|
|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000499-protein ID=TCONS_00000499-protein|Name=TCONS_00000499-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2570bp
MDNRSGGQGNPYDRPYYGDPNVLRQQIPGYANSPGIYPYSQQQQQDGFSG
RRPGQDQLGLNNHATARTNSLTSPPQSTNPWMHSYHNQTQPNSMSPNFNM
NIPNMFHTRWEQDQASLLQQREMMQREEHARMMYRERLQMQERENQLKIQ
MQKEQERELQLQREKEAQLQREREAKVQREREAQLERERQAQLQRERQAA
LEKERQLQLQREREAQLQREAQLQYQMQREMQLEREREAMAIRERDAILE
RDRKAMLYRDAYFAQQHQPQQFPNHFGSMQNTLPNLNFTQSNESMSNQFN
FYNQPSMHSNGNLPSSTSSSILNFSMDQIFNPNKISESPVSKAASTSSSF
HFPISSPSTVSSTTTSSTTTTTTALRKSSSNSFDNGIINSIVSDKGFLTS
PLDSNSQFMKTWQELQDMDLSEIEKNVLGPKDQDSRNTPLADTPFSNPTT
PTEMNGLPPKPIDSNLNNIVNSLPENSLDLNKHSIETKESLQITNTEDTP
PQQNLLNHPRNLLSVSQTAQASSNYTNTSVTQSDINLTHVSENLLTHNRS
CVSSFVSPTSSDLYCNQDFDKQSKRGDDIKHEEYSNELQSNHSKSYEKQS
SSSPTTLKQKSKQSFSSIESFLGMSSDSKKTEDNDNERINDTTKKRERIP
SSDVQDRISVIKPLPISSPQISNTSSPLDIVNNDHDTLKSPQAIEKLKSP
EEIQKVIDHSESAPVTLIHPSMRLKKQRSLSNSSMTATSPQPVMEKEKPK
TSNRRPLHPSMRLQTNKNNTKVDKAEPKKSKVENLDNSFDSGKNILHSPK
TGRYQSELTSTSTKSSTRKLSPFTPPTVTSPLTSPPLVSPGIRSPFNGKP
LTGKPFSTGKPVHGGKPASYSAQGGGKPMHMGGKPTSFSSHMTVKEEKSP
EKEHTGKPLSFLKSMVEESSKNTNTLQGKKITGKKRPRKETIEKPASKET
LKKDDISKSPDLKTSRITKMISTPPSSQKLTDNIKTKKPPQEKQAPVKKL
PVKRSPKVSPPKREAVKDSPLKENPFRKSIVQAKSKPVLTKQKNLSKENI
EELSTSEEKDSPKKTFKFKGITFDAKTEDDDSSDSDSDSSSNSDSGSSSD
SSDNSGTEEEIEDIEDEDDDDTASQTSSVTSSPAKKTQRAGQKRKAVPDN
AEVIASLKKRKVVDLDLIKAPLKFGWRRQTRLRPNNAGDGLRGDVYYYSP
CGKKLRTYPELNSYIFRNDVVDVDLKNFSFSTKLRVGEFMQAKDGSKFVT
LTEEEIDETFVMMEERRSASAKRAEEKKREKREKEEKQRQILEERKKKRE
EALERKRSKEEERRKVQKDKALEAKMKKEKEKEAAQEAKRLKEEAIMLKK
LERQAQMEASRIAKREKVQNMLAEKQKMKEQREHERVMKIENQKVEKEMK
LQAIENEKERKRLQQVKSKVSEKEKRKRELVMMKAYEAQRRAEERERLKE
QKKLEKTLIRQRKLEQKRYERMISKELKKPIDDMALNDLKPLPELPRVTN
INIPGKAYADILMVQEFVHAFGHVIDIDPEKEFPSMGELQSSLLCESGSD
EAIFTACQALLFYALYDPGVSGPYAKTSLGSDLTSIELNENNISEVLRLF
ILSRNEGKQHTLSDQLTKYPLEALSPSSKAAVLAFIVNELLCGKSVSREI
DGSLENISNMRRDKWNLEGDIRKLKADLLSKQPKKAASDQQQNLKNNKGE
SKKRDSDEENNSDDEGTTITTAKESNIDLNDTAEDTEAENQPEMVNPTTL
DQMEKKLRLMEKKHARYRKKLFDSSHTIRGINLGQDRYRRRYFVLPNAGG
IYVEGLESGFFDEETNVKTKEEKEECKEHLDSLLTTLKSPTVLKSPVTGP
KTPATNTPSVSALSSNSNELLKPKQESPIQTQQQQKQIKVENPCSSDSSY
VKSWFSLRTKKRCESYKTSAIRETPKERKHSLIVAPRIERLADDHQFLES
IYSCYSTTSPGGKNTLLPVSRFPLSKESMHRNSLLGLPAELDMNLLIQQD
PQKAAEILEIQTAKPQEIPPEMQAGWWRITDPEQMQRLNKCAHARGMRER
NLQKTVVRFQDYTNSSCKVDHLAFSLLLPDEESESKDKVTEDDSSVATST
DTNKSIQDKWYPQLAYASDKAILIEVEELEEKVFSASLQVKGWRLSQKIS
PALLLSTSNDQAEYDPPEDKYPIRIAASRLLALELGIERRYMKPPFRTPD
SLPKPDAPEAKEEPVKNPKATAQLEKWREAVSEAKSSAQLSMCITALFEC
VAWEKSIMKVFCILCRKSDNEERLLLCDACDRGCHTYCCKPKFDKIPDGD
WFCQDCVLMASGSDQCYKCKSKTGRRLKCAFCPRHYHMDCLEPPLHKTPR
