TCONS_00000564 (transcript) - C. hemisphaerica

Overview
NameTCONS_00000564
Unique NameTCONS_00000564
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=transcript|length=1790bp
ATGTCAGCAATTCGAACAATGACGTCAATTGCGATATgttaaatgttttg
atttttataaagataCACAAAGGGGGAGAGCGAataaatttcattggctg
gATTTGAATTAAAAAGGGATAAATTTTCTGTGAATTACGCCCCATTGCAA
GCTGCAGCCTCGTGATCGAAGGACGAACGTGTTAGAGTTTGAAGTTTGAC
CTGTTTTCACACTAAATTATATCATCATGGATGAATCTGGAAGCAAATGC
ATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTGGCTCAGTGGTTT
GGCACTTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATT
TGTCATATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATT
ATCATTGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGG
ATCCATTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCG
GAATTATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTAC
AGGAAGAAGGTTGAAGATCACATCAGCAAATCACTCGATGATGCTGTCag
caaatatttcaatgaaGACCAACCAGGAGCCAAAGAATTACTCGACTGGG
CTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTGAATACAAA
AACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCTGTTGCATC
TTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAAAGGATGTG
AAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCATTGGAGCA
GTTGCTATTGGTGTTGCCTTTATCCAACTTCTTGGAATCATCTTTGCCTG
CTGTCTCATGAAATCTATCAAGGACGGTTATGAAGTTGTTTAAATACTTA
AAACGAGACTCAGAATGACACCCAAAGACTTGAATTCCACTCTTTCGTCA
TTTACGTGGAAATTCAACTTGCACTAAACATGGGAAAAGTATCCAGAAGA
TTGGAATACGTTGTAAATGATGCTCATAGAATTTTTTACTAAGTTATAAA
TACATTACATAACGCCCTtagtattttttcattcaattttttaatagcaa
aaattataatttaagATTCAATTCTTTAGGGTTTTATGTGGAAAGAATCT
TATTTTATTTAGGGATACAAATTATTTTGTTCGTCTTCAGATACACAGAA
AAGAAACGTTTTAAAACCCAACCCTTTTACACActtctttttttgtaaga
atttgaaaatgatgaaattagtcaaaaaattaagaacatcacCATTATGA
AATTTGGCAGCAGAACCTAAGAGTGCTATTTTTGGTTCATTTATAACTGT
AAATTTCCTATTATCCCCAATAAGGCTCGTCAAAATGCTATTATATTATG
CTTCAGGTTTGTGAATTACTTGTTAATTTTaccattctcataaaaaagcg
tGTTTGTATTTTATCTCCTGGGTAGTGAATCTgactttgttttttcaaaa
aatataatattattgACACCAACCATTCTAACTGTGCAAATATGTTAACA
AATGTTGAAtggtttattcagtttttttcgatcataaattttcctttttc
tctttctttgaaGATGATGTGATTGCGATTATATTATAACACTTCTTTTG
CTTCAAATCTTCAAATCTAAATGAAATTTCAATACGTATAAAATTTTATT
CAGGTGTAAATTAACTTCGCTTGACCTACAGTgtttttct
Run BLAST on NCBI

protein sequence of TCONS_00000564-protein

>TCONS_00000564-protein ID=TCONS_00000564-protein|Name=TCONS_00000564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MDESGSKCIKYLMFIFNFIFWLSGLALIIIGSIIKAKYGDYLSYGEDGSK
FASVSVFIIIVGVIIFVIGFLGCCGSIRENYCMVTTFAILLGIIFILEIV
AGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCG
RNNSTEYKNPGGNSTFCAANGAVASCYSDNTCDGTLYTKGCEASFVDFVK
HNLAVIGAVAIGVAFIQLLGIIFACCLMKSIKDGYEVV
Run BLAST on NCBI

transcript from alignment at sc0000002:709241..711701-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=transcript|length=2461bp|location=Sequence derived from alignment at sc0000002:709241..711701- (Clytia hemisphaerica)
ATGTCAGCAATTCGAACAATGACGTCAATTGCGATATGTTAAATGTTTTG ATTTTTATAAAGATACACAAAGGGGGAGAGCGAATAAATTTCATTGGCTG GATTTGAATTAAAAAGGGATAAATTTTCTGTGAATTACGCCCCATTGCAA GCTGCAGCCTCGTGATCGAAGGACGAACGTGTTAGAGTTTGAAGTTTGAC CTGTTTTCACACTAAATTATATCATCATGGATGAATCTGGAAGCAAATGC ATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTGGGTGAGTAAAAT TTTTATGTGATATCTACTCCGACATTTTGGATATCATCATTGTATGTTTC ACTTCNTTTATGTGATATCTACTCCTACATTTTGGATATCATCATTGTAT GTTTCACTTCTTGACTCAATTAAAATGACTTTTTGTTACGCTTATCATAT AAGCCTCTAAACTATAATGTGATAAGTTTAAAAAAGGTCTAATGCCTTTG AATTAGACAAATAGGCTGTTGAAACTTTTTCAATTAGGATTGTGCTAACT TGATGTACCACTGTTTTATTTTCATACAACTGTGTTTATCGTGAAAAGTA TTATGAATATTCACTATCACATTACAGCTCAGTGGTTTGGCACTTATTAT CATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTCATATGGTG AAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCATTGTCGGT GTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCCATTCGTGA AAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAATTATCTTTA TTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAAGAAGGTA AGATGCATGTAATTATTTTGATAACAGAAATCACATATCATTCTAGATGT ATAGCTATATAACATAGATATATCTACATTCATCCTTTTATAGGCATAAA TTAAATAAAATCTTGTAATTGCCTGTAAAAATTTGTCAATAGAATTCTAA AACTATATTCATCCTTTCAGGTTGAAGATCACATCAGCAAATCACTCGAT GATGCTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATT ACTCGACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTA CTGAATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGT GCTGTTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACAC TAAAGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAG TCATTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAAGTAAGTAAAATC TTGTGGATGACATTTGCTTCCATGTGGGGATTCACTAGGAATTAGTTTTA ATAATACCAGACACAACATGCATTCTTTACATTTTACACACTCATGTCAT GGAAATCCTTTACAAAATCATTCATTAAAATTTCTGTTATCTTTTTAGCT TCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACGGTT ATGAAGTTGTTTAAATACTTAAAACGAGACTCAGAATGACACCCAAAGAC TTGAATTCCACTCTTTCGTCATTTACGTGGAAATTCAACTTGCACTAAAC ATGGGAAAAGTATCCAGAAGATTGGAATACGTTGTAAATGATGCTCATAG AATTTTTTACTAAGTTATAAATACATTACATAACGCCCTTAGTATTTTTT CATTCAATTTTTTAATAGCAAAAATTATAATTTAAGATTCAATTCTTTAG GGTTTTATGTGGAAAGAATCTTATTTTATTTAGGGATACAAATTATTTTG TTCGTCTTCAGATACACAGAAAAGAAACGTTTTAAAACCCAACCCTTTTA CACACTTCTTTTTTTGTAAGAATTTGAAAATGATGAAATTAGTCAAAAAA TTAAGAACATCACCATTATGAAATTTGGCAGCAGAACCTAAGAGTGCTAT TTTTGGTTCATTTATAACTGTAAATTTCCTATTATCCCCAATAAGGCTCG TCAAAATGCTATTATATTATGCTTCAGGTTTGTGAATTACTTGTTAATTT TACCATTCTCATAAAAAAGCGTGTTTGTATTTTATCTCCTGGGTAGTGAA TCTGACTTTGTTTTTTCAAAAAATATAATATTATTGACACCAACCATTCT AACTGTGCAAATATGTTAACAAATGTTGAATGGTTTATTCAGTTTTTTTC GATCATAAATTTTCCTTTTTCTCTTTCTTTGAAGATGATGTGATTGCGAT TATATTATAACACTTCTTTTGCTTCAAATCTTCAAATCTAAATGAAATTT CAATACGTATAAAATTTTATTCAGGTGTAAATTAACTTCGCTTGACCTAC AGTGTTTTTCT

Coding sequence (CDS) from alignment at sc0000002:709241..711701-

>TCONS_00000564 ID=TCONS_00000564|Name=TCONS_00000564|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0000002:709241..711701- (Clytia hemisphaerica)
CTTCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACGG
TTATGAAGTTGTTTAAGTTGAAGATCACATCAGCAAATCACTCGATGATG
CTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATTACTC
GACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTGA
ATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCTG
TTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAAA
GGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCAT
TGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAACTCAGTGGTTTGGCAC
TTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTCA
TATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCAT
TGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCCA
TTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAATT
ATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAA
GAAGATGGATGAATCTGGAAGCAAATGCATCAAGTATTTGATGTTCATTT
TCAACTTTATCTTCTGGCTTCTTGGAATCATCTTTGCCTGCTGTCTCATG
AAATCTATCAAGGACGGTTATGAAGTTGTTTAAGTTGAAGATCACATCAG
CAAATCACTCGATGATGCTGTCAGCAAATATTTCAATGAAGACCAACCAG
GAGCCAAAGAATTACTCGACTGGGCTCAACAAGAATTTGACTGCTGTGGA
CGCAACAATAGTACTGAATACAAAAACCCAGGAGGAAACTCAACATTCTG
TGCTGCTAATGGTGCTGTTGCATCTTGCTACTCTGACAATACGTGTGACG
GAACCCTCTACACTAAAGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAA
CACAACTTAGCAGTCATTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCA
ACTCAGTGGTTTGGCACTTATTATCATTGGATCAATCATCAAAGCTAAAT
ATGGAGACTATTTGTCATATGGTGAAGATGGCTCCAAATTCGCTTCAGTC
TCTGTTTTCATTATCATTGTCGGTGTAATCATCTTTGTTATTGGATTCTT
GGGATGTTGTGGATCCATTCGTGAAAACTACTGCATGGTCACTACCTTTG
CTATTCTTCTCGGAATTATCTTTATTTTGGAAATTGTTGCTGGAGCCCTT
GGATTTGCCTACAGGAAGAAGATGGATGAATCTGGAAGCAAATGCATCAA
GTATTTGATGTTCATTTTCAACTTTATCTTCTGGCTTCTTGGAATCATCT
TTGCCTGCTGTCTCATGAAATCTATCAAGGACGGTTATGAAGTTGTTTAA
GTTGAAGATCACATCAGCAAATCACTCGATGATGCTGTCAGCAAATATTT
CAATGAAGACCAACCAGGAGCCAAAGAATTACTCGACTGGGCTCAACAAG
AATTTGACTGCTGTGGACGCAACAATAGTACTGAATACAAAAACCCAGGA
GGAAACTCAACATTCTGTGCTGCTAATGGTGCTGTTGCATCTTGCTACTC
TGACAATACGTGTGACGGAACCCTCTACACTAAAGGATGTGAAGCCTCTT
TCGTTGATTTTGTCAAACACAACTTAGCAGTCATTGGAGCAGTTGCTATT
GGTGTTGCCTTTATCCAACTCAGTGGTTTGGCACTTATTATCATTGGATC
AATCATCAAAGCTAAATATGGAGACTATTTGTCATATGGTGAAGATGGCT
CCAAATTCGCTTCAGTCTCTGTTTTCATTATCATTGTCGGTGTAATCATC
TTTGTTATTGGATTCTTGGGATGTTGTGGATCCATTCGTGAAAACTACTG
CATGGTCACTACCTTTGCTATTCTTCTCGGAATTATCTTTATTTTGGAAA
TTGTTGCTGGAGCCCTTGGATTTGCCTACAGGAAGAAGATGGATGAATCT
GGAAGCAAATGCATCAAGTATTTGATGTTCATTTTCAACTTTATCTTCTG
GCTTCTTGGAATCATCTTTGCCTGCTGTCTCATGAAATCTATCAAGGACG
GTTATGAAGTTGTTTAAGTTGAAGATCACATCAGCAAATCACTCGATGAT
GCTGTCAGCAAATATTTCAATGAAGACCAACCAGGAGCCAAAGAATTACT
CGACTGGGCTCAACAAGAATTTGACTGCTGTGGACGCAACAATAGTACTG
AATACAAAAACCCAGGAGGAAACTCAACATTCTGTGCTGCTAATGGTGCT
GTTGCATCTTGCTACTCTGACAATACGTGTGACGGAACCCTCTACACTAA
AGGATGTGAAGCCTCTTTCGTTGATTTTGTCAAACACAACTTAGCAGTCA
TTGGAGCAGTTGCTATTGGTGTTGCCTTTATCCAACTCAGTGGTTTGGCA
CTTATTATCATTGGATCAATCATCAAAGCTAAATATGGAGACTATTTGTC
ATATGGTGAAGATGGCTCCAAATTCGCTTCAGTCTCTGTTTTCATTATCA
TTGTCGGTGTAATCATCTTTGTTATTGGATTCTTGGGATGTTGTGGATCC
ATTCGTGAAAACTACTGCATGGTCACTACCTTTGCTATTCTTCTCGGAAT
TATCTTTATTTTGGAAATTGTTGCTGGAGCCCTTGGATTTGCCTACAGGA
AGAAGATGGATGAATCTGGAAGCAAATGCATCAAGTATTTGATGTTCATT
TTCAACTTTATCTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000335XLOC_000335Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000564-exon-sc0000002-1575043694:711413..711701TCONS_00000564-exon-sc0000002-1575043694:711413..711701Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1575043694:710805..711074TCONS_00000564-exon-sc0000002-1575043694:710805..711074Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1575043694:710314..710631TCONS_00000564-exon-sc0000002-1575043694:710314..710631Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1575043694:709241..710153TCONS_00000564-exon-sc0000002-1575043694:709241..710153Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1510915933:711413..711701TCONS_00000564-exon-sc0000002-1510915933:711413..711701Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1510915933:710805..711074TCONS_00000564-exon-sc0000002-1510915933:710805..711074Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1510915933:710314..710631TCONS_00000564-exon-sc0000002-1510915933:710314..710631Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1510915933:709241..710153TCONS_00000564-exon-sc0000002-1510915933:709241..710153Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1491911889:711413..711701TCONS_00000564-exon-sc0000002-1491911889:711413..711701Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1491911889:710805..711074TCONS_00000564-exon-sc0000002-1491911889:710805..711074Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1491911889:710314..710631TCONS_00000564-exon-sc0000002-1491911889:710314..710631Clytia hemisphaericaexon
TCONS_00000564-exon-sc0000002-1491911889:709241..710153TCONS_00000564-exon-sc0000002-1491911889:709241..710153Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00000564-proteinTCONS_00000564-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:709241..711701 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1917.3 1996.28 851.034 807.001 2370.55 1884.62 2977.03 3216.77 2328.8 3232.26 2905.07 1781.69 1340.04 1177.25 1520.66 2064.32 439.099 492.434 1218.17 1779.58 237.813 244.27 1262.36 1056.7 245.916 311.719 870.354 754.1 1322.8 1329.75
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
BLAST of TCONS_00000564 vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.063e-23
Identity = 78/243 (32.10%), Postives = 131/243 (53.91%), Query Frame = 2
Query:  233 ESGSKCIKYLMFIFNFIFWLXXXXXXXXXXXXXXXYGDYLSYGEDGSKFAXXXXXXXXXXXXXXXXXXLGCCGSIRENYCMVTTFAILLGIIFILEIVAGALGFAYRKKVEDHISKSLDDAVSKYFNEDQPGAKELLDWAQQEFDCCGRNNSTEYKNPGGNSTFCAANGAVASCYSDNTC-------DGTLYTKGCEASFVDFVKHNLXXXXXXXXXXXFIQLLGIIFACCLMKSIKDGYEVV 940
            E G KC+K+L+++    F    + LI +G   +      +  G        + V II VGV +F++ F+GCCG+ +ENYC++ TFAI L +I ++E+ A   G+ +R KV    + +    +  Y   +   +  +LD  Q +F CCG  N T+++     S     N    SC  + T        +  ++ +GC      +++ N+ V+ A A+G+AF+++LGI+FACCL+KSI+ GYEV+
Sbjct:    4 EGGMKCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSL--LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTAS--ILDRMQADFKCCGAANYTDWEKIPSMSK----NRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM 238          
The following BLAST results are available for this feature:
BLAST of TCONS_00000564 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD631.063e-2332.10CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2[more]
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