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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=transcript|length=1790bp
ATGTCAGCAATTCGAACAATGACGTCAATTGCGATATgttaaatgttttg
atttttataaagataCACAAAGGGGGAGAGCGAataaatttcattggctg
gATTTGAATTAAAAAGGGATAAATTTTCTGTGAATTACGCCCCATTGCAA
GCTGCAGCCTCGTGATCGAAGGACGAACGTGTTAGAGTTTGAAGTTTGAC
CTGTTTTCACACTAAATTATATCATCATGGATGAATCTGGAAGCAAATGC
ATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTGGCTCAGTGGTTT
GGCACTTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATT
TGTCATATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATT
ATCATTGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGG
ATCCATTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCG
GAATTATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTAC
AGGAAGAAGGTTGAAGATCACATCAGCAAATCACTCGATGATGCTGTCag
caaatatttcaatgaaGACCAACCAGGAGCCAAAGAATTACTCGACTGGG
CTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTGAATACAAA
AACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCTGTTGCATC
TTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAAAGGATGTG
AAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCATTGGAGCA
GTTGCTATTGGTGTTGCCTTTATCCAACTTCTTGGAATCATCTTTGCCTG
CTGTCTCATGAAATCTATCAAGGACGGTTATGAAGTTGTTTAAATACTTA
AAACGAGACTCAGAATGACACCCAAAGACTTGAATTCCACTCTTTCGTCA
TTTACGTGGAAATTCAACTTGCACTAAACATGGGAAAAGTATCCAGAAGA
TTGGAATACGTTGTAAATGATGCTCATAGAATTTTTTACTAAGTTATAAA
TACATTACATAACGCCCTtagtattttttcattcaattttttaatagcaa
aaattataatttaagATTCAATTCTTTAGGGTTTTATGTGGAAAGAATCT
TATTTTATTTAGGGATACAAATTATTTTGTTCGTCTTCAGATACACAGAA
AAGAAACGTTTTAAAACCCAACCCTTTTACACActtctttttttgtaaga
atttgaaaatgatgaaattagtcaaaaaattaagaacatcacCATTATGA
AATTTGGCAGCAGAACCTAAGAGTGCTATTTTTGGTTCATTTATAACTGT
AAATTTCCTATTATCCCCAATAAGGCTCGTCAAAATGCTATTATATTATG
CTTCAGGTTTGTGAATTACTTGTTAATTTTaccattctcataaaaaagcg
tGTTTGTATTTTATCTCCTGGGTAGTGAATCTgactttgttttttcaaaa
aatataatattattgACACCAACCATTCTAACTGTGCAAATATGTTAACA
AATGTTGAAtggtttattcagtttttttcgatcataaattttcctttttc
tctttctttgaaGATGATGTGATTGCGATTATATTATAACACTTCTTTTG
CTTCAAATCTTCAAATCTAAATGAAATTTCAATACGTATAAAATTTTATT
CAGGTGTAAATTAACTTCGCTTGACCTACAGTgtttttct Run BLAST on NCBI protein sequence of TCONS_00000564-protein >TCONS_00000564-protein ID=TCONS_00000564-protein|Name=TCONS_00000564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MDESGSKCIKYLMFIFNFIFWLSGLALIIIGSIIKAKYGDYLSYGEDGSK
FASVSVFIIIVGVIIFVIGFLGCCGSIRENYCMVTTFAILLGIIFILEIV
AGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCG
RNNSTEYKNPGGNSTFCAANGAVASCYSDNTCDGTLYTKGCEASFVDFVK
HNLAVIGAVAIGVAFIQLLGIIFACCLMKSIKDGYEVV Run BLAST on NCBI transcript from alignment at sc0000002:709241..711701- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at sc0000002:709241..711701- (Clytia hemisphaerica)
ATGTCAGCAATTCGAACAATGACGTCAATTGCGATATGTTAAATGTTTTG
ATTTTTATAAAGATACACAAAGGGGGAGAGCGAATAAATTTCATTGGCTG
GATTTGAATTAAAAAGGGATAAATTTTCTGTGAATTACGCCCCATTGCAA
GCTGCAGCCTCGTGATCGAAGGACGAACGTGTTAGAGTTTGAAGTTTGAC
CTGTTTTCACACTAAATTATATCATCATGGATGAATCTGGAAGCAAATGC
ATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTGGGTGAGTAAAAT
TTTTATGTGATATCTACTCCGACATTTTGGATATCATCATTGTATGTTTC
ACTTCNTTTATGTGATATCTACTCCTACATTTTGGATATCATCATTGTAT
GTTTCACTTCTTGACTCAATTAAAATGACTTTTTGTTACGCTTATCATAT
AAGCCTCTAAACTATAATGTGATAAGTTTAAAAAAGGTCTAATGCCTTTG
AATTAGACAAATAGGCTGTTGAAACTTTTTCAATTAGGATTGTGCTAACT
TGATGTACCACTGTTTTATTTTCATACAACTGTGTTTATCGTGAAAAGTA
TTATGAATATTCACTATCACATTACAGCTCAGTGGTTTGGCACTTATTAT
CATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTCATATGGTG
AAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCATTGTCGGT
GTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCCATTCGTGA
AAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAATTATCTTTA
TTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAAGAAGGTA
AGATGCATGTAATTATTTTGATAACAGAAATCACATATCATTCTAGATGT
ATAGCTATATAACATAGATATATCTACATTCATCCTTTTATAGGCATAAA
TTAAATAAAATCTTGTAATTGCCTGTAAAAATTTGTCAATAGAATTCTAA