SPWSCPVCKKTRSKSKPPQRKKPRAEELLKKEEQSKQKSMSNSRVQTSKD
MEPCRFILNEMENHESSWPFLVPVNMKQFPEYYKVIKHPMDFHTMKTKLR
DYQYKSKEEFARDARLVFFNCKTYNEDESEVGCAGEAMRSFFEKRWTALK
KGVSSTNSDNKFHTNKKGEGVESSGDEGEDAQEEGEGDEEVSSSSSEEIS
SESESSEVEEDSENETDSKT Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0003677 | DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1750..1770 |
| None | No IPR available | COILS | Coil | Coil | coord: 1657..1677 |
| None | No IPR available | COILS | Coil | Coil | coord: 1267..1358 |
| None | No IPR available | COILS | Coil | Coil | coord: 1361..1385 |
| None | No IPR available | COILS | Coil | Coil | coord: 1387..1426 |
| None | No IPR available | COILS | Coil | Coil | coord: 1433..1461 |
| None | No IPR available | COILS | Coil | Coil | coord: 124..220 |
| None | No IPR available | GENE3D | 3.30.890.10 | | coord: 1169..1234
e-value: 7.1E-17
score: 60.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 347..380 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1374..1393 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2503..2570 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..90 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1680..1741 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 724..1149 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1841..1891 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 584..679 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 271..290 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2083..2103 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2194..2220 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1266..1334 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2347..2398 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 428..461 |
| None | No IPR available | CDD | cd15545 | PHD_BAZ2A_like | coord: 2261..2306
e-value: 6.65936E-28
score: 108.937 |
| IPR001487 | Bromodomain | PRINTS | PR00503 | BROMODOMAIN | coord: 2429..2445
score: 48.08
coord: 2415..2428
score: 37.11
coord: 2463..2482
score: 40.22
coord: 2445..2463
score: 30.32 |
| IPR001487 | Bromodomain | SMART | SM00297 | bromo_6 | coord: 2393..2501
e-value: 3.0E-36
score: 136.4 |
| IPR001487 | Bromodomain | PFAM | PF00439 | Bromodomain | coord: 2404..2481
e-value: 7.8E-20
score: 70.6 |
| IPR001487 | Bromodomain | GENE3D | 1.20.920.10 | | coord: 2370..2519
e-value: 4.3E-38
score: 129.8 |
| IPR001487 | Bromodomain | PROSITE | PS50014 | BROMODOMAIN_2 | coord: 2412..2482
score: 21.676 |
| IPR001487 | Bromodomain | SUPERFAMILY | 47370 | Bromodomain | coord: 2400..2501 |
