TCONS_00000263-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000263-protein
Unique Name	TCONS_00000263-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1004

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000263-protein ID=TCONS_00000263-protein|Name=TCONS_00000263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1004bp
MAPISLKKGAVDILAGELIMHILQIERKSENFKISMEYVMSNFRFNRFLD
VNSLDVSRSLTGLCSKFRVNSFDKKADYLEKKVEEFINLPLLEIDEKDNR
EVQTDAHYALLAFLMKLSNNPLNCEFKPKEEPKPVKEENTFNWTKYLLLG
EEPLEIGANIDSDLEDDLYDSDNEIWQLSEDEDSAEDDEAQHLYDEVSEI
QKQLKKFTEVNQYVEEKDWLREKVVPAYWIESEKSTFPFHVQGMKYINSN
NQMCNNWELYKNQFTKVSNDPQLLSEKILVRETVWMLLGLENLHVYKFTG
TKYDVNEDIVITHLTKETLSKFLTSFTEVGTKVVLLKRFTELCAQKYSEI
PKTIQAFGYTISKYLSNRRETLIDLEKTLMEKDNATTLLTLKDDLADDIS
KVNFIYKIYNHAVVEGHEKYFTVTERVVHFLDVFYDFVCTLDNMGDSGTE
KMMLVLPMFLEVCRPYLEDVGCWMATGQLPRDEEFMIYRTQNQVQGETRY
WHELFLIRENRSTDGKSSKLVPRFLEKLQKQILVSGKSLGLLEEFVEFTS
TVVATDSLYEEFKRSLKINIQKSNERYRHTHALDSTDHIPGDAVSEYISD
SGIDPLLRANFHIMFNNVYQRMKTNKEQIAVESGKEEIQDLAILLRDCSC
RPPMKRIIDQSLSPVVLGRYGKACVVLLELFKKEMKFLDHLAVMKNFFLM
QATGEMYEFYTDIFEKAKHGRYWRDMSYLNIVLQDALQVNYPKLMGNLTV
DYYSSKNNLSNAQLFDGLSLHYKVPWPVSIVLDQHAEDKYNEVFRFLFKV
KRAIWVLEQLRFQELVYQCSDSQDHSDSEDEGIDYNTTTSTTRRGLKQHV
LKDMILSGAHQKLKNRILVLRMKMLHVVRSFHFYLMTRIDDSIHQEFRVE
SARDLDEILEFHQKFLFSLRQRCFLHEKVARTKDALVRILNLSFELEELW
RSSVAVLNVNQLMALEKEFFRCTSFLHSFFTTLSKRGSFPHFEFLATTMK
FESR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000142	XLOC_000142	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000263	TCONS_00000263	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007259	GCP

Vocabulary: **Biological Process**
Term	Definition
GO:0000226	microtubule cytoskeleton organization
GO:0007020	microtubule nucleation

Vocabulary: **Molecular Function**
Term	Definition
GO:0043015	gamma-tubulin binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000922	spindle pole
GO:0005815	microtubule organizing center

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0007020	microtubule nucleation
cellular_component	GO:0005815	microtubule organizing center
cellular_component	GO:0000922	spindle pole
molecular_function	GO:0043015	gamma-tubulin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007259	Gamma-tubulin complex component protein	PFAM	PF04130	Spc97_Spc98	coord: 282..924 e-value: 4.1E-78 score: 263.4
None	No IPR available	GENE3D	1.20.900.10		coord: 669..980 e-value: 0.0015 score: 17.7

Blast

[Close]

BLAST of TCONS_00000263-protein vs. Swiss-Prot (Human)
Match: GCP5 (Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.170e-128
Identity = 303/1046 (28.97%), Postives = 525/1046 (50.19%), Query Frame = 0

