1069472..1103646+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001402 ID=TCONS_00001402|Name=TCONS_00001402|organism=Clytia hemisphaerica|type=transcript|length=34175bp|location=Sequence derived from alignment at sc0000010:1069472..1103646+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000010:1069472..1103646+ >TCONS_00001402 ID=TCONS_00001402|Name=TCONS_00001402|organism=Clytia hemisphaerica|type=CDS|length=65988bp|location=Sequence derived from alignment at sc0000010:1069472..1103646+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001402 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 145.591 bits (366), Expect = 1.201e-34 Identity = 133/378 (35.19%), Postives = 161/378 (42.59%), Query Frame = 2
Query: 674 LDGDWSQWGPWDVCRRPCFHGDQFRRRTCTNPAPQKGGRGCPESSGHHRMCNPNSCKDLDLHSSCKREQGECLDESGRGRIQTMGKKLNHGKEKDCLEKCMDQLYYGSGCTFIKSTGYCYTHTKRVAGGNGDDGAFCWVFKKCKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSDNDSQT---RNC-------------------------KTR--XNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCP 1717
+ G +SQW W C C G Q R R C P P GG+ C S R C C +D S EC GRG N + + C + H R GN + C + + C ++G WS W WG CS SCG G QTR R CNNP P GG C ++ Q RNC +TR +P+P GG C SD Q+ C + CPTHG WS W WG CS +C GG+ R RTC NP P +GG CG I CN CP G W W SW +CSASCG G+KTR R C +P P GGR C + + +CN CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCP-VDGSWSEWSLWEECTRSCGRG---------NQTRTRTCNNPSVQ-------------------HGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSD--VQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCP-VDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPG--DTTQVTRCNVQACP 4869 HSP 2 Score: 122.094 bits (305), Expect = 1.690e-27 Identity = 94/241 (39.00%), Postives = 120/241 (49.79%), Query Frame = 2
Query: 1100 CKINGKWSKWGAWGECSVSCGPGGKQTRRRTCNNPIPNAGGLDCPKSD---------------------------------NDSQTRNCKTRXNPIPNAGGLDCPKSDNDSQTRNCKTRICPTHGKWSAXXXXXXXXXXXXXXXXXXXXXXXNPAPRHGGMDCGDSIPHILNCNLKSCPPTHGKWSEWGSWGKCSASCGAGQKTRTRTCTNPAPQNGGRDCTDIKNDIENQKCNTNTCPNN 1723
+++G +S+W AW CSV+CG G Q R R CN P+P GG C SD N ++TR C NP GG C N + C R CP HG WSAW WG CS SCG G +TR R C NP P GG C + + CN ++C P HGKW+ W SW CS SCG G + RTR C++P PQ GGR C +D+++ CN++ CP +
Sbjct: 4526 VQVHGGFSQWSAWRACSVTCG-KGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCN---NPSVQHGGRPC--EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNC-PIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEG--SDVQSDFCNSDPCPTH 4757 The following BLAST results are available for this feature:
BLAST of TCONS_00001402 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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