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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00001182-protein ID=TCONS_00001182-protein|Name=TCONS_00001182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MPLEQDVLTIGHQLEKLVSEGKSDNETISDLLKRLKELPITLDILQKTRI
GMTVNVVRKASNKDDIQTVAKGLIKSWKKLLDTQDKDKEKEKEKPKVNKQ
TSQEKESKPAPRDSRADSGGSYEVPPPKGNDPIRIQCREMLVKSLKLEGR
PEFNPAYIAADIEEATYQMFKDTGSKYKNRIKSRVMNLRDKRNPALKQMV
AEGEISPERFANMTAEEMATDELRAEREKMTKQAINEHQLATSAGTSTGQ
FKCHRCGKRKTSYSQVQTRSADEPMTTFVYCNECGNRWKFC Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0006351 |
transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003618 | Transcription elongation factor S-II, central domain | SMART | SM00510 | mid_6 | coord: 131..229
e-value: 7.0E-32
score: 121.9 |
| IPR003618 | Transcription elongation factor S-II, central domain | PFAM | PF07500 | TFIIS_M | coord: 131..238
e-value: 8.4E-33
score: 113.1 |
| IPR003618 | Transcription elongation factor S-II, central domain | GENE3D | 1.10.472.30 | | coord: 94..220
e-value: 3.0E-27
score: 94.6 |
| IPR003618 | Transcription elongation factor S-II, central domain | PROSITE | PS51321 | TFIIS_CENTRAL | coord: 133..246
score: 35.766 |
| IPR003618 | Transcription elongation factor S-II, central domain | SUPERFAMILY | 46942 | Elongation factor TFIIS domain 2 | coord: 120..222 |
| IPR003617 | Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type | SMART | SM00509 | TFS2_5 | coord: 7..83
e-value: 5.8E-18
score: 75.7 |
| IPR001222 | Zinc finger, TFIIS-type | SMART | SM00440 | Cys4_2 | coord: 251..290
e-value: 2.5E-18
score: 76.9 |
| IPR001222 | Zinc finger, TFIIS-type | PFAM | PF01096 | TFIIS_C | coord: 251..289
e-value: 2.3E-18
score: 65.6 |
| IPR001222 | Zinc finger, TFIIS-type | PROSITE | PS00466 | ZF_TFIIS_1 | coord: 253..288 |
| IPR001222 | Zinc finger, TFIIS-type | PROSITE | PS51133 | ZF_TFIIS_2 | coord: 249..289
score: 13.803 |
| IPR035100 | Transcription elongation factor, IIS-type | PIRSF | PIRSF006704 | TFIIS | coord: 1..291
e-value: 1.8E-91
score: 304.9 |
| None | No IPR available | GENE3D | 1.20.930.10 | | coord: 1..93
e-value: 1.4E-22
score: 79.0 |
| None | No IPR available | GENE3D | 2.20.25.10 | | coord: 221..291
e-value: 1.7E-29
score: 101.1 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 85..134 |
| None | No IPR available | CDD | cd00183 | TFIIS_I | coord: 4..82
e-value: 1.40473E-17
score: 73.8818 |
| None | No IPR available | CDD | cd13749 | Zn-ribbon_TFIIS | coord: 245..290
e-value: 3.51417E-27
score: 99.9877 |
| None | No IPR available | SUPERFAMILY | 57783 | Zinc beta-ribbon | coord: 239..289 |
| IPR006289 | Transcription elongation factor, TFIIS | TIGRFAM | TIGR01385 | TIGR01385 | coord: 6..291
e-value: 9.1E-90
score: 299.3 |
| IPR017923 | Transcription factor IIS, N-terminal | PFAM | PF08711 | Med26 | coord: 30..80
e-value: 1.2E-11
score: 44.3 |
| IPR017923 | Transcription factor IIS, N-terminal | PROSITE | PS51319 | TFIIS_N | coord: 5..84
score: 20.859 |
| IPR017923 | Transcription factor IIS, N-terminal | SUPERFAMILY | 47676 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | coord: 4..96 |
Blast
BLAST of TCONS_00001182-protein vs. Swiss-Prot (Human)
Match: TCEA1 (Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2) HSP 1 Score: 262.692 bits (670), Expect = 2.820e-87 Identity = 139/307 (45.28%), Postives = 199/307 (64.82%), Query Frame = 0
Query: 3 LEQDVLTIGHQLEKLVSEGKSDNETISDLLKRLKELPITLDILQKTRIGMTVNVVRKASNKDDIQTVAKGLIKSWKKLLD--TQDKDKEKEKEKPKVNKQTS---QEKESKPAPRDSRADSGGSYEV------PPPKGNDPIRIQCREMLVKSLKLEGRPEFNPAYIAAD-------IEEATYQMFKDTGSKYKNRIKSRVMNLRDKRNPALKQMVAEGEISPERFANMTAEEMATDELRAEREKMTKQAINEHQLATSAGTSTGQFKCHRCGKRKTSYSQVQTRSADEPMTTFVYCNECGNRWKFC 291
+E +V+ +++K+V K + DLLK LK +P+TL++LQ TRIGM+VN +RK S +++ ++AK LIKSWKKLLD + +KD +++K++P + Q S +E+ + +R D + + P +D +R++CREML +L R + I AD IEEA YQ ++T KYKNR++SR+ NL+D +NP L++ V G I P+ FA MTAEEMA+DEL+ R+ +TK+AI EHQ+A + GT T F C +C K+ +Y+QVQTRSADEPMTTFV CNECGNRWKFC
Sbjct: 1 MEDEVVRFAKKMDKMVQ--KKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAAL----RTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
The following BLAST results are available for this feature:
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