Query:   17 ELIMHILQIERKSE-NFKISMEYVMSNFRFNRFLDVNSLDVSRSLTGLCSKFRVNSFDKKADYLEKKVEEFINLPLLEIDEKDNREVQTDAHYALLAFLMKLSNNPLNCEFKPKEEPKPVKEENTFNWTKYLLLGEEPLEIGANIDSDLEDDLYDSDNEIWQLSEDEDSAEDDEAQHLYDEVSEIQKQLKKFTEVNQYVEEKD---WLREKVVPAYWIESEKSTFPFHVQGMKYINSNNQMCNNWELYKNQFTKVSNDPQLLSEKILVRETVWMLLGLENLHVYKFTGTKYDVNEDIVITHLTKETLSKFLTSFTEVGTKVVLLKRFTE---------------LCAQKYSEIP-KTIQAFGYTISKYLSNRRETLIDLEKTLMEKDNATTLLTLKDDLADDISKVNFIYKIYNHAVVEGHEKYFTVTERVVHFLDVFYDFVCTLDNMGDSGTEKMMLVLPMFLEVCRPYLEDVGCWMATGQL-PRDEEFMIYRTQNQVQGETRYWHELFLI------RENR------------STDGKSSK--LVPRFLEKLQKQILVSGKSLGLLEEFVEFTSTVVATDSLYEEFKRSLKINIQKSNERYRHTHALDSTDHIPGDAVS--------EYISDSGI------DPLLRANFHIMF---NNVYQRMKTNKEQIAVESGKEEIQDLAILLRDCSCRPPMKRIIDQSLSPVVLGRYGKACVVLLELFKKEMKFLDHLAVMKNFFLMQATGEMYEFYTDIFEKAKHGRYWRDMSYLNIVLQDALQVNYPKLMGNLTVDYY---SSKNNLSNAQLFDGLSLHYKVPWPVSIVLDQHAEDKYNEVFRFLFKVKRAIWVLEQLRFQELVYQCSDSQDHSDSEDEGIDYNTTTSTTRRGLKQHVLKDMILSGAHQKLKNRILVLRMKMLHVVRSFHFYLMTRIDDSIHQEFR--VESARDLDEILEFHQKFLFSLRQRCFLHEKVARTKDALVRILNLSFELEELWRSSVAVLNVNQLMALEKEFFRCTSFLHSFFTTLSKRGSFPHFEFLATTM 999
            EL+  +  ++ +++ NF++++ +  SNFRF+RFLDVNS  + +++ G+  KF ++S   KA   ++  EEF+N PL  I     +E++TDAHY++L+ L+ LS++P N  +      K V++++ F+W KYL+  EE ++IG  +D+    +  + +N+   LS ++   + D          E Q Q +K      + +E D   WL   VV  YW  +  S FP  +    +++SN     +  LY +    V +D  L++E  ++RET+W+L G++ L +++    K  V  +I++THLT   L   L      G  V  L+ F +                  +K +E P +T QAF + + KY  + +E L ++EK ++  D   TL  + D LA  +S++  ++K+++  V E       V  R  H L+  Y  +   DN+G++  + + L+  +++E  RPYL+ V  W+  G L     EF+I R +N       +W+  + +       EN             S  G SS+   +  FL+ + KQI+++GKS+ LL+      ST     +   E K    + ++    R RH    DST  +  +  +        + I++S +      DPLL  NF  M+   ++ +++       +   S     Q   + LR C             L P +  +Y   C  L++  KK+ + +++L  M+NFFLM+    MY+FYT IF+K +    W+++S+LN+ LQ+A+   YP+    L++ +    ++K  L    + DGL+L YKVPWPV IV+    +  YN+VF  L ++K A + L+ L F ELV     S        EG+ +   T   + G ++  ++  I         +R+ +LR+K++H V S H Y+MTRI  S   EF+  VE A+DLD++++ H ++L ++  RC L EKV+  K+A++++LNL+    + W++ +    +  +  +E +F  C  FL +       RGSFPH E LA ++
Sbjct:   21 ELVRGVAGLQDEADPNFQLALNFAWSNFRFHRFLDVNSHKIEKTIEGIYEKFVIHSDLSKAASWKRLTEEFLNAPLPSI-----KEIKTDAHYSILSLLLCLSDSPSNSSYVETPRNKEVEKKDDFDWGKYLMEDEE-MDIGPYMDTPNWSEESEEENDQQPLSREDSGIQVDRTP------LEEQDQNRKLDPCISWKDEPDDRSWLEHHVVHQYWT-ARPSQFPHSL----HLHSNLAAVWDQHLYSSDPLYVPDDRVLVTETQVIRETLWLLSGVKKLFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVVFRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRTYQAFMWALYKYFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGVAEVPPDTRNVV-RASHLLNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNASASSGSDQGPSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNLQCAESTTCQAGARDAERKSLYTLFLESVQSRLRHGE--DSTPQVLTEQQATKENLMKMQSIAESHLELDDVHDPLLAINFARMYLEQSDFHEKFAGGDVCVDRSSESVTCQTFELTLRSC-------------LYPHIDKQYLDCCGNLMQTLKKDYRLVEYLQAMRNFFLMEGGDTMYDFYTSIFDKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSISFENVDTAKKKLP-VHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSLDVLLFGELV-----STAEKPRLKEGLIHEQDT-VAQFGPQKEPVRQQI---------HRMFLLRVKLMHFVNSLHNYIMTRILHSTGLEFQHQVEEAKDLDQLIKIHYRYLSTIHDRCLLREKVSFVKEAIMKVLNLALMFADGWQAGLGTWRMESIEKMESDFKNCHMFLVTILNKAVCRGSFPHLESLALSL 1017

The following BLAST results are available for this feature:

BLAST of TCONS_00000263-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000263-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
GCP5	1.170e-128	28.97	Gamma-tubulin complex component 5 OS=Homo sapiens ...	[more]

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TCONS_00000263-protein (polypeptide) - C. hemisphaerica

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