TCONS_00000422-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000422-protein
Unique Name	TCONS_00000422-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	208

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000422-protein ID=TCONS_00000422-protein|Name=TCONS_00000422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MKFHERCGKSISFSKTRDCAERKEGYDNGIVFSCKPLKKSQIFEVKIDAI
EEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHG
SQEFAINKSLYGLSGVSDIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDV
DLYVIVDIYGAVTKVSCLQDKVLSLKEHSRRVIQNIIKDENDIDDLNIPK
VLKVFLKL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000274	XLOC_000274	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000422	TCONS_00000422	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006573	NHR_dom
IPR024048	VHL_alpha_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006573	Neuralized homology repeat (NHR) domain	SMART	SM00588	27b	coord: 1..114 e-value: 6.9E-11 score: 52.2
IPR006573	Neuralized homology repeat (NHR) domain	PFAM	PF07177	Neuralized	coord: 3..168 e-value: 3.2E-36 score: 124.5
IPR006573	Neuralized homology repeat (NHR) domain	PROSITE	PS51065	NHR	coord: 1..170 score: 32.837
IPR024048	von Hippel-Lindau disease tumour suppressor, alpha domain	GENE3D	1.10.750.10		coord: 171..207 e-value: 2.5E-4 score: 20.4
None	No IPR available	CDD	cd12887	SPRY_NHR_like	coord: 2..166 e-value: 9.70178E-43 score: 142.256

Blast

[Close]

BLAST of TCONS_00000422-protein vs. Swiss-Prot (Human)
Match: NEUL4 (Neuralized-like protein 4 OS=Homo sapiens GN=NEURL4 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.049e-25
Identity = 63/190 (33.16%), Postives = 107/190 (56.32%), Query Frame = 0

Query:    3 FHERCGKSISFSKTRDCAERK---EGYDNGIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQ----EFAINKSLYGLSGVSDIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDVDLYVIVDIYGAVTKVSCLQDKVLSLKEHSRRVIQN 185
            FHE+CG  I  S     AER+   + ++NG+V + +PL+ +++FE++ID + +KW+GSI +GVTT +PN L Y  T+T++ S +   S   +    K   G++    EF++++   G     D IG+  + N  +H + NG+  + VA  L   V +Y +VD+YG   KV+ + +       HS R+ +N
Sbjct:  320 FHEKCGTLIKLSNNNKTAERRRPLDEFNNGVVMTNRPLRDNEMFEIRIDKLVDKWSGSIEIGVTTHNPNSLEYPATMTNLQSGTIMMSGCGILTNGK---GTRREYCEFSLDELQEG-----DHIGLTRKSNSALHFFINGID-QGVATPLTPPV-VYGVVDLYGMAVKVTIVHN-----NNHSDRLRRN 494

HSP 2 Score: 85.5001 bits (210), Expect = 2.331e-19
Identity = 50/173 (28.90%), Postives = 90/173 (52.02%), Query Frame = 0

Query:    3 FHERCGKSISFSKTRDCAERKEGYDN---GIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQEFAINKSLYGLSGVS--DIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDVDLYVIVDIYGAVTKVSCLQD 170
            FH  CG+  + +     A R    D+   G+V S + L+  ++F+V+ID + +KWAGSI +GVTT +P  L    T+T++ S +      W+  G+ + H      +++  + L  +   D +G+  R++G +H + NG+     A  +P  V  Y +VD+YG   + + + D
Sbjct:  523 FHPNCGQKAAITHEGRTALRPHATDDFNHGVVLSSRALRDGEVFQVRIDKMVDKWAGSIEIGVTTHNPAYLQLPSTMTNLRSGT------WMMTGNGVMHNGTTI-LDEYGHNLDRLKAGDTVGVVRREDGTLHFFVNGMTQGPAAWNVPPGV--YAVVDLYGQAAQATIVDD 686

HSP 3 Score: 76.6406 bits (187), Expect = 2.228e-16
Identity = 50/174 (28.74%), Postives = 84/174 (48.28%), Query Frame = 0

Query:    2 KFHERCGKSISFSKTRDCAERKE---GYDNGIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQEFAINKSLYGLS----GVSDIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDVDLYVIVDIYGAVTKVSCL 168
            + H R G+ +S S     A R++    +++G+V S +PL+  ++F V+ID     W+GSI +GVT  DP+ L +  + T +   S      WV  G  +    +        YG      G  D +G++    G++  + NG      A GLP  V  + +VD+YG  T+++ L
Sbjct:   43 ELHPRTGRLVSLSACGRTARRQQPGQEFNHGLVLSREPLRDGRVFTVRIDRKVNSWSGSIEIGVTALDPSVLDFPSSATGLKGGS------WVVSGCSVLRDGRSVL---EEYGQDLDQLGEGDRVGVERTVAGELRLWVNGRDCGVAATGLPPRV--WAVVDLYGKCTQITVL 205

HSP 4 Score: 76.2554 bits (186), Expect = 2.993e-16
Identity = 48/173 (27.75%), Postives = 80/173 (46.24%), Query Frame = 0

Query:    1 MKFHERCGKSISFSKTRDCAER---KEGYDNGIVFSCKPLKKSQIFEVKIDAIEEKWAGSIRLGVTTADPNDLPYFRTVTDIHSSSEHNSMFWVCCGSKLFHGSQEFAINKSLYGLS----GVSDIIGIQVRQNGQMHTYKNGVHVENVAEGLPVDVDLYVIVDIYGAVTKVS 166
            ++FH+  G +   +     A R   +  +++ IV S + L+  ++FE+ I  + ++W+GSI  GVT   P DL +  T+TDI   +      W+  G+ +         N   YG      G    IG+     G +H + NG        GLP   ++Y +VD+YG   +VS
Sbjct:  717 LRFHQLHGSNAVITNGGRTALRHNCRSEFNDAIVISNRALRDGELFEIVIQKMVDRWSGSIEAGVTAIRPEDLEFPNTMTDIDYDT------WMLSGTAIMQDGNTMRNN---YGCDLDALGTGARIGMMRTAKGDLHYFINGQDQGAACSGLPPGKEVYAVVDLYGQCVQVS 880

The following BLAST results are available for this feature:

BLAST of TCONS_00000422-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000422-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
NEUL4	4.049e-25	33.16	Neuralized-like protein 4 OS=Homo sapiens GN=NEURL...	[more]

You are here

TCONS_00000422-protein (polypeptide) - C. hemisphaerica

ZOOM

x 1

POSITION

0

ZOOM

x 1

POSITION

0