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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000139-protein ID=TCONS_00000139-protein|Name=TCONS_00000139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MADGKKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRA
ENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPK
VKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLI
YKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQA
NNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR005998 | Ribosomal protein L7, eukaryotic | TIGRFAM | TIGR01310 | TIGR01310 | coord: 11..244
e-value: 7.5E-102
score: 337.8 |
| IPR016082 | Ribosomal protein L30, ferredoxin-like fold domain | GENE3D | 3.30.1390.20 | | coord: 192..244
e-value: 1.6E-6
score: 27.9
coord: 85..191
e-value: 1.2E-45
score: 153.6 |
| IPR016082 | Ribosomal protein L30, ferredoxin-like fold domain | PFAM | PF00327 | Ribosomal_L30 | coord: 86..136
e-value: 2.9E-23
score: 81.4 |
| IPR016082 | Ribosomal protein L30, ferredoxin-like fold domain | SUPERFAMILY | 55129 | Ribosomal protein L30p/L7e | coord: 85..244 |
| IPR012988 | Ribosomal protein L30, N-terminal | PFAM | PF08079 | Ribosomal_L30_N | coord: 10..81
e-value: 2.1E-29
score: 101.5 |
| IPR018038 | Ribosomal protein L30, conserved site | PROSITE | PS00634 | RIBOSOMAL_L30 | coord: 104..136 |
| None | No IPR available | CDD | cd01657 | Ribosomal_L7_archeal_euk | coord: 85..244
e-value: 2.67109E-85
score: 252.448 |
Blast
BLAST of TCONS_00000139-protein vs. Swiss-Prot (Human)
Match: RL7 (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1) HSP 1 Score: 335.109 bits (858), Expect = 2.085e-117 Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 0 Query: 5 KKLPGVPETLLKRRKTLEKVRAARAASKLKQKKANKDKRQVIFTRAENYVKEYRQKEQDVIRMKRLAKKTGNFYVPAEAKLAFVIRIRGINQVSPKVKKALQLLRLRQINNGVFVRLNKASINMLRLVEPYISWGYPNLKSVRDLIYKRGHGKVAHQRIPLTENSIIENALGKRNIICIEDLIHEIYTVGENFKQANNFLWPFKLSCPTGGMRKKTIHFVEGGDHGNREDFINNLIKQMN 244
K++P VPETL K+R+ +++ R K QK K +R++I+ +A++Y KEYRQ + IRM R+A+K GNFYVPAE KLAFVIRIRGIN VSPKV+K LQLLRLRQI NG FV+LNKASINMLR+VEPYI+WGYPNLKSV +LIYKRG+GK+ +RI LT+N++I +LGK IIC+EDLIHEIYTVG+ FK+ANNFLWPFKLS P GGM+KKT HFVEGGD GNRED IN LI++MN
Sbjct: 9 KEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248
The following BLAST results are available for this feature:
BLAST of TCONS_00000139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| RL7 | 2.085e-117 | 67.08 | 60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... | [more] |
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