TCONS_00000060-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000060-protein
Unique Name	TCONS_00000060-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	703

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000060-protein ID=TCONS_00000060-protein|Name=TCONS_00000060-protein|organism=Clytia hemisphaerica|type=polypeptide|length=703bp
MLTKLNKLNYLNRNLSILSLSPKQQPIKMSTTSSQFTLSIVDYLVFAIVL
VASSVIGIYFARKGKPASSPSSKEKNERLNILSKQGTKDTNENGDNQKET
DEYLVGGRNMHWFPLSISFMATYISASSLLGIPAEIYTYGFQYIVSCGAL
FVSTFFTWYIFIPIFYRLKIVCANEYLELRFSRGVRNIGCIIMSIYMLIS
LSIGLYGPALAFEAVGGVPLYVSITVTGLVCIFYTTIGGIKAVVWTDCFQ
AFVMIAGLLVVIIIGVEEVGSIGKIFEKAQQGERIHILNFDPDPRIRNTF
WSLIFGVGFTILPAWAVGQQSVQRFQAAKSMKEARLALLWNFPSMLFISL
LAMLAGLVIYAVNADCDVGVYGLHLVDRNDQVLPYFIMQKLGHLTGIPGL
FMAVLFSSALSTVSSSINGLSALLLEDFIRKIRPNITDTNAKKMSMLLAF
SSGLCGIGLSFLISNLGNLVSQISFTVIGTLGSPYLGMFTLGMMNPWSNT
KGAYTGFLFGLGTTLWLAIGAIFNPPNAYPKVVHVDGCAGFNSTNVTNTI
LHGSGIIRPTDQYVPSSSSLASFYSISYLWYGLIGLTVTILFGSVASAIF
KRISPNNEVYVDEKLLFIYKETEDKKITKRDEEREDPVEENHFTDDTQKW
TNTKLSIPRFQRCRLTFESFEVLSTVVEALVVAMYLFPRLVSSKSIASLN
FLV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000030	XLOC_000030	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000060	TCONS_00000060	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 103..510 e-value: 9.3E-55 score: 186.0
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 103..510 e-value: 1.9E-90 score: 301.9
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 39..524 score: 54.645
None	No IPR available	CDD	cd11492	SLC5sbd_NIS-SMVT	coord: 41..599 e-value: 0.0 score: 536.298

Blast

[Close]

BLAST of TCONS_00000060-protein vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2)

HSP 1 Score: 338.191 bits (866), Expect = 4.752e-107
Identity = 203/568 (35.74%), Postives = 307/568 (54.05%), Query Frame = 0

Query:   38 LSIVDYLVFAIVLVASSVIGIYFARKGKPASSPSSKEKNERLNILSKQGTKDTNENGDNQKETDEYLVGGRNMHWFPLSISFMATYISASSLLGIPAEIYTYGFQYIVSCGALFVSTFFTWYIFIPIFYRLKIVCANEYLELRFSRGVRNIGCIIMSIYMLISLSIGLYGPALAFEAVGGVPLYVSITVTGLVCIFYTTIGGIKAVVWTDCFQAFVMIAGLLVVIIIGVEEVGSIGKIFEKAQQGERIHILNFDPDPRIRNTFWSLIFGVGFTILPAWAVGQQSVQRFQAAKSMKEARLALLWNFPSMLFISLLAMLAGLVIYAVNADCDVGVYGLHLVDRNDQVLPYFIMQKLGHLTGIPGLFMAVLFSSALSTVSSSINGLSALLLEDFIRKIRPNITDTNAKKMSMLLAFSSGLCGIGLSFLISNLGNLVSQISFTVIGTLGSPYLGMFTLGMMNPWSNTKGAYTGFLFGLGTTLWLAIGAIFNPPNA---YPKVVHVDGCAGFNSTNVTNTILHGSGIIRPTDQYVPSSSSLASFYSISYLWYGLIGLTVTILFGSVASAIFKR 602
             ++ DY+VFA +   SS IG++FA K             ER                  +  + E+LVGGR M + P+ +S  A+++SA ++LG P+E+Y +G  ++V   A       T  +F+P+FYR  I    EYL+LRF++ VR    +I  +  ++   + +Y PALA   V G  L+ S+  TG+VC FY T+GG+KAVVWTD FQ  VMI G L V+I G    G    + E++  G R+HI +FD DP  R+TFW++  G  FT L  + V Q ++QR  + K+ K A+LAL +N   +  I + A+ +GL++Y+   DCD    G  ++   DQ++PYF+M+    + G+PGLF+A  FS  LSTV+SSIN L+ +  EDF++   P+++D  +  +S  L    G+    ++   S +G +V Q S ++ G  G P LG+F+LG++ P+ N KGA  G L G+  + