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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00000139 ID=TCONS_00000139|Name=TCONS_00000139|organism=Clytia hemisphaerica|type=transcript|length=1248bp GGGGactaaaagagaaaaaacaattttataaaaatcattcaCTTATTTTG AGCAATCGACAAAGTTCAGACTGGTCTCCAGGGGAGAGTTGGAGAGAGCG CGACACGAGGAGAGTGAAGCCAGGCACACCGCAACACCGCCCTCCCCCGT TTGTGGCGTTACGTTCAGTAATTGAAGTTCTGAACTATCCAGGCTAAAAT TTCATACAAATTCGACGGTACCGACTGATTTATCCTTTACAACTTTGCTG GAGAAGATGGCCGACGGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTT GAAGAGAAGAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAA AGCTCAAGCAAAAGAAGGCCAACAAAGACAAGCGTCAAGTCATCTTTACA CGAGCTGAAAACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTAT TCGCATGAAAAGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTG AAGCAAAATTAGCTTTTGTTATCCGAATTAGAGGTATCAACCAAGTCAGT CCAAAAGTCAAGAAGGCTTTACAGCTTTTACGACTTCGACAAATCAACAA TGGAGTCTTTGTCAGACTCAACAAAGCCTCGATCAATATGTTGAGATTGG TTGAGCCTTACATTTCCTGGGGATACCCTAACTTGAAGAGTGTTCGTGAT CTCATTTACAAACGTGGACATGGAAAAGTTGCTCATCAACGTATTCCATT GACTGAAAACTCTATCATTGAAAACGCCCTTGGAAAACGTAATATTATCT GTATTGAAGACTTGATCCATGAAATTTACACTGTCGGCGAAAACTTCAAA CAAGCCAACAACTTTTTATGGCCCTTCAAACTCAGCTGCCCAACCGGTGG TATGAGAAAGAAGACCATTCACTTTGTTGAAGGTGGTGATCATGGAAACC GTGAGGACTTTATCAATAACTTGATTAAACAAATGAATTAATTTCCATTG AAATACAAAACGTCGGTCCAAAAATGATTTTCTGAATTGTTGTCTTTTGC ATGAGTTTCtccaaaactgaaaatttcttttgtctttATTTTCATACAGT TTCATAGTTTTTTACCCCCTCCACATAGAATGCACcatttaaagtctgtc cagatataattggcagtggaaacaagaatgcctgtaacttttgatagtca attataattatggaatttttttttgcttgttttagagaatcaaaagcg Run BLAST on NCBI protein sequence of TCONS_00000139-protein >TCONS_00000139-protein ID=TCONS_00000139-protein|Name=TCONS_00000139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MADGKKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRA ENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPK VKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLI YKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQA NNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN Run BLAST on NCBI transcript from alignment at sc0000001:12235..15485- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00000139 ID=TCONS_00000139|Name=TCONS_00000139|organism=Clytia hemisphaerica|type=transcript|length=3251bp|location=Sequence derived from alignment at sc0000001:12235..15485- (Clytia hemisphaerica) GGGGACTAAAAGAGAAAAAACAATTTTATAAAAATCATTCACTTATTTTG
AGCAATCGACAAAGTTCAGACTGGTCTCCAGGGGAGAGTTGGAGAGAGCG
CGACACGAGGAGAGTGAAGCCAGGCACACCGCAACACCGCCCTCCCCCGT
TTGTGGCGTTACGTTCAGTAATTGAAGTTCTGAACTATCCAGGCTAAAAT
TTCATACAAATTCGACGGTACCGACTGATTTATCCTTTACAACTTTGCTG
