TCONS_00000581-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000581-protein
Unique Name	TCONS_00000581-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1072

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000581-protein ID=TCONS_00000581-protein|Name=TCONS_00000581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1072bp
PNKDLVNFNNDEDDFKMPSTKSSSNKQCQSTPVRRSVRKSGSCSGSKKRK
QNNRRLRSESKRQCLSEKGSNTSTMEPYTNEDETRILDTPDRELAKTIDF
EQSVGETPGNSTSILNTCLSIDPIDEKDESNNSVEISFQDPNKTLSAPED
DFLCDRTIGENNETNVLDHCLPLESSGVDLFQPDKSKIDKTVIKESNETK
LFDDFNFTKNESALVNMNLTDIESSANSYPENTFYGLPMTVKDMLLQIRG
IPSLYEWQNDCLNLSSVINRKNIVYSLPTSGGKTLVAEILMMQEILVKQR
NVILVLPYVSIVQEKVRDLSPFAVQLGFHIEEYASRKGCLPPKKRRRKNS
IFIATIEKANAIINSLVENERTEELGKVVVDELHMIGEGGGRAALLEILL
TKIMFKFTHVQIIGMSATLGNMDDLKKFLNAQIFTNEFRPVELTEYVKLE
DTLYKVDSMAKTDEELCVVNRQITHPVGFKEENKRSDPDHLCSLALEVIP
QHSCMVFCATKKNCENVALLIAQGLPRDLRNHREEEKYALLQNIHNVANG
VCKTLARTIPFGIAYHHSGLTMDERKLVEEAYSSGVLCLLCCTSTLAAGV
NLPAKRVILRSPYVGNQCMSRAQYKQMIGRAGRAGIDSSGESILVIAKKD
KNKLHKLIRGAMGSCSSSLMYEKGKGLRQLILSLLGLKICDSVSELENLL
RTTLYHVQETSTNAATYDKENQKPKREDSESLFQMINKQIEALMSMSMIS
RKSSPCPSRENSQESITIEGESQTKDEQNKADVSNDTNDKKRTTDDPVDG
VNVGLTPSKLVITDIGRATVKGCIDIDFVPTLYKDLKKSLQGIVLATELH
LLYLATPIDQTAILTVKWMTYYRQFSKLNENETKAAEMIGIQEGMLMKKA
TGSSSKKFEETTYKRFYLTLMLYLLVKKKTIWYVAELFETTRGFLQNLLS
SATSFTSLLVYFTAEIPEFWTLKLLFQDLVSHLTNTGDVDLLPLMEIPGV
KQARARQLFKKGYHSLKDLASAEVGKLCQEIEFLPRKQANLIISSAKMLL
QEKVEALREEADEIAGVSGDAT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000344	XLOC_000344	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000581	TCONS_00000581	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001650	Helicase_C
IPR014001	Helicase_ATP-bd
IPR011545	DEAD/DEAH_box_helicase_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 549..635 e-value: 3.7E-17 score: 73.0
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 489..635 e-value: 1.9E-10 score: 41.0
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 490..685 score: 12.939
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 250..446 e-value: 4.2E-10 score: 49.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 264..437 score: 16.539
None	No IPR available	GENE3D	3.40.50.300		coord: 40..464 e-value: 1.2E-21 score: 76.4
None	No IPR available	GENE3D	1.10.150.20		coord: 990..1049 e-value: 4.1E-13 score: 49.0
None	No IPR available	GENE3D	3.40.50.300		coord: 471..797 e-value: 2.6E-26 score: 91.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 749..800
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..90
None	No IPR available	CDD	cd00079	HELICc	coord: 472..645 e-value: 1.32369E-13 score: 68.4184
None	No IPR available	CDD	cd00046	DEXDc	coord: 278..419 e-value: 1.65499E-11 score: 62.3548
None	No IPR available	SUPERFAMILY	158702	Sec63 N-terminal domain-like	coord: 889..1047
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 266..423 e-value: 1.4E-11 score: 44.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 559..648 coord: 470..523 coord: 268..422

Blast

[Close]

BLAST of TCONS_00000581-protein vs. Swiss-Prot (Human)
Match: HELQ (Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2)