AACTATATTCATCCTTTCAGGTTGAAGATCACATCAGCAAATCACTCGAT
GATGCTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATT
ACTCGACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTA
CTGAATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGT
GCTGTTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACAC
TAAAGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAG
TCATTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAAGTAAGTAAAATC
TTGTGGATGACATTTGCTTCCATGTGGGGATTCACTAGGAATTAGTTTTA
ATAATACCAGACACAACATGCATTCTTTACATTTTACACACTCATGTCAT
GGAAATCCTTTACAAAATCATTCATTAAAATTTCTGTTATCTTTTTAGCT
TCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACGGTT
ATGAAGTTGTTTAAATACTTAAAACGAGACTCAGAATGACACCCAAAGAC
TTGAATTCCACTCTTTCGTCATTTACGTGGAAATTCAACTTGCACTAAAC
ATGGGAAAAGTATCCAGAAGATTGGAATACGTTGTAAATGATGCTCATAG
AATTTTTTACTAAGTTATAAATACATTACATAACGCCCTTAGTATTTTTT
CATTCAATTTTTTAATAGCAAAAATTATAATTTAAGATTCAATTCTTTAG
GGTTTTATGTGGAAAGAATCTTATTTTATTTAGGGATACAAATTATTTTG
TTCGTCTTCAGATACACAGAAAAGAAACGTTTTAAAACCCAACCCTTTTA
CACACTTCTTTTTTTGTAAGAATTTGAAAATGATGAAATTAGTCAAAAAA
TTAAGAACATCACCATTATGAAATTTGGCAGCAGAACCTAAGAGTGCTAT
TTTTGGTTCATTTATAACTGTAAATTTCCTATTATCCCCAATAAGGCTCG
TCAAAATGCTATTATATTATGCTTCAGGTTTGTGAATTACTTGTTAATTT
TACCATTCTCATAAAAAAGCGTGTTTGTATTTTATCTCCTGGGTAGTGAA
TCTGACTTTGTTTTTTCAAAAAATATAATATTATTGACACCAACCATTCT
AACTGTGCAAATATGTTAACAAATGTTGAATGGTTTATTCAGTTTTTTTC
GATCATAAATTTTCCTTTTTCTCTTTCTTTGAAGATGATGTGATTGCGAT
TATATTATAACACTTCTTTTGCTTCAAATCTTCAAATCTAAATGAAATTT
CAATACGTATAAAATTTTATTCAGGTGTAAATTAACTTCGCTTGACCTAC
AGTGTTTTTCT Coding sequence (CDS) from alignment at sc0000002:709241..711701- >TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000002:709241..711701- (Clytia hemisphaerica)
CTTCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACGG
TTATGAAGTTGTTTAAGTTGAAGATCACATCAGCAAATCACTCGATGATG
CTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATTACTC
GACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTGA
ATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCTG
TTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAAA
GGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCAT
TGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAACTCAGTGGTTTGGCAC
TTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTCA
TATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCAT
TGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCCA
TTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAATT
ATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAA
GAAGATGGATGAATCTGGAAGCAAATGCATCAAGTATTTGATGTTCATTT
TCAACTTTATCTTCTGGCTTCTTGGAATCATCTTTGCCTGCTGTCTCATG
AAATCTATCAAGGACGGTTATGAAGTTGTTTAAGTTGAAGATCACATCAG
CAAATCACTCGATGATGCTGTCAGCAAATATTTCAATGAAGACCAACCAG
GAGCCAAAGAATTACTCGACTGGGCTCAACAAGAATTTGACTGCTGTGGA
CGCAACAATAGTACTGAATACAAAAACCCAGGAGGAAACTCAACATTCTG
TGCTGCTAATGGTGCTGTTGCATCTTGCTACTCTGACAATACGTGTGACG
GAACCCTCTACACTAAAGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAA
CACAACTTAGCAGTCATTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCA
ACTCAGTGGTTTGGCACTTATTATCATTGGATCAATCATCAAAGCTAAAT
ATGGAGACTATTTGTCATATGGTGAAGATGGCTCCAAATTCGCTTCAGTC
TCTGTTTTCATTATCATTGTCGGTGTAATCATCTTTGTTATTGGATTCTT
GGGATGTTGTGGATCCATTCGTGAAAACTACTGCATGGTCACTACCTTTG
CTATTCTTCTCGGAATTATCTTTATTTTGGAAATTGTTGCTGGAGCCCTT
GGATTTGCCTACAGGAAGAAGATGGATGAATCTGGAAGCAAATGCATCAA
GTATTTGATGTTCATTTTCAACTTTATCTTCTGGCTTCTTGGAATCATCT
TTGCCTGCTGTCTCATGAAATCTATCAAGGACGGTTATGAAGTTGTTTAA
GTTGAAGATCACATCAGCAAATCACTCGATGATGCTGTCAGCAAATATTT
CAATGAAGACCAACCAGGAGCCAAAGAATTACTCGACTGGGCTCAACAAG
AATTTGACTGCTGTGGACGCAACAATAGTACTGAATACAAAAACCCAGGA
GGAAACTCAACATTCTGTGCTGCTAATGGTGCTGTTGCATCTTGCTACTC
TGACAATACGTGTGACGGAACCCTCTACACTAAAGGATGTGAAGCCTCTT
TCGTTGATTTTGTCAAACACAACTTAGCAGTCATTGGAGCAGTTGCTATT
GGTGTTGCCTTTATCCAACTCAGTGGTTTGGCACTTATTATCATTGGATC
AATCATCAAAGCTAAATATGGAGACTATTTGTCATATGGTGAAGATGGCT
CCAAATTCGCTTCAGTCTCTGTTTTCATTATCATTGTCGGTGTAATCATC