GAGAAGATGGCCGACGGGTTAGTGATAAGCACATTGTCATCATTATTTAC
CTTGCTATATCGTTTACCACCTTGAGGAAATGGATTACTGCTACAATCGA
TCAGACTCTATCACACTATCCGTTTGGATATTTGGAAGTATTTTCGTCCA
TTGCTTCTTATGATAACTTGAATTTGGAATTCAAAGTTTTATCATTGAAA
GTCTAATAACGTTCTTTTTACGTTATAGCAAAAAACTTCCTGGTGTCCCT
GAAACTCTCTTGAAGAGAAGAAAGACCCTTGAAAAGGTCCGAGCTGCCCG
CGCTGCCTCAAAGCTCAAGCAAAAGAAGGTTTGTCAAAATTAGCTTCGTT
CACTTTTCTTGTAATTTGCAAAATGGGCAAAACCAAGTTTTTCTTCAAAC
TTCTAAGCTAATAGTATAATTTTGACTATTAGCTTAGTTGCATACAAACT
CTCGCCCTTACTGAAAACTCCCAAGGCATTAAAAGTATTTTGTTATCTAA
GGCCAAAATAATAACATGGACTGATAAGAAAGAAAATGGAAAGAAAGAAA
CAAGAAGAAAATTAATTCCCGCTTTGATGTTATTATCAAATCAAAAGGAC
CAGTCATGCCGAAATTCCTTTCCACTCGTCAGCAATCTACTTTTTATAAA
TAGAAAAACTAGATTGTAAGGAAGATACTAAAAAAAGATAGCTGTTTTCT
TAGAAGACTACATTGTATCTTTTTGAAGATAACTGTTGTGTTTACAAAAT
ATTTATTTCTCTTTTGGTACGTTATTTCCTCCTCAACTTTTAAAACAGAG
CTCTGACCTTTATAAAAAAGAAGGACAATTTAGTGAGATCCAAGGACTGA
GTTAACTGTCTCCCATATATTCTGCCCAAGTGAACCACTCCACAAATAAC
AAATGAATTTTAGCCCCTTATACAAATATCCTGTAACAGTTTTTGTCAAT
AAGTCAAAAATGTACAAATCTATCCTCATTTGAATTTTGGTAACATTTTA
TACCAGAAATGCACCAGGCTTGTATCAAAGGTTTTGTTTTGATTGAAAAG
TCTGAATGATGGTGATGTAGTAAAAACAGGTGCAACAAGGTTTTGANCGT
ACAAATCTATCCTCATTTGAATTTTGGTAACATTTTATACTAGAAATGCA
CCAGGCTTGTATCAAAGGTTTTGTTTTGATTGAAAAGTCTGAATGATGGT
GATGTAGTAAAAACAGGTGCAACAAGGTTTTGAAAAAAAAAACATTGAGT
AAAAAAGAATTCCTCAAACAAAGGGATTTCTACTGATACTCTTTTGAATG
TTTTTATGTTTATAATAAACAAAACGTTTTCGATCTTGTAATCAAAACAT
TCGATTGTTAATTTGCTCAAAATCAAGTTTGCTATTTTTTTGTTTACAGA
ATCATTAAAATGTGAGCTCACATCTCATAAAATCTTTGATTTTTCACTAT
GTTTCTCCTTTTATTCCTGTAGAAAACCTTTTAAACCTCATTATCTCTTG
TTCATATTTTCAATAATAATGCTGTGAAGATTTCATTTTTTAAATTCCCT
ACTGTTACTTAATCAGGCCAACAAAGACAAGCGTCAAGTCATCTTTACAC
GAGCTGAAAACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTATT
CGCATGAAAAGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTGA
AGCAAAATTAGCTTTTGTTATCCGAATTAGAGGGTAAGTAATTTGGATTG
AGAAATATGTCAAAACCAACATTTTAAATCCTCAGATCTTGTTGTTCCCG
ACTTTAAGGAAGGAAAAATGTTATGGTTTCTGAGTACAATGTCAAATTTC
ATGAACTGTATCCCTTTGATACTTATGCTCTCTCCTCAATTGTGTTGGTC
ATTCTGGTTTAACTGATAGTGTTACATTGAATGAACCAATGATTATAAAG
CTGTTCACATTCTGATTTGTGTGATGATAATCACTTCCATGGCTATGAGG
TTCTATTCATGTTCTATGAAATTTTAGCTGGACGAGTACTTATTTATTCC
AATTAATTTGAATTCCTCTTCTCTTCAGTATCAACCAAGTCAGTCCAAAA
GTCAAGAAGGCTTTACAGCTTTTACGACTTCGACAAATCAACAATGGAGT
CTTTGTCAGACTCAACAAAGCCTCGATCAATATGTTGAGATTGGTTGAGC
CTTACATTTCCTGGGGGTAAGTCAAATGATAACCTTTATTTAACATTGTT
CCTTGCTTACTTTAGTTTAGTTTGATTGAAATGCAAGGATGAAACAACGC
GGTATTGATATAACTCATGATAGTTGACCAATTGTCTGGCTGAGCATTTC
TCTACAGAAAATGTGTTTGAAATTATTTAGAGTTGTCTACCTTTCAATAA
TTGTTGGTCACTTTTATATTCGTAGATACCCTAACTTGAAGAGTGTTCGT
GATCTCATTTACAAACGTGGACATGGAAAAGTTGCTCATCAACGTATTCC
