TCONS_00000182-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000182-protein
Unique NameTCONS_00000182-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length637

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000182-protein ID=TCONS_00000182-protein|Name=TCONS_00000182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=637bp
MNQQGQGASSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRD
LVTRRSLGYAYVNYQQPADAERAIDTLNYDPIKGRPCRIMWSQRDPTLRR
SGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAADDKGQSKGYGFVH
YETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIF
CKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDA
EKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGV
NLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSP
DEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYQP
GAGMPQQQGYSFQPGQPSFYIPTMPQGQRAAFIAQPVSQMTRPRWQSANV
RQMQGGYPNPGGNVRGSRPRHPNSVQPRRETPYNQKFQQGGNMPNQVMRA
GGPVPNQRAQYKLNQNTRNQYPAGPAPPAVVPQQVADQPAPMMPGQQEPL
TASTLAGATPSEQKQMIGERLFPLVQEHQPKMAGKITGMLLEIDNGELLN
MLESRDLLKDKVGEAVAVLQAHQAKEAQTQAKTGEQA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000108XLOC_000108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000182TCONS_00000182Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR002004PABP_HYD
IPR003954RRM_dom_euk
IPR006515PABP_1234
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 272..292
NoneNo IPR availableGENE3D3.30.70.330coord: 283..385
e-value: 4.4E-27
score: 93.9
NoneNo IPR availableGENE3D3.30.70.330coord: 185..282
e-value: 1.5E-26
score: 92.3
NoneNo IPR availableGENE3D1.10.1900.10coord: 547..631
e-value: 9.8E-37
score: 124.5
NoneNo IPR availableGENE3D3.30.70.330coord: 1..100
e-value: 3.6E-23
score: 81.2
NoneNo IPR availableGENE3D3.30.70.330coord: 101..184
e-value: 1.6E-20
score: 73.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 454..491
NoneNo IPR availableCDDcd12381RRM4_I_PABPscoord: 299..377
e-value: 2.84546E-54
score: 179.737
NoneNo IPR availableCDDcd12380RRM3_I_PABPscoord: 196..275
e-value: 9.17918E-37
score: 131.157
NoneNo IPR availableCDDcd12378RRM1_I_PABPscoord: 17..96
e-value: 1.89663E-55
score: 182.734
NoneNo IPR availableCDDcd12379RRM2_I_PABPscoord: 102..177
e-value: 1.98724E-50
score: 168.884
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 17..90
e-value: 2.0E-21
score: 87.1
coord: 198..270
e-value: 6.5E-24
score: 95.4
coord: 301..373
e-value: 2.1E-22
score: 90.4
coord: 105..177
e-value: 3.7E-23
score: 92.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 18..87
e-value: 8.2E-19
score: 67.1
coord: 199..267
e-value: 1.6E-21
score: 75.8
coord: 106..173
e-value: 9.7E-20
score: 70.1
coord: 302..368
e-value: 1.4E-17
score: 63.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 104..176
score: 17.012
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 197..274
score: 17.745
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 16..94
score: 16.722
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 300..377
score: 18.342
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 16..180
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 197..381
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinSMARTSM00517poly_2coord: 559..622
e-value: 8.7E-36
score: 134.9
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPFAMPF00658PABPcoord: 553..619
e-value: 4.9E-27
score: 93.8
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinPROSITEPS51309PABCcoord: 547..624
score: 21.749
IPR002004Polyadenylate-binding protein/Hyperplastic disc proteinSUPERFAMILY63570PABC (PABP) domaincoord: 502..630
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 301..373
e-value: 2.1
score: 10.8
coord: 17..90
e-value: 9.0
score: 4.4
coord: 198..270
e-value: 0.11
score: 21.6
coord: 105..177
e-value: 4.5
score: 7.4
IPR006515Polyadenylate binding protein, human types 1, 2, 3, 4TIGRFAMTIGR01628TIGR01628coord: 16..620
e-value: 1.7E-227
score: 755.3

Blast
BLAST of TCONS_00000182-protein vs. Swiss-Prot (Human)
Match: PABP1 (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 726.472 bits (1874), Expect = 0.000e+0
Identity = 386/646 (59.75%), Postives = 468/646 (72.45%), Query Frame = 0
Query:    9 SSANYPIASLYVGDLSPDVTEAMLFEKFSATGPVLSIRVCRDLVTRRSLGYAYVNYQQPADAERAIDTLNYDPIKGRPCRIMWSQRDPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAADDKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQRVGPLRYQPGAGMPQQQGYSFQPGQPS-FYIPTMPQGQ-RAAFIAQPVSQMTR----PRWQSANVRQMQGGYPNP----GGNVRGSRPRHP-NSVQP-RRETPYNQKFQQGGNMPNQVMRAGGPVPNQRA-----------QYKLNQNTRNQYPAGPAPPAVVPQQVADQPAPMMPGQQEPLTASTLAGATPSEQKQMIGERLFPLVQEHQPKMAGKITGMLLEIDNGELLNMLESRDLLKDKVGEAVAVLQAHQAKEAQTQA 631
            S+ +YP+ASLYVGDL PDVTEAML+EKFS  GP+LSIRVCRD++TRRSLGYAYVN+QQPADAERA+DT+N+D IKG+P RIMWSQRDP+LR+SGVGNIFIKNLDK ID+K LYDTFSAFGNILSCK+  D+ G SKGYGFVH+ET+EAA+ AI K+NGM+LND+KVFVG F  +KER  ++G + K+F N++ KNFG +  +++L  LF +FG   S  VMTDESG S+GFGF++FE HEDA+KA DE+N KE++G +I   RAQKK ER  ELK KFEQ K +RI+RYQGVNLY+KNL+DGIDDERLR EFS FGTITSAKVM +    SKGFGFVCFSSP+EATKAVTEMNGRI+ TKPLYVALAQRKEER+A L+ Q+MQR+  +R      +P      +QP  PS +++  +PQ Q RAA+   P SQ+ +    PRW +      QG  P+P     G +R + PR P ++++P   + P     Q+  N   Q M   GP P   A           QYK     RN      A P V  Q    QPA  + G QEPLTAS LA A P EQKQM+GERLFPL+Q   P +AGKITGMLLEIDN ELL+MLES + L+ KV EAVAVLQAHQAKEA  +A
Sbjct:    4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG-RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR-----AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYY--PPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTM---GPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ----QPAVHVQG-QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKA 626          

HSP 2 Score: 169.088 bits (427), Expect = 9.621e-45
Identity = 100/298 (33.56%), Postives = 160/298 (53.69%), Query Frame = 0
Query:   95 DPTLRRSGVGNIFIKNLDKHIDHKGLYDTFSAFGNILSCKIAAD-DKGQSKGYGFVHYETKEAAQEAISKVNGMMLNDKKVFVGEFMCKKERVDQIGDQQKKFKNIFCKNFGNEFTNDKLLGLFQEFGEITSCVVMTDESGTSRGFGFIAFENHEDAEKACDELNNKEIDGNKITCCRAQKKAERSMELKSKFEQQKNERISRYQGVNLYIKNLEDGIDDERLRTEFSQFGTITSAKVMKDDKVNSKGFGFVCFSSPDEATKAVTEMNGRIIVTKPLYVALAQRKEERRAQLSTQFMQ 391
            +P+     + ++++ +L   +    LY+ FS  G ILS ++  D    +S GY +V+++    A+ A+  +N  ++  K V +       +R   +  ++    NIF KN      N  L   F  FG I SC V+ DE+G S+G+GF+ FE  E AE+A +++N   ++  K+   R + + ER  EL ++ +          +  N+YIKN  + +DDERL+  F +FG   S KVM D+   SKGFGFV F   ++A KAV EMNG+ +  K +YV  AQ+K ER+ +L  +F Q
Sbjct:    2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSL--RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK----------EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282          
The following BLAST results are available for this feature:
BLAST of TCONS_00000182-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PABP19.621e-4559.75Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
back to top