Hand bHLH transcription factor (polypeptide) - C. hemisphaerica

Overview
NameHand bHLH transcription factor
Unique NameTCONS_00000723-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length265

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000723-protein ID=TCONS_00000723-protein|Name=Hand bHLH transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MMNLPQIKVEHNELSSYNFTSSSCNYESAGSAYNSSPEASITPSANFQHQ
PYSTIFQFEEQSCYNGPSQISTQAADLDYSYFNGANDFINSYEQYQTATP
YSQYVNPSTKSTAPYTLRSVHTRKHKRFHNNQYPYLPTYSKNTRRSETIN
IAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMND
KERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKG
RSRWPQVLWQTTLKT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000456XLOC_000456Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000723TCONS_00000723Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 140..191
e-value: 6.4E-6
score: 35.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 144..185
e-value: 8.2E-9
score: 35.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 60..188
e-value: 2.9E-10
score: 39.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 133..185
score: 11.566
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 144..185
e-value: 6.73438E-9
score: 49.9051
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 144..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 215..248

Blast
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BLAST of Hand bHLH transcription factor vs. Swiss-Prot (Human)
Match: HAND2 (Heart- and neural crest derivatives-expressed protein 2 OS=Homo sapiens GN=HAND2 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.644e-19
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 0 
Query:  141 KNTRRSETINIAFAAVRGCIPNVSEDTKLSKIQTLRLAISYMRFLMSCLGDYRFMMLMNDKERELYKEFFEEDKKVKQSEDHDKEDNKDLECLNDEPSSDKVDDKDRLKGRSRWPQVLWQTTLK 264
            K  RR+++IN AFA +R CIPNV  DTKLSKI+TLRLA SY+ +LM         +L  D +    + F  E KK    E+  K++      LN+   S    +  + KGR+ WPQ +W   LK
Sbjct:  107 KERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMD--------LLAKDDQNGEAEAFKAEIKKTDVKEEKRKKE------LNEILKSTVSSNDKKTKGRTGWPQHVWALELK 216
The following BLAST results are available for this feature:
BLAST of Hand bHLH transcription factor vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HAND24.644e-1940.32Heart- and neural crest derivatives-expressed prot... [more]
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