TCONS_00001060-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00001060-protein
Unique Name	TCONS_00001060-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	877

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00001060-protein ID=TCONS_00001060-protein|Name=TCONS_00001060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=877bp
MADTAEDFKMTDDEARRIKQALKDKEFMDLLVEYAKEISDPENKKKYEEE
IVAMERQRGQDVRLLKPQSGFVIKTVRLSDNMKVFLNICSSPEVKEYELQ
HVKGGANLSLPHSVSPVREDIDKGGKACIVYDVCFNPKSYDKGMKESNFR
QSMVDSAFDTIERQMNIKLDRKNKKFPKLKYKGQARPLIIRPEQQSQQKT
SPKDDKNSKTEKDSPLDFRYPDIQKENKATEEKTGKDKESEKCTKRTVID
EGKPVVPKYKIVHRGFFEMTDYTGGSLSSTTPKELVVEIELPLAKSANGL
DLDIFAQQLILDSEKPSYHLDISLPHKVDEDRGKAQFDKSKKVLIVTLPI
LKAEPVTMVPNPPSRLVEECVDEKDVIHNGGHSPDSGIDEMCNHHQNDEE
DAEVVEDADECVFQPSDLDNAVFETKNFESMPMNAQLPQYSFDQTIESVV
VAVKVPNVKVENISLGITHQQVCLSLPQDASDINSPDWSLVIRLDDRYYL
EKDDCGFDILPDRMELNLKKKKSELWDRMFIGVSESSLKMEVFLVDATTS
GIVEQLKALNVDKLPRAEVGDVEERKVADMERRLEQLLNEEEKSKIDEET
YERCSNRDVARLKTESFSEGSDLDYRHVDLMELADDVIDENSPLISPTSN
TLNKHHEFAARTNRTLERSMSHDAYHPRLRSILKRSKSDGAANTTDTDDD
VIPHRARATTYSDGHTYLSDVENDFSRRRNKSVSFQDEPIVFEFTKMTKW
QWKRQELKKAKKKKSKAKNGTSSDQTASSADEEESSAVTSQEEEKLDKPS
EEKPPQKHGRKWKKAQKKRNRNNSESRSTEEETEQTNNGQKKDKRKKKNK
KNKNQVEDDSSNESKLTLSNPLIFQLD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000600	XLOC_000600	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00001060	TCONS_00001060	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007052	CS_dom
IPR008978	HSP20-like_chaperone
IPR012981	PIH1_dom
IPR034727	Kintoun

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0070286	axonemal dynein complex assembly

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070286	axonemal dynein complex assembly
cellular_component	GO:0005737	cytoplasm

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 570..597
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 683..707
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 759..877
None	No IPR available	CDD	cd00298	ACD_sHsps_p23-like	coord: 281..349 e-value: 7.86957E-4 score: 37.5687
IPR007052	CS domain	PFAM	PF04969	CS	coord: 438..476 e-value: 0.014 score: 16.3
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 435..530 score: 9.862
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 250..356 e-value: 1.5E-11 score: 43.8
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 435..610 e-value: 5.7E-10 score: 38.9
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 432..532
IPR012981	PIH1 domain	PFAM	PF08190	PIH1	coord: 38..350 e-value: 6.5E-75 score: 252.9
IPR034727	Kintoun	HAMAP	MF_03069	Kintoun	coord: 1..877 score: 15.329

Blast

[Close]

BLAST of TCONS_00001060-protein vs. Swiss-Prot (Human)
Match: KTU (Protein kintoun OS=Homo sapiens GN=DNAAF2 PE=1 SV=2)

HSP 1 Score: 220.705 bits (561), Expect = 2.059e-60
Identity = 121/359 (33.70%), Postives = 193/359 (53.76%), Query Frame = 0

Query:    2 ADTAEDFKMTDDEARRIKQALKDKEFMDLLVEYAKEISDPENKKKYEEEIVAMERQRGQDVRLLKPQSGFVIKTVRLSDNMKVFLNICSSPEVKEYELQHVKGG-------ANLSLPHSVSPVREDIDKGGKACIVYDVCFNPKSYDKGMKESNFRQSMVDSAFDTIERQMNIKLDRKNKKFPKLKYKGQARPLIIRPEQQSQQKTSPKDDKNSKTEKDSPLDFRYPDIQKENKATEEKTGKDKESEKCTKRTVIDEGKPVVPKYKIVHRGFFEMTDYTGG--SLSSTTPKELVVEIELPLAKSANGLDLDIFAQQLILDSEKPSYHLDISLPHKVDEDRGKAQFDKSKKVLIVTLPIL 351
            + + ED  ++ +E +R+  A +D EF  +  +YA+E++DPEN+++YE EI A+ER+RG +VR + P+ G V++T  L    + F+N+CS+  V     +   GG       ++ SLP+S++P RE   +     +VYDV F+P +     +   FRQ +  +A + +E+Q  +KLDR+N K  K KYKG     ++R          P D +      D P  ++YP        +  +                 +  P  P+Y +V R   ++ DY     S  S  P ELV+ IELPL +SA    L++  + L LDS KP Y L +SLP+ VD+ RGKAQF+K+++ L+VTLP++
Sbjct:    7 SSSLEDLDLSGEEVQRLTSAFQDPEFRRMFSQYAEELTDPENRRRYEAEITALERERGVEVRFVHPEPGHVLRT-SLDGARRCFVNVCSNALVGAPSSRPGSGGDRGAAPGSHWSLPYSLAPGREYAGRSSSRYMVYDVVFHPDALALARRHEGFRQMLDATALEAVEKQFGVKLDRRNAKTLKAKYKGTPEAAVLRTPLPGVIPARP-DGEPKGPLPDFPYPYQYPAAPGPRAPSPPEAAL--------------QPAPTEPRYSVVQRHHVDLQDYRCSRDSAPSPVPHELVITIELPLLRSAEQAALEVTRKLLCLDSRKPDYRLRLSLPYPVDDGRGKAQFNKARRQLVVTLPVV 349

The following BLAST results are available for this feature:

BLAST of TCONS_00001060-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00001060-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KTU	2.059e-60	33.70	Protein kintoun OS=Homo sapiens GN=DNAAF2 PE=1 SV=...	[more]

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TCONS_00001060-protein (polypeptide) - C. hemisphaerica