HSP 1 Score: 560.451 bits (1443), Expect = 0.000e+0
Identity = 272/496 (54.84%), Postives = 368/496 (74.19%), Query Frame = 0

Query:  215 VNMNLTDIESSANSYPENTFYGLPMTVKDMLLQIRGIPSLYEWQNDCLNLSSVINRKNIVYSLPTSGGKTLVAEILMMQEILVKQRNVILVLPYVSIVQEKVRDLSPFAVQLGFHIEEYASRKGCLPPKKRRRKNSIFIATIEKANAIINSLVENERTEELGKVVVDELHMIGEGGGRAALLEILLTKIMFKFTHVQIIGMSATLGNMDDLKKFLNAQIFTNEFRPVELTEYVKLEDTLYKVDSMAKTDEELCVVNRQITHPVGFKEENKRSDPDHLCSLALEVIPQHSCMVFCATKKNCENVALLIAQGLPRDLRNHREEEKYALLQNIHNVANG-VCKTLARTIPFGIAYHHSGLTMDERKLVEEAYSSGVLCLLCCTSTLAAGVNLPAKRVILRSPYVGNQCMSRAQYKQMIGRAGRAGIDSSGESILVIAKKDKNKLHKLIRGAMGSCSSSLMYEKGKGLRQLILSLLGLKICDSVSELENLLRTTLYHVQE 709
            +N+    +ESS+N      FY LP  V+D+  Q +GI  LYEWQ+ CL L+SV  RKN++YSLPTSGGKTLVAEILM+QE+L  +++V+++LPYV+IVQEK+  LS F ++LGF +EEYA  KG  PP KRR K S++IATIEK ++++NSL+E  R + LG VVVDELHMIGE G R A LE+ L KI++     QIIGMSATL N++DL+KFL A+ +T++FRPVEL EY+K+ DT+Y+VDS A   E     +R + +   + +  K+ DPDHL +L  EVIP +SC+VFC +KKNCENVA +I + L ++   H+E+EK  +++N+ N+ NG +C  L RTIPFG+AYHHSGLT DERKL+EEAYS+GVLCL  CTSTLAAGVNLPA+RVILR+PYV  + + R QYKQMIGRAGRAGID+ GESIL++ +KDK ++ +LI   + +C S L+ E  KG++ L LSL+GLKI  ++ ++ + +  T + VQ+
Sbjct:  299 INVAKKTVESSSNDL--GPFYSLPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGE-GSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKA---ENGMTFSRLLNYK--YSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITKPLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQ 786

HSP 2 Score: 234.958 bits (598), Expect = 1.345e-63
Identity = 116/260 (44.62%), Postives = 167/260 (64.23%), Query Frame = 0

Query:  812 ITDIGRATVKGCIDIDFVPTLYKDLKKSLQGIVLATELHLLYLATPIDQTAILTVKWMTYYRQFSKLNENETKAAEMIGIQEGMLMKKATGSS-SKKFEETTYKRFYLTLMLYLLVKKKTIWYVAELFETTRGFLQNLLSSATSFTSLLVYFTAEIPEFWTLKLLFQDLVSHLTNTGDVDLLPLMEIPGVKQARARQLFKKGYHSLKDLASAEVGKLCQEIEFLPRKQANLIISSAKMLLQEKVEALREEADEIAGVSGD 1070
            IT +GRA+ KG ID+ +   LY+DLKK L+G+VL + LHL+YL TP D  +     WM Y+RQFS+L+  E   A ++G+ E  + KKA+G +  KK ++    R YL+ +LY L+K+  IW V+E F   RG++QNLL+   SF+S +++F  E+ EFW  + L  +L   LT     +L+PLME+ GV + RA+QL+  GY SL  LA+A    L + I+ L R+QA  I+SSAKMLL EK EAL+EE +E+  +  D
Sbjct:  830 ITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDWMIYFRQFSQLSPAEQNVAAILGVSESFIGKKASGQAIGKKVDKNVVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEKAEALQEEVEELLRLPSD 1089

The following BLAST results are available for this feature:

BLAST of TCONS_00000581-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000581-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HELQ	1.345e-63	54.84	Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV...	[more]

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TCONS_00000581-protein (polypeptide) - C. hemisphaerica