| IPR001965 | Zinc finger, PHD-type | SMART | SM00249 | PHD_3 | coord: 2315..2359
e-value: 1.8E-7
score: 40.8
coord: 2261..2307
e-value: 2.6E-8
score: 43.6 |
| IPR001739 | Methyl-CpG DNA binding | SMART | SM00391 | TAM_2 | coord: 1165..1242
e-value: 1.2E-19
score: 81.2 |
| IPR001739 | Methyl-CpG DNA binding | PFAM | PF01429 | MBD | coord: 1170..1236
e-value: 1.0E-14
score: 53.9 |
| IPR001739 | Methyl-CpG DNA binding | PROSITE | PS50982 | MBD | coord: 1162..1235
score: 16.661 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 2311..2369
e-value: 7.5E-11
score: 41.2 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 2257..2310
e-value: 5.2E-11
score: 41.7 |
| IPR019787 | Zinc finger, PHD-finger | PFAM | PF00628 | PHD | coord: 2261..2307
e-value: 1.9E-9
score: 37.2 |
| IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 2313..2361
score: 9.356 |
| IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 2259..2309
score: 9.926 |
| IPR018359 | Bromodomain, conserved site | PROSITE | PS00633 | BROMODOMAIN_1 | coord: 2417..2474 |
| IPR018501 | DDT domain | PROSITE | PS50827 | DDT | coord: 1505..1571
score: 10.253 |
| IPR016177 | DNA-binding domain | SUPERFAMILY | 54171 | DNA-binding domain | coord: 1167..1240 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 2313..2369 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 2252..2321 |
Blast
BLAST of TCONS_00000499-protein vs. Swiss-Prot (Human)
Match: BAZ2B (Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3) HSP 1 Score: 411.764 bits (1057), Expect = 9.175e-116 Identity = 252/695 (36.26%), Postives = 403/695 (57.99%), Query Frame = 0
Query: 1158 KKRKVVDLDLIKAPLKFGWRRQTRLRPNNAGDGLRGDVYYYSPCGKKLRTYPELNSYIFRNDVVDVDLKNFSFSTKLRVGEFMQAKDG---SKFVTLTEEEIDETFVMMEERRSASAKRAEEKKREKREKEEKQRQILEERKKKREEALERKRSKEEERRKVQKDKALEAKMKKEKEKEAAQEAKRLKEEAIMLKKLERQAQMEASRIAKREKVQNMLAEKQKMKEQ----REHERVMKIENQKVEKEMKLQAIE----------------------NEKERKRLQQVKSKVSEKEKRKRELVMMKAYEAQRRAEERERLKEQKKLEKTLIRQRKLEQKRYERMISKELKKPIDDMALNDLKPLPELPRVTNINIPGKAYADILMVQEFVHAFGHVIDIDPEKEFPSMGELQSSLLCESGSDEAIFTACQALLFYALYDPG-VSGPYAKTSLGSDLTSIELNENNISEVLRLFILSRNEGKQHTLSDQLTKYPLEALSPSSKAAVLAFIVNELLCGKSVSREIDGSLENISNMRRDKWNLEGDIRKLKADLLSKQPKKAAS------DQQQNLKN-NKGESKKRDSDEENNSDDEGTTITTAKESNIDLNDTAEDTE------AENQPEMVNPTTLDQMEKKLRLMEKKHARYRKKLFDSSHTIRGINLGQDRYRRRYFVLPNAGGIYVEGLESG 1809
