TCONS_00001073-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001073-protein
Unique NameTCONS_00001073-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001073-protein ID=TCONS_00001073-protein|Name=TCONS_00001073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MKQVKLHTGSVIDVCDDELNLTDYIHTKLNSAGREDKDDPFFVCDLGDIV
KKWRRFQRVLPMVKPYFAMKCNPDLEIIKLMIKLGSNFDCASKMEIKTLL
DLGVAADRIIFANPCKQTSFIKYSAANNVKLMTFDNEMELRKVKQFYPDA
ELVLRIRVDDSKSLCKFGVKFGAEPCNTMHLLQTAKQLHLNVVGVSFHVG
SGCYDASLFYDAVKLSRKVFDEGREVGYQFSMLDVGGGFPGDDLAKVSFE
ETAEKLKDGFNAFFPPEMNVKFIAEPGRYFVASACTNVCNITSVRKLESG
NESNFMYYINDGVYGSFNCVMFDHYNPTANALHVTDGPVFKCSVWGPTCD
SLDCISKSTLLPRMNIGDWMYFQNMGAYTIAAASKFNGFKQPKVIYMCRR
KFADTVTAESVNIDTKMELISKKVLHHHPQSVVKSAAVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000606XLOC_000606Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001073TCONS_00001073Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002433Orn_de-COase
IPR000183Orn/DAP/Arg_de-COase
IPR029066PLP-binding_barrel
IPR009006Ala_racemase/Decarboxylase_C
IPR022644De-COase2_N
IPR022643De-COase2_C
IPR022653De-COase2_pyr-phos_BS
Vocabulary: Biological Process
TermDefinition
GO:0006596polyamine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006596 polyamine biosynthetic process
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002433Ornithine decarboxylasePRINTSPR01182ORNDCRBXLASEcoord: 139..161
score: 44.49
coord: 363..376
score: 49.52
coord: 109..133
score: 53.47
coord: 343..353
score: 73.94
coord: 311..324
score: 70.71
coord: 39..63
score: 42.13
coord: 65..92
score: 47.14
IPR000183Ornithine/DAP/Arg decarboxylasePRINTSPR01179ODADCRBXLASEcoord: 189..202
score: 54.46
coord: 272..291
score: 42.19
coord: 67..85
score: 34.46
coord: 87..99
score: 43.27
coord: 376..389
score: 56.58
IPR029066PLP-binding barrelGENE3D3.20.20.10coord: 49..266
e-value: 1.1E-50
score: 171.7
IPR029066PLP-binding barrelSUPERFAMILY51419PLP-binding barrelcoord: 38..284
IPR009006Alanine racemase/group IV decarboxylase, C-terminalGENE3D2.40.37.10coord: 267..427
e-value: 2.6E-49
score: 166.2
IPR009006Alanine racemase/group IV decarboxylase, C-terminalSUPERFAMILY50621Alanine racemase C-terminal domain-likecoord: 265..410
IPR022644Orn/DAP/Arg decarboxylase 2, N-terminalPFAMPF02784Orn_Arg_deC_Ncoord: 46..282
e-value: 1.1E-77
score: 260.7
IPR022643Orn/DAP/Arg decarboxylase 2, C-terminalPFAMPF00278Orn_DAP_Arg_deCcoord: 79..376
e-value: 4.9E-26
score: 90.7
IPR022653Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding sitePROSITEPS00878ODR_DC_2_1coord: 67..85
NoneNo IPR availableCDDcd00622PLPDE_III_ODCcoord: 38..397
e-value: 0.0
score: 548.248

Blast
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BLAST of TCONS_00001073-protein vs. Swiss-Prot (Human)
Match: DCOR (Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2)

HSP 1 Score: 395.586 bits (1015), Expect = 7.220e-135
Identity = 193/394 (48.98%), Postives = 260/394 (65.99%), Query Frame = 0 
Query:   16 DDELNLTDYIHTKLNSAGREDKDDPFFVCDLGDIVKKWRRFQRVLPMVKPYFAMKCNPDLEIIKLMIKLGSNFDCASKMEIKTLLDLGVAADRIIFANPCKQTSFIKYSAANNVKLMTFDNEMELRKVKQFYPDAELVLRIRVDDSKSLCKFGVKFGAEPCNTMHLLQTAKQLHLNVVGVSFHVGSGCYDASLFYDAVKLSRKVFDEGREVGYQFSMLDVGGGFPGDDLAKVSFEETAEKLKDGFNAFFPPEMNVKFIAEPGRYFVASACTNVCNITS---VRKLESG-------NESNFMYYINDGVYGSFNCVMFDHYN--PTANALHVTDGPVFKCSVWGPTCDSLDCISKSTLLPRMNIGDWMYFQNMGAYTIAAASKFNGFKQPKVIYM 397
            D+     D +  K+N     D  D F+V DLGDI+KK  R+ + LP V P++A+KCN    I+K +   G+ FDCASK EI+ +  LGV  +RII+ANPCKQ S IKY+A N V++MTFD+E+EL KV + +P A+LVLRI  DDSK++C+  VKFGA    +  LL+ AK+L+++VVGVSFHVGSGC D   F  A+  +R VFD G EVG+   +LD+GGGFPG +  K+ FEE    +    + +FP +  V+ IAEPGRY+VASA T   NI +   V K ++G       +E  FMYY+NDGVYGSFNC+++DH +  P        D   +  S+WGPTCD LD I +   LP M++GDWM F+NMGAYT+AAAS FNGF++P + Y+
Sbjct:   15 DEGFTAKDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRIATDDSKAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAISDARCVFDMGAEVGFSMYLLDIGGGFPGSEDVKLKFEEITGVINPALDKYFPSDSGVRIIAEPGRYYVASAFTLAVNIIAKKIVLKEQTGSDDEDESSEQTFMYYVNDGVYGSFNCILYDHAHVKPLLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTIYYV 408
The following BLAST results are available for this feature:
BLAST of TCONS_00001073-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCOR7.220e-13548.98Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE... [more]
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