ATTGACTGAAAACTCTATCATTGAAAACGCCCTTGGAAAACGTAATATTA
TCTGTATTGAAGACTTGATCCATGAAATTTACACTGTCGGCGAAAACTTC
AAACAAGCCAACAACTTTTTATGGCCCTTCAAACTCAGCTGCCCAACCGG
TGGTATGAGAAAGAAGACCATTCACTTTGTTGAAGGTGGTGATCATGGAA
ACCGTGAGGACTTTATCAATAACTTGATTAAACAAATGAATTAATTTCCA
TTGAAATACAAAACGTCGGTCCAAAAATGATTTTCTGAATTGTTGTCTTT
TGCATGAGTTTCTCCAAAACTGAAAATTTCTTTTGTCTTTATTTTCATAC
AGTTTCATAGTTTTTTACCCCCTCCACATAGAATGCACCATTTAAAGTCT
GTCCAGATATAATTGGCAGTGGAAACAAGAATGCCTGTAACTTTTGATAG
TCAATTATAATTATGGAATTTTTTTTTGCTTGTTTTAGAGAATCAAAAGC
G Coding sequence (CDS) from alignment at sc0000001:12235..15485- >TCONS_00000139 ID=TCONS_00000139|Name=TCONS_00000139|organism=Clytia hemisphaerica|type=CDS|length=3675bp|location=Sequence derived from alignment at sc0000001:12235..15485- (Clytia hemisphaerica) ATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTACAAACGTGGACATG GAAAAGTTGCTCATCAACGTATTCCATTGACTGAAAACTCTATCATTGAA AACGCCCTTGGAAAACGTAATATTATCTGTATTGAAGACTTGATCCATGA AATTTACACTGTCGGCGAAAACTTCAAACAAGCCAACAACTTTTTATGGC CCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAAAGAAGACCATTCAC TTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGACTTTATCAATAACTT GATTAAACAAATGAATTAATATCAACCAAGTCAGTCCAAAAGTCAAGAAG GCTTTACAGCTTTTACGACTTCGACAAATCAACAATGGAGTCTTTGTCAG ACTCAACAAAGCCTCGATCAATATGTTGAGATTGGTTGAGCCTTACATTT CCTGGGGGCCAACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGAAA ACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTATTCGCATGAAA AGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAATT AGCTTTTGTTATCCGAATTAGAGGCAAAAAACTTCCTGGTGTCCCTGAAA CTCTCTTGAAGAGAAGAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCT GCCTCAAAGCTCAAGCAAAAGAAGATGGCCGACGGATACCCTAACTTGAA GAGTGTTCGTGATCTCATTTACAAACGTGGACATGGAAAAGTTGCTCATC AACGTATTCCATTGACTGAAAACTCTATCATTGAAAACGCCCTTGGAAAA CGTAATATTATCTGTATTGAAGACTTGATCCATGAAATTTACACTGTCGG CGAAAACTTCAAACAAGCCAACAACTTTTTATGGCCCTTCAAACTCAGCT GCCCAACCGGTGGTATGAGAAAGAAGACCATTCACTTTGTTGAAGGTGGT GATCATGGAAACCGTGAGGACTTTATCAATAACTTGATTAAACAAATGAA TTAATATCAACCAAGTCAGTCCAAAAGTCAAGAAGGCTTTACAGCTTTTA CGACTTCGACAAATCAACAATGGAGTCTTTGTCAGACTCAACAAAGCCTC GATCAATATGTTGAGATTGGTTGAGCCTTACATTTCCTGGGGGCCAACAA AGACAAGCGTCAAGTCATCTTTACACGAGCTGAAAACTATGTTAAAGAAT ATAGACAAAAGGAACAAGATGTTATTCGCATGAAAAGATTGGCCAAGAAA ACTGGTAACTTCTATGTCCCAGCTGAAGCAAAATTAGCTTTTGTTATCCG AATTAGAGGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAA GAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAG CAAAAGAAGATGGCCGACGGATACCCTAACTTGAAGAGTGTTCGTGATCT CATTTACAAACGTGGACATGGAAAAGTTGCTCATCAACGTATTCCATTGA CTGAAAACTCTATCATTGAAAACGCCCTTGGAAAACGTAATATTATCTGT