TCONS_00000219-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000219-protein
Unique NameTCONS_00000219-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length198

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000219-protein ID=TCONS_00000219-protein|Name=TCONS_00000219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
MSTKRSRNLRIAVVCSSNMNRSMEAHSFLSKRGFNVKSYGTGNQVKLPGP
SADRPNVYPFTTPYDHIYRELYRKDAHLYKQNGVLHMLDRNRRIKKFPQR
FQDEKEEEFDLVITAEERVYDQLVEDFQQREAQSYTPVHVINIDITDNAE
EATLGAFQICELCEKLEKLDDLDDDIAETLELFEKKIRRHLLHTVAFY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000122XLOC_000122Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000219TCONS_00000219Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006811RNA_pol_II_suA
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0004721phosphoprotein phosphatase activity
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
cellular_component GO:0005634 nucleus
molecular_function GO:0004721 phosphoprotein phosphatase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006811RNA polymerase II subunit APFAMPF04722Ssu72coord: 9..198
e-value: 1.1E-84
score: 282.7
NoneNo IPR availableGENE3D3.40.50.2300coord: 1..194
e-value: 2.4E-9
score: 37.0

Blast
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BLAST of TCONS_00000219-protein vs. Swiss-Prot (Human)
Match: SSU72 (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.373e-87
Identity = 120/193 (62.18%), Postives = 151/193 (78.24%), Query Frame = 0 
Query:    6 SRNLRIAVVCSSNMNRSMEAHSFLSKRGFNVKSYGTGNQVKLPGPSADRPNVYPFTTPYDHIYRELYRKDAHLYKQNGVLHMLDRNRRIKKFPQRFQDEKEEEFDLVITAEERVYDQLVEDFQQREAQSYTPVHVINIDITDNAEEATLGAFQICELCEKLEKLDDLDDDIAETLELFEKKIRRHLLHTVAFY 198
            S  LR+AVVCSSN NRSMEAH+ LSKRGF+V+S+GTG  VKLPGP+ D+PNVY F T YD +Y +L RKD  LY QNG+LHMLDRN+RIK  P+RFQ+ K + FDL++T EERVYDQ+VED   RE ++  PVHV+N+DI DN EEATLGAF ICELC+ ++  +D++++I E L+ FE+K  R  LHTV FY
Sbjct:    3 SSPLRVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELYTQNGILHMLDRNKRIKPRPERFQNCK-DLFDLILTCEERVYDQVVEDLNSREQETCQPVHVVNVDIQDNHEEATLGAFLICELCQCIQHTEDMENEIDELLQEFEEKSGRTFLHTVCFY 194
The following BLAST results are available for this feature:
BLAST of TCONS_00000219-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSU721.373e-8762.18RNA polymerase II subunit A C-terminal domain phos... [more]
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