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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000723 ID=TCONS_00000723|Name=TCONS_00000723|organism=Clytia hemisphaerica|type=transcript|length=1065bp
TTGAACTTATCATTTGGTTAAACTCTTTGCTGGTGTAAGGAGGTGTTCCG
CTGTTGATCAGGTAACGCACCGTCATGATGAATCTACCTCAAATCAAAGT
TGAACACAACGAACTATCTTCGTATAACTTCACATCTTCCTCGTGTAACT
ACGAGAGTGCTGGGAGCGCATACAATAGTAGTCCAGAAGCATCCATCACA
CCATCAGCCAACTTTCAGCACCAACCGTATTCAACTATTTTTCAATTCGA
AGAACAATCCTGCTATAACGGACCCTCACAAATCTCAACACAAGCAGCAG
ACCTCGACTACAGTTATTTTAACGGTGCCAATGATTTCATCAACAGTTAC
GAACAGTACCAAACGGCAACTCCTTATTCGCAATACGTCAATCCTTCTAC
GAAGTCGACAGCCCCGTATACGTTAAGATCTGTACACACACGTAAACATA
AACGTTTCCATAACAACCAGTATCCTTATTTACCAACTTACTCTAAGAAT
ACACGGCGATCTGAAACCATCAATATAGCATTTGCAGCCGTTCGTGGATG
TATACCAAACGTTTCTGAAGATACTAAATTATCGAAGATTCAAACATTGC
GATTGGCGATCAGTTATATGCGTTTTTTGATGTCTTGTTTGGGTGATTAT
CGCTTCATGATGCTGATGAATGATAAGGAAAGAGAACTTTACAAAGAATT
CTTCGAAGAAGACAAAAAGGTGAAACAATCTGAAGATCATGACAAAGAAg
acaataaagatttggaatgTCTAAATGACGAGCCCTCCAGTGACAAGGTT
GATGATAAAGACAGGTTGAAGGGACGCTCGCGATGGCCACAAGTGTTATG
GCAAACAACTCTCAAAACATAGAATTTGCTTATTGGTTTTCATCATATTG
TGTTTCTCAGGCTACCAAAGTCTTGGGTTGGTCAGAGTTTCAGCATACTA
AATCCTGAGTTGATTGGCTCTCAGTGAAAACTAGTTTTTGTGATGATTGA
ACGAACttgatattttacaaattaaatGAGTCgtgattaatttttttggt
tATTGTCGCTAAATT Run BLAST on NCBI protein sequence of Hand bHLH transcription factor >TCONS_00000723-protein ID=TCONS_00000723-protein|Name=Hand bHLH transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MMNLPQIKVEHNELSSYNFTSSSCNYESAGSAYNSSPEASITPSANFQHQ
PYSTIFQFEEQSCYNGPSQISTQAADLDYSYFNGANDFINSYEQYQTATP
YSQYVNPSTKSTAPYTLRSVHTRKHKRFHNNQYPYLPTYSKNTRRSETIN
IAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMND
KERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKG
RSRWPQVLWQTTLKT Run BLAST on NCBI transcript from alignment at sc0000005:926062..927500+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000723 ID=TCONS_00000723|Name=TCONS_00000723|organism=Clytia hemisphaerica|type=transcript|length=1439bp|location=Sequence derived from alignment at sc0000005:926062..927500+ (Clytia hemisphaerica)
TTGAACTTATCATTTGGTTAAACTCTTTGCTGGTGTAAGGAGGTGTTCCG
CTGTTGATCAGGTAACGCACCGTCATGATGAATCTACCTCAAATCAAAGT
TGAACACAACGAACTATCTTCGTATAACTTCACATCTTCCTCGTGTAACT
ACGAGAGTGCTGGGAGCGCATACAATAGTAGTCCAGAAGCATCCATCACA
CCATCAGCCAACTTTCAGCACCAACCGTATTCAACTATTTTTCAATTCGA
AGAACAATCCTGCTATAACGGACCCTCACAAATCTCAACACAAGCAGCAG
ACCTCGACTACAGTTATTTTAACGGTGCCAATGATTTCATCAACAGTTAC
GAACAGTACCAAACGGCAACTCCTTATTCGCAATACGTCAATCCTTCTAC
GAAGTCGACAGCCCCGTATACGTTAAGATCTGTACACACACGTAAACATA
AACGTTTCCATAACAACCAGTATCCTTATTTACCAACTTACTCTAAGAAT
ACACGGCGATCTGAAACCATCAATATAGCATTTGCAGCCGTTCGTGGATG
TATACCAAACGTTTCTGAAGATACTAAATTATCGAAGATTCAAACATTGC
GATTGGCGATCAGTTATATGCGTTTTTTGATGTCTTGTTTGGGTGATTAT
CGCTTCATGATGCTGATGAATGATAAGGAAAGAGAACTTTACAAAGAATT
CTTCGAAGAAGACAAAAAGGTGAAACAATCTGAAGATCATGACAAAGAAg
acaataaagatttggaatgTCTAAATGACGAGCCCTCCAGTGACAAGGTA
CATGGTGTTTCTTTACTCCTAagtatgaaaataaattgaatttTCTAAGG
TAAATCAATTTCAGCCTTTATGGGAAAACTCGAGCTGGGAACTTTTTAGA
CACCCTTTCCTTTTTTGGCTGAATAGTAGGGACTAATGATTATAAATGAC
TATTGTCCGTCTTTGAGAATGACCCGTTTAAGCTAGTGTTCTGAATATCC
TTTTAATACAAACACCAGACAAAAACAGCATGAAAAATACTGGTGCGTAC
ACAGGCCATAGCAAGCAAACATTCCTTTATGCTTAAGACTGAATTGTCAC
GAGTTTGGTCTCTTTTTATTTGCTGCTCTAGCTGTTGTCACCtcttaatt
ttcaatgatttttataTCCAGGTTGATGATAAAGACAGGTTGAAGGGACG
CTCGCGATGGCCACAAGTGTTATGGCAAACAACTCTCAAAACATAGAATT
TGCTTATTGGTTTTCATCATATTGTGTTTCTCAGGCTACCAAAGTCTTGG
GTTGGTCAGAGTTTCAGCATACTAAATCCTGAGTTGATTGGCTCTCAGTG
AAAACTAGTTTTTGTGATGATTGAACGAACttgatattttacaaattaaa
tGAGTCgtgattaatttttttggttATTGTCGCTAAATT Coding sequence (CDS) from alignment at sc0000005:926062..927500+ >TCONS_00000723 ID=TCONS_00000723|Name=TCONS_00000723|organism=Clytia hemisphaerica|type=CDS|length=1596bp|location=Sequence derived from alignment at sc0000005:926062..927500+ (Clytia hemisphaerica)
ATGATGAATCTACCTCAAATCAAAGTTGAACACAACGAACTATCTTCGTA
TAACTTCACATCTTCCTCGTGTAACTACGAGAGTGCTGGGAGCGCATACA
ATAGTAGTCCAGAAGCATCCATCACACCATCAGCCAACTTTCAGCACCAA
CCGTATTCAACTATTTTTCAATTCGAAGAACAATCCTGCTATAACGGACC
CTCACAAATCTCAACACAAGCAGCAGACCTCGACTACAGTTATTTTAACG
GTGCCAATGATTTCATCAACAGTTACGAACAGTACCAAACGGCAACTCCT
TATTCGCAATACGTCAATCCTTCTACGAAGTCGACAGCCCCGTATACGTT
AAGATCTGTACACACACGTAAACATAAACGTTTCCATAACAACCAGTATC
CTTATTTACCAACTTACTCTAAGAATACACGGCGATCTGAAACCATCAAT
ATAGCATTTGCAGCCGTTCGTGGATGTATACCAAACGTTTCTGAAGATAC
TAAATTATCGAAGATTCAAACATTGCGATTGGCGATCAGTTATATGCGTT
TTTTGATGTCTTGTTTGGGTGATTATCGCTTCATGATGCTGATGAATGAT
AAGGAAAGAGAACTTTACAAAGAATTCTTCGAAGAAGACAAAAAGGTGAA
ACAATCTGAAGATCATGACAAAGAAgacaataaagatttggaatgTCTAA
ATGACGAGCCCTCCAGTGACAAGGTTGATGATAAAGACAGGTTGAAGGGA
CGCTCGCGATGGCCACAAGTGTTATGGCAAACAACTCTCAAAACATAGAT
GATGAATCTACCTCAAATCAAAGTTGAACACAACGAACTATCTTCGTATA
ACTTCACATCTTCCTCGTGTAACTACGAGAGTGCTGGGAGCGCATACAAT
AGTAGTCCAGAAGCATCCATCACACCATCAGCCAACTTTCAGCACCAACC
GTATTCAACTATTTTTCAATTCGAAGAACAATCCTGCTATAACGGACCCT
CACAAATCTCAACACAAGCAGCAGACCTCGACTACAGTTATTTTAACGGT
GCCAATGATTTCATCAACAGTTACGAACAGTACCAAACGGCAACTCCTTA
TTCGCAATACGTCAATCCTTCTACGAAGTCGACAGCCCCGTATACGTTAA
GATCTGTACACACACGTAAACATAAACGTTTCCATAACAACCAGTATCCT
TATTTACCAACTTACTCTAAGAATACACGGCGATCTGAAACCATCAATAT
AGCATTTGCAGCCGTTCGTGGATGTATACCAAACGTTTCTGAAGATACTA
AATTATCGAAGATTCAAACATTGCGATTGGCGATCAGTTATATGCGTTTT
TTGATGTCTTGTTTGGGTGATTATCGCTTCATGATGCTGATGAATGATAA
GGAAAGAGAACTTTACAAAGAATTCTTCGAAGAAGACAAAAAGGTGAAAC
AATCTGAAGATCATGACAAAGAAgacaataaagatttggaatgTCTAAAT
GACGAGCCCTCCAGTGACAAGGTTGATGATAAAGACAGGTTGAAGGGACG
CTCGCGATGGCCACAAGTGTTATGGCAAACAACTCTCAAAACATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000723-exon-sc0000005-1491911889:926062..926858 | TCONS_00000723-exon-sc0000005-1491911889:926062..926858 | Clytia hemisphaerica | exon |
| TCONS_00000723-exon-sc0000005-1510915933:926062..926858 | TCONS_00000723-exon-sc0000005-1510915933:926062..926858 | Clytia hemisphaerica | exon |
| TCONS_00000723-exon-sc0000005-1575043694:926062..926858 | TCONS_00000723-exon-sc0000005-1575043694:926062..926858 | Clytia hemisphaerica | exon |
| TCONS_00000723-exon-sc0000005-1491911889:927233..927500 | TCONS_00000723-exon-sc0000005-1491911889:927233..927500 | Clytia hemisphaerica | exon |
| TCONS_00000723-exon-sc0000005-1510915933:927233..927500 | TCONS_00000723-exon-sc0000005-1510915933:927233..927500 | Clytia hemisphaerica | exon |
| TCONS_00000723-exon-sc0000005-1575043694:927233..927500 | TCONS_00000723-exon-sc0000005-1575043694:927233..927500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000005 | supercontig | sc0000005:926062..927500 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00000723 vs. Swiss-Prot (Human)
Match: HAND2 (Heart- and neural crest derivatives-expressed protein 2 OS=Homo sapiens GN=HAND2 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.284e-18 Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 3
Query: 495 KNTRRSETINIAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMNDKERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKGRSRWPQVLWQTTLK 866
K RR+++IN AFA +R CIPNV DTKLSKI+TLRLA SY+ +LM +L D + + F E KK E+ K++ LN+ S + + KGR+ WPQ +W LK
Sbjct: 107 KERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMD--------LLAKDDQNGEAEAFKAEIKKTDVKEEKRKKE------LNEILKSTVSSNDKKTKGRTGWPQHVWALELK 216
The following BLAST results are available for this feature:
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