TCONS_00000564-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000564-protein
Unique NameTCONS_00000564-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000564-protein ID=TCONS_00000564-protein|Name=TCONS_00000564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MDESGSKCIKYLMFIFNFIFWLSGLALIIIGSIIKAKYGDYLSYGEDGSK
FASVSVFIIIVGVIIFVIGFLGCCGSIRENYCMVTTFAILLGIIFILEIV
AGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCG
RNNSTEYKNPGGNSTFCAANGAVASCYSDNTCDGTLYTKGCEASFVDFVK
HNLAVIGAVAIGVAFIQLLGIIFACCLMKSIKDGYEVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000335XLOC_000335Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000564TCONS_00000564Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 78..106
score: 35.66
coord: 205..231
score: 41.21
coord: 51..77
score: 37.35
coord: 11..34
score: 38.03
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 1..236
e-value: 1.3E-56
score: 189.4
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 9..229
e-value: 9.3E-53
score: 179.2
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 106..203
e-value: 1.8E-14
score: 53.3
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 106..203
IPR018503Tetraspanin, conserved sitePROSITEPS00421TM4_1coord: 62..84
NoneNo IPR availableCDDcd03127tetraspanin_LELcoord: 106..203
e-value: 3.96898E-16
score: 69.8407

Blast
[Close]
BLAST of TCONS_00000564-protein vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.449e-42
Identity = 78/243 (32.10%), Postives = 135/243 (55.56%), Query Frame = 0 
Query:    3 ESGSKCIKYLMFIFNFIFWLSGLALIIIGSIIKAKYGDYLSYGEDGSKFASVSVFIIIVGVIIFVIGFLGCCGSIRENYCMVTTFAILLGIIFILEIVAGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCGRNNSTEYKNPGGNSTFCAANGAVASCYSDNTC-------DGTLYTKGCEASFVDFVKHNLAVIGAVAIGVAFIQLLGIIFACCLMKSIKDGYEVV 238
            E G KC+K+L+++    F    + LI +G  + A+     +  +  +  + + V II VGV +F++ F+GCCG+ +ENYC++ TFAI L +I ++E+ A   G+ +R KV    + +    +  Y   +   +  +LD  Q +F CCG  N T+++     S     N    SC  + T        +  ++ +GC      +++ N+ V+ A A+G+AF+++LGI+FACCL+KSI+ GYEV+
Sbjct:    4 EGGMKCVKFLLYVLLLAFCACAVGLIAVG--VGAQLVLSQTIIQGATPGSLLPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTAS--ILDRMQADFKCCGAANYTDWEKIPSMSK----NRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM 238
The following BLAST results are available for this feature:
BLAST of TCONS_00000564-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD633.449e-4232.10CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2[more]
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