ATTGAAGACTTGATCCATGAAATTTACACTGTCGGCGAAAACTTCAAACA AGCCAACAACTTTTTATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTA TGAGAAAGAAGACCATTCACTTTGTTGAAGGTGGTGATCATGGAAACCGT GAGGACTTTATCAATAACTTGATTAAACAAATGAATTAATATCAACCAAG TCAGTCCAAAAGTCAAGAAGGCTTTACAGCTTTTACGACTTCGACAAATC AACAATGGAGTCTTTGTCAGACTCAACAAAGCCTCGATCAATATGTTGAG ATTGGTTGAGCCTTACATTTCCTGGGGGCCAACAAAGACAAGCGTCAAGT CATCTTTACACGAGCTGAAAACTATGTTAAAGAATATAGACAAAAGGAAC AAGATGTTATTCGCATGAAAAGATTGGCCAAGAAAACTGGTAACTTCTAT GTCCCAGCTGAAGCAAAATTAGCTTTTGTTATCCGAATTAGAGGCAAAAA ACTTCCTGGTGTCCCTGAAACTCTCTTGAAGAGAAGAAAGACCCTTGAAA AGGTCCGAGCTGCCCGCGCTGCCTCAAAGCTCAAGCAAAAGAAGATGGCC GACGGATACCCTAACTTGAAGAGTGTTCGTGATCTCATTTACAAACGTGG ACATGGAAAAGTTGCTCATCAACGTATTCCATTGACTGAAAACTCTATCA TTGAAAACGCCCTTGGAAAACGTAATATTATCTGTATTGAAGACTTGATC CATGAAATTTACACTGTCGGCGAAAACTTCAAACAAGCCAACAACTTTTT ATGGCCCTTCAAACTCAGCTGCCCAACCGGTGGTATGAGAAAGAAGACCA TTCACTTTGTTGAAGGTGGTGATCATGGAAACCGTGAGGACTTTATCAAT AACTTGATTAAACAAATGAATTAATATCAACCAAGTCAGTCCAAAAGTCA AGAAGGCTTTACAGCTTTTACGACTTCGACAAATCAACAATGGAGTCTTT GTCAGACTCAACAAAGCCTCGATCAATATGTTGAGATTGGTTGAGCCTTA CATTTCCTGGGGGCCAACAAAGACAAGCGTCAAGTCATCTTTACACGAGC TGAAAACTATGTTAAAGAATATAGACAAAAGGAACAAGATGTTATTCGCA TGAAAAGATTGGCCAAGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCA AAATTAGCTTTTGTTATCCGAATTAGAGGCAAAAAACTTCCTGGTGTCCC TGAAACTCTCTTGAAGAGAAGAAAGACCCTTGAAAAGGTCCGAGCTGCCC GCGCTGCCTCAAAGCTCAAGCAAAAGAAGATGGCCGACGGATACCCTAAC TTGAAGAGTGTTCGTGATCTCATTTACAAACGTGGACATGGAAAAGTTGC TCATCAACGTATTCCATTGACTGAAAACTCTATCATTGAAAACGCCCTTG GAAAACGTAATATTATCTGTATTGAAGACTTGATCCATGAAATTTACACT GTCGGCGAAAACTTCAAACAAGCCAACAACTTTTTATGGCCCTTCAAACT CAGCTGCCCAACCGGTGGTATGAGAAAGAAGACCATTCACTTTGTTGAAG GTGGTGATCATGGAAACCGTGAGGACTTTATCAATAACTTGATTAAACAA ATGAATTAATATCAACCAAGTCAGTCCAAAAGTCAAGAAGGCTTTACAGC TTTTACGACTTCGACAAATCAACAATGGAGTCTTTGTCAGACTCAACAAA GCCTCGATCAATATGTTGAGATTGGTTGAGCCTTACATTTCCTGGGGGCC AACAAAGACAAGCGTCAAGTCATCTTTACACGAGCTGAAAACTATGTTAA AGAATATAGACAAAAGGAACAAGATGTTATTCGCATGAAAAGATTGGCCA AGAAAACTGGTAACTTCTATGTCCCAGCTGAAGCAAAATTAGCTTTTGTT ATCCGAATTAGAGGCAAAAAACTTCCTGGTGTCCCTGAAACTCTCTTGAA GAGAAGAAAGACCCTTGAAAAGGTCCGAGCTGCCCGCGCTGCCTCAAAGC TCAAGCAAAAGAAGATGGCCGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00000139-exon-sc0000001-1575043694:15219..15485 | TCONS_00000139-exon-sc0000001-1575043694:15219..15485 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1575043694:14908..15007 | TCONS_00000139-exon-sc0000001-1575043694:14908..15007 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1575043694:13503..13669 | TCONS_00000139-exon-sc0000001-1575043694:13503..13669 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1575043694:13020..13157 | TCONS_00000139-exon-sc0000001-1575043694:13020..13157 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1575043694:12235..12810 | TCONS_00000139-exon-sc0000001-1575043694:12235..12810 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1510915933:15219..15485 | TCONS_00000139-exon-sc0000001-1510915933:15219..15485 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1510915933:14908..15007 | TCONS_00000139-exon-sc0000001-1510915933:14908..15007 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1510915933:13503..13669 | TCONS_00000139-exon-sc0000001-1510915933:13503..13669 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1510915933:13020..13157 | TCONS_00000139-exon-sc0000001-1510915933:13020..13157 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1510915933:12235..12810 | TCONS_00000139-exon-sc0000001-1510915933:12235..12810 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1491911889:15219..15485 | TCONS_00000139-exon-sc0000001-1491911889:15219..15485 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1491911889:14908..15007 | TCONS_00000139-exon-sc0000001-1491911889:14908..15007 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1491911889:13503..13669 | TCONS_00000139-exon-sc0000001-1491911889:13503..13669 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1491911889:13020..13157 | TCONS_00000139-exon-sc0000001-1491911889:13020..13157 | Clytia hemisphaerica | exon |
TCONS_00000139-exon-sc0000001-1491911889:12235..12810 | TCONS_00000139-exon-sc0000001-1491911889:12235..12810 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000001 | supercontig | sc0000001:12235..15485 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00000139 vs. Swiss-Prot (Human)
Match: RL7 (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 4.336e-113 Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 2
Query: 269 KKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRAENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPKVKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLIYKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQANNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN 988
K++P VPETL K+R+ +++ R K QK K +R++I+ +A++Y KEYRQ + IRM R+A+K GNFYVPAE KLAFVIRIRGIN VSPKV+K LQLLRLRQI NG FV+LNKASINMLR+VEPYI+WGYPNLKSV +LIYKRG+GK+ +RI LT+N++I +LGK IIC+EDLIHEIYTVG+ FK+ANNFLWPFKLS P GGM+KKT HFVEGGD GNRED IN LI++MN
Sbjct: 9 KEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
The following BLAST results are available for this feature:
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