Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000723-protein ID=TCONS_00000723-protein|Name=Hand bHLH transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=265bp MMNLPQIKVEHNELSSYNFTSSSCNYESAGSAYNSSPEASITPSANFQHQ PYSTIFQFEEQSCYNGPSQISTQAADLDYSYFNGANDFINSYEQYQTATP YSQYVNPSTKSTAPYTLRSVHTRKHKRFHNNQYPYLPTYSKNTRRSETIN IAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMND KERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKG RSRWPQVLWQTTLKT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR011598 bHLH_dom
Vocabulary: Molecular Function
Term Definition
GO:0046983 protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0046983
protein dimerization activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
20 40 60 80 100 120 140 160 180 200 220 240 260 Expect = 6.4E-6 / Score = 35.7 Expect = 8.2E-9 / Score = 35.2 Expect = 2.9E-10 / Score = 39.4 Score = 11.566 Expect = 6.73438E-9 / Score = 49.9051 Score = Score = Sequence SM00353 PF00010 G3DSA:4.10.280.10 PS50888 cd00083 SSF47459 mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SMART SM00353 finulus coord: 140..191 e-value: 6.4E-6 score: 35.7
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain PFAM PF00010 HLH coord: 144..185 e-value: 8.2E-9 score: 35.2
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain GENE3D 4.10.280.10 coord: 60..188 e-value: 2.9E-10 score: 39.4
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain PROSITE PS50888 BHLH coord: 133..185 score: 11.566
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain CDD cd00083 HLH coord: 144..185 e-value: 6.73438E-9 score: 49.9051
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain SUPERFAMILY 47459 HLH, helix-loop-helix DNA-binding domain coord: 144..194
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 215..248
Blast
BLAST of Hand bHLH transcription factor vs. Swiss-Prot (Human)
Match:
HAND2 (Heart- and neural crest derivatives-expressed protein 2 OS=Homo sapiens GN=HAND2 PE=1 SV=1)
HSP 1 Score: 82.8037 bits (203), Expect = 4.644e-19
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 0
Query: 141 KNTRRSETINIAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMNDKERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKGRSRWPQVLWQTTLK 264
K RR+++IN AFA +R CIPNV DTKLSKI+TLRLA SY+ +LM +L D + + F E KK E+ K++ LN+ S + + KGR+ WPQ +W LK
Sbjct: 107 KERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMD--------LLAKDDQNGEAEAFKAEIKKTDVKEEKRKKE------LNEILKSTVSSNDKKTKGRTGWPQHVWALELK 216
The following BLAST results are available for this feature: