TCONS_00000561-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000561-protein
Unique NameTCONS_00000561-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000561-protein ID=TCONS_00000561-protein|Name=TCONS_00000561-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
MDGSCNKCIKYLMFIFNFIFWLSGLALIIIGSYMKTRYGDYLSYGDGYKF
LSVSVFVIVLGVIIFILGFLGCCGAIKENYCMITTFAILMSIILILQIAA
GVLGFVYKGKVETIVENTLNGAVQKYFDDSQPGAKTLLDWAQQKFECCGI
KGPGDYRQPSTTSSYYCAKSGGVASCYSDNKCGSGVQYGEGCEQSVIDIA
KNNMLLCGAFAIAFALIQILGVTFACCLMKSVRNSYETV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000333XLOC_000333Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000561TCONS_00000561Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR008952Tetraspanin_EC2
IPR018499Tetraspanin/Peripherin
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 206..232
score: 28.53
coord: 50..76
score: 38.38
coord: 11..34
score: 38.03
coord: 77..105
score: 32.13
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 1..239
e-value: 1.5E-53
score: 179.4
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 105..204
e-value: 7.1E-13
score: 48.3
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 105..204
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 9..230
e-value: 7.2E-50
score: 169.8
IPR018503Tetraspanin, conserved sitePROSITEPS00421TM4_1coord: 61..83
NoneNo IPR availableCDDcd03127tetraspanin_LELcoord: 105..204
e-value: 4.5587E-14
score: 64.0627

Blast
[Close]
BLAST of TCONS_00000561-protein vs. Swiss-Prot (Human)
Match: CD63 (CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.142e-38
Identity = 74/239 (30.96%), Postives = 132/239 (55.23%), Query Frame = 0 
Query:    7 KCIKYLMFIFNFIFWLSGLALIIIGSYMKTRYGDYLSYGDGYKFLSVSVFVIVLGVIIFILGFLGCCGAIKENYCMITTFAILMSIILILQIAAGVLGFVYKGKVETIVENTLNGAVQKYFDDSQPGAKTLLDWAQQKFECCGIKGPGDYRQPSTTSSYYCAKSGGVASCYSDNKCGSGVQYG------EGCEQSVIDIAKNNMLLCGAFAIAFALIQILGVTFACCLMKSVRNSYETV 239
            KC+K+L+++    F    + LI +G   +      +  G     L + V +I +GV +F++ F+GCCGA KENYC++ TFAI +S+I+++++AA + G+V++ KV +   N     ++ Y  ++     ++LD  Q  F+CCG     D+ +  + S     K+    SC  +   G G+ +       EGC + +    + N+L+  A A+  A +++LG+ FACCL+KS+R+ YE +
Sbjct:    8 KCVKFLLYVLLLAFCACAVGLIAVGVGAQLVLSQTIIQGATPGSL-LPVVIIAVGVFLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVMSEFNNNFRQQMENYPKNNHTA--SILDRMQADFKCCGAANYTDWEKIPSMS-----KNRVPDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRKNVLVVAAAALGIAFVEVLGIVFACCLVKSIRSGYEVM 238
The following BLAST results are available for this feature:
BLAST of TCONS_00000561-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CD631.142e-3830.96CD63 antigen OS=Homo sapiens GN=CD63 PE=1 SV=2[more]
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