TTTGTTATTGGATTCTTGGGATGTTGTGGATCCATTCGTGAAAACTACTG
CATGGTCACTACCTTTGCTATTCTTCTCGGAATTATCTTTATTTTGGAAA
TTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAAGAAGATGGATGAATCT
GGAAGCAAATGCATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTG
GCTTCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACG
GTTATGAAGTTGTTTAAGTTGAAGATCACATCAGCAAATCACTCGATGAT
GCTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATTACT
CGACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTG
AATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCT
GTTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAA
AGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCA
TTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAACTCAGTGGTTTGGCA
CTTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTC
ATATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCA
TTGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCC
ATTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAAT
TATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGA
AGAAGATGGATGAATCTGGAAGCAAATGCATCAAGTATTTGATGTTCATT
TTCAACTTTATCTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00000564-exon-sc0000002-1575043694:711413..711701 | TCONS_00000564-exon-sc0000002-1575043694:711413..711701 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1575043694:710805..711074 | TCONS_00000564-exon-sc0000002-1575043694:710805..711074 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1575043694:710314..710631 | TCONS_00000564-exon-sc0000002-1575043694:710314..710631 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1575043694:709241..710153 | TCONS_00000564-exon-sc0000002-1575043694:709241..710153 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1510915933:711413..711701 | TCONS_00000564-exon-sc0000002-1510915933:711413..711701 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1510915933:710805..711074 | TCONS_00000564-exon-sc0000002-1510915933:710805..711074 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1510915933:710314..710631 | TCONS_00000564-exon-sc0000002-1510915933:710314..710631 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1510915933:709241..710153 | TCONS_00000564-exon-sc0000002-1510915933:709241..710153 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1491911889:711413..711701 | TCONS_00000564-exon-sc0000002-1491911889:711413..711701 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1491911889:710805..711074 | TCONS_00000564-exon-sc0000002-1491911889:710805..711074 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1491911889:710314..710631 | TCONS_00000564-exon-sc0000002-1491911889:710314..710631 | Clytia hemisphaerica | exon |
| TCONS_00000564-exon-sc0000002-1491911889:709241..710153 | TCONS_00000564-exon-sc0000002-1491911889:709241..710153 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000002 | supercontig | sc0000002:709241..711701 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
BLAST of TCONS_00000564 vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 1.063e-23 Identity = 78/243 (32.10%), Postives = 131/243 (53.91%), Query Frame = 2
Query: 233 ESGSKCIKYLMFIFNFIFWLXXXXXXXXXXXXXXXYGDYLSYGEDGSKFAXXXXXXXXXXXXXXXXXXLGCCGSIRENYCMVTTFAILLGIIFILEIVAGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCGRNNSTEYKNPGGNSTFCAANGAVASCYSDNTC-------DGTLYTKGCEASFVDFVKHNLXXXXXXXXXXXFIQLLGIIFACCLMKSIKDGYEVV 940
E G KC+K+L+++ F + LI +G + + G + V II VGV +F++ F+GCCG+ +ENYC++ TFAI L +I ++E+ A G+ +R KV + + + Y + + +LD Q +F CCG N T+++ S N SC + T + ++ +GC +++ N+ V+ A A+G+AF+++LGI+FACCL+KSI+ GYEV+
Sbjct: 4 EGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSL--LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTAS--ILDRMQADFKCCGAANYTDWEKIPSMSK----NRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM 238
The following BLAST results are available for this feature:
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