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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000581 ID=TCONS_00000581|Name=TCONS_00000581|organism=Clytia hemisphaerica|type=transcript|length=3632bpRun BLAST on NCBI protein sequence of TCONS_00000581-protein >TCONS_00000581-protein ID=TCONS_00000581-protein|Name=TCONS_00000581-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1072bp PNKDLVNFNNDEDDFKMPSTKSSSNKQCQSTPVRRSVRKSGSCSGSKKRKRun BLAST on NCBI transcript from alignment at sc0000002:1126344..1165239- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00000581 ID=TCONS_00000581|Name=TCONS_00000581|organism=Clytia hemisphaerica|type=transcript|length=38896bp|location=Sequence derived from alignment at sc0000002:1126344..1165239- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000002:1126344..1165239- >TCONS_00000581 ID=TCONS_00000581|Name=TCONS_00000581|organism=Clytia hemisphaerica|type=CDS|length=57942bp|location=Sequence derived from alignment at sc0000002:1126344..1165239- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00000581 vs. Swiss-Prot (Human)
Match: HELQ (Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2) HSP 1 Score: 525.783 bits (1353), Expect = 9.317e-166 Identity = 272/496 (54.84%), Postives = 368/496 (74.19%), Query Frame = 2
Query: 644 VNMNLTDIESSANSYPENTFYGLPMTVKDMLLQIRGIPSLYEWQNDCLNLSSVINRKNIVYSLPTSGGKTLVAEILMMQEILVKQRNVILVLPYVSIVQEKVRDLSPFAVQLGFHIEEYASRKGCLPPKKRRRKNSIFIATIEKANAIINSLVENERTEELGKVVVDELHMIGEGGGRAALLEILLTKIMFKFTHVQIIGMSATLGNMDDLKKFLNAQIFTNEFRPVELTEYVKLEDTLYKVDSMAKTDEELCVVNRQITHPVGFKEENKRSDPDHLCSLALEVIPQHSCMVFCATKKNCENVALLIAQGLPRDLRNHREEEKYALLQNIHNVANG-VCKTLARTIPFGIAYHHSGLTMDERKLVEEAYSSGVXXXXXXTSTLAAGVNLPAKRVILRSPYVGNQCMSRAQYKQMIGRAGRAGIDSSGESILVIAKKDKNKLHKLIRGAMGSCSSSLMYEKXXXXXXXXXXXXXXKICDSVSELENLLRTTLYHVQE 2128
+N+ +ESS+N FY LP V+D+ Q +GI LYEWQ+ CL L+SV RKN++YSLPTSGGKTLVAEILM+QE+L +++V+++LPYV+IVQEK+ LS F ++LGF +EEYA KG PP KRR K S++IATIEK ++++NSL+E R + LG VVVDELHMIGE G R A LE+ L KI++ QIIGMSATL N++DL+KFL A+ +T++FRPVEL EY+K+ DT+Y+VDS A E +R + + + + K+ DPDHL +L EVIP +SC+VFC +KKNCENVA +I + L ++ H+E+EK +++N+ N+ NG +C L RTIPFG+AYHHSGLT DERKL+EEAYS+GVLCL CTSTLAAGVNLPA+RVILR+PYV + + R QYKQMIGRAGRAGID+ GESIL++ +KDK ++ +LI + +C S L+ E KG++ L LSL+GLKI ++ ++ + + T + VQ+
Sbjct: 299 INVAKKTVESSSNDL--GPFYSLPSKVRDLYAQFKGIEKLYEWQHTCLTLNSVQERKNLIYSLPTSGGKTLVAEILMLQELLCCRKDVLMILPYVAIVQEKISGLSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIATIEKGHSLVNSLIETGRIDSLGLVVVDELHMIGE-GSRGATLEMTLAKILYTSKTTQIIGMSATLNNVEDLQKFLQAEYYTSQFRPVELKEYLKINDTIYEVDSKA---ENGMTFSRLLNYK--YSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKFLSKEYLKHKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAPYVAKEFLKRNQYKQMIGRAGRAGIDTIGESILILQEKDKQQVLELITKPLENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIYHFMNGTFFGVQQ 786 HSP 2 Score: 221.09 bits (562), Expect = 1.040e-58 Identity = 116/260 (44.62%), Postives = 167/260 (64.23%), Query Frame = 2
Query: 2435 ITDIGRATVKGCIDIDFVPTLYKDLKKSLQGIVLATELHLLYLATPIDQTAILTVKWMTYYRQFSKLNENETKAAEMIGIQEGMLMKKATGSS-SKKFEETTYKRFYLTLMLYLLVKKKTIWYVAELFETTRGFLQNXXXXXXXXXXXXVYFTAEIPEFWTLKLLFQDLVSHLTNTGDVDLLPLMEIPGVKQARARQLFKKGYHSLKDLASAEVGKLCQEIEFLPRKQANLIISSAKMLLQEKVEALREEADEIAGVSGD 3211
IT +GRA+ KG ID+ + LY+DLKK L+G+VL + LHL+YL TP D + WM Y+RQFS+L+ E A ++G+ E + KKA+G + KK ++ R YL+ +LY L+K+ IW V+E F RG++QNLL+ SF+S +++F E+ EFW + L +L LT +L+PLME+ GV + RA+QL+ GY SL LA+A L + I+ L R+QA I+SSAKMLL EK EAL+EE +E+ + D
Sbjct: 830 ITKLGRASFKGTIDLAYCDILYRDLKKGLEGLVLESLLHLIYLTTPYDLVSQCNPDWMIYFRQFSQLSPAEQNVAAILGVSESFIGKKASGQAIGKKVDKNVVNRLYLSFVLYTLLKETNIWTVSEKFNMPRGYIQNLLTGTASFSSCVLHFCEELEEFWVYRALLVELTKKLTYCVKAELIPLMEVTGVLEGRAKQLYSAGYKSLMHLANANPEVLVRTIDHLSRRQAKQIVSSAKMLLHEKAEALQEEVEELLRLPSD 1089 The following BLAST results are available for this feature:
BLAST of TCONS_00000581 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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