K+R+V D ++ PL++GW+R+TR+R N G L+G+V YY+PCGKKLR YPE+ Y+ RN ++D+ NFSFS K+RVG+F +A+DG ++ L EE++ ME RR R +R++ REE+ R R ++ V + L+ K K AQE R + +L+KL++Q Q ++ AK+++ EK+K KEQ ++ E++ +I+ ++EKE++ Q I EKE +R Q V K E+E+R++ +++MKA EA+++AEE+ERLK++K+ EK L ++RKLEQ+R E ++KELKKP +DM L D KPLPELPR+ + + G ++D LMV +F+ FG V+ D + P++ LQ LL S + LL A+ DPG ++G AKT+LG L ++ +N +N+SE+L++F+ Q L++ L +A +P+ KA+VLAF++NEL C KSV EID +++ +SN+RRDKW +EG +RKL+ K K+ S ++Q L G ++R + + DD+ + + + + ED + E++ E +++++EK++ + K+ ++YR+KLFD+SH++R + GQDRYRRRY++LP GGI+VEG+ESG
Sbjct: 735 KRRRVTDERELRIPLEYGWQRETRIR--NFGGRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRDNFSFSAKIRVGDFYEARDGPQGMQWCLLKEEDVIPRIRAMEGRRG--------------------RPPNPDRQRAREES--RMRRRKGRPPNVGNAEFLDNADAKLLRKLQAQEIARQAAQIKLLRKLQKQEQARVAKEAKKQQAIMAAEEKRKQKEQIKIMKQQEKIKRIQQIRMEKELRAQQILEAKKKKKEEAANAKLLEAEKRIKEKEMRRQQAVLLKHQERERRRQHMMLMKAMEARKKAEEKERLKQEKRDEKRLNKERKLEQRRLELEMAKELKKPNEDMCLADQKPLPELPRIPGLVLSGSTFSDCLMVVQFLRNFGKVLGFDVNIDVPNLSVLQEGLLNIGDSMGEVQDLLVRLLSAAVCDPGLITGYKAKTALGEHLLNVGVNRDNVSEILQIFM--EAHCGQTELTESLKTKAFQAHTPAQKASVLAFLINELACSKSVVSEIDKNIDYMSNLRRDKWVVEGKLRKLRIIHAKKTGKRDTSGGIDLGEEQHPLGTPTPGRKRRRKGGDSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQYRRKLFDASHSLRSVMFGQDRYRRRYWILPQCGGIFVEGMESG 1403 HSP 2 Score: 333.954 bits (855), Expect = 9.346e-92 Identity = 199/515 (38.64%), Postives = 266/515 (51.65%), Query Frame = 0
Query: 2015 PQEIPPEMQAGWWRITDPEQMQRLNKCAHARGMRERNLQKTVVRFQDYTNSSC-KVDHLAFSLLLPDEESESKDKVTEDDSSVATSTDTNKSIQDKWYPQLAYASDKAILIEVEELEEKVFSASLQVKGWRLSQKISPALLLS------------------TSNDQAEYDPPEDKY--PIRIAASRLLALELGIERRYMKPPFRTPDSLPKPDAPEAKEEPVKNPKATAQLEKWREAVSEAKSSAQLSMCITALFECVAWEKSIMKVFCILCRKSDNEERLLLCDACDRGCHTYCCKPKFDKIPDGDWFCQDCVLMASGSDQCYKCK-----------SKTGRRLKCAFCPRHYHMDCLEPPLHKTPRSPWSCPVCKKTRSKSKPPQRKKPRAEELLKKEEQSKQKSMSNSRVQTSKDMEPCRFILNEMENHESSWPFLVPVNMKQFPEYYKVIKHPMDFHTMKTKLRDYQYKSKEEFARDARLVFFNCKTYNEDESEVGCAGEAMRSFFEKRWT 2497
P+ IP EMQ GWWRI DPE ++ L K H RG+RE+ LQK + + DY +C K +A L +EE++ + E N S++++ A D ++L +VE+LE +V SASLQVKGW + S L T D++ E K P+ IA +RL LE IERR EE + L WR A+SEA+S+AQ+++CI L + +AWEKSIMKV+C +CRK DNEE LLLCD CD+GCHTYC +PK IPDGDWFC C+ ASG Q K K SK G+++ L S + +K +++K + +Q S+ + SKD+ C IL EME HE +WPFL+PVN+K P Y KVIK PMDF T++ KL QY + E FA D RLVF NC+T+NED+S++G AG MR +FEK+WT
Sbjct: 1707 PKPIPEEMQFGWWRIIDPEDLKALLKVLHLRGIREKALQKQIQKHLDYITQACLKNKDVAIIELNENEENQVTRDIVE-----------NWSVEEQ-----AMEMDLSVLQQVEDLERRVASASLQVKGWMCPEPASEREDLVYFEHKSFTKLCKEHDGEFTGEDESSAHALERKSDNPLDIAVTRLADLERNIERRI--------------------EEDI-----APGLRVWRRALSEARSAAQVALCIQQLQKSIAWEKSIMKVYCQICRKGDNEELLLLCDGCDKGCHTYCHRPKITTIPDGDWFCPACIAKASG--QTLKIKKLHVKGKKTNESKKGKKVT----------------LTGDTEDEDSASTSSSLKRGNKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWT 2162
The following BLAST results are available for this feature:
|
