TCONS_00000139-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000139-protein
Unique NameTCONS_00000139-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000139-protein ID=TCONS_00000139-protein|Name=TCONS_00000139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MADGKKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRA
ENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPK
VKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLI
YKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQA
NNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000078XLOC_000078Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000139TCONS_00000139Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005998Ribosomal_L7_euk
IPR016082Ribosomal_L30_ferredoxin-like
IPR012988Ribosomal_L30_N
IPR018038Ribosomal_L30_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005998Ribosomal protein L7, eukaryoticTIGRFAMTIGR01310TIGR01310coord: 11..244
e-value: 7.5E-102
score: 337.8
IPR016082Ribosomal protein L30, ferredoxin-like fold domainGENE3D3.30.1390.20coord: 192..244
e-value: 1.6E-6
score: 27.9
coord: 85..191
e-value: 1.2E-45
score: 153.6
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 86..136
e-value: 2.9E-23
score: 81.4
IPR016082Ribosomal protein L30, ferredoxin-like fold domainSUPERFAMILY55129Ribosomal protein L30p/L7ecoord: 85..244
IPR012988Ribosomal protein L30, N-terminalPFAMPF08079Ribosomal_L30_Ncoord: 10..81
e-value: 2.1E-29
score: 101.5
IPR018038Ribosomal protein L30, conserved sitePROSITEPS00634RIBOSOMAL_L30coord: 104..136
NoneNo IPR availableCDDcd01657Ribosomal_L7_archeal_eukcoord: 85..244
e-value: 2.67109E-85
score: 252.448

Blast
[Close]
BLAST of TCONS_00000139-protein vs. Swiss-Prot (Human)
Match: RL7 (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.085e-117
Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 0 
Query:    5 KKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRAENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPKVKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLIYKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQANNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN 244
            K++P VPETL K+R+   +++  R   K  QK   K +R++I+ +A++Y KEYRQ  +  IRM R+A+K GNFYVPAE KLAFVIRIRGIN VSPKV+K LQLLRLRQI NG FV+LNKASINMLR+VEPYI+WGYPNLKSV +LIYKRG+GK+  +RI LT+N++I  +LGK  IIC+EDLIHEIYTVG+ FK+ANNFLWPFKLS P GGM+KKT HFVEGGD GNRED IN LI++MN
Sbjct:    9 KEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
The following BLAST results are available for this feature:
BLAST of TCONS_00000139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL72.085e-11767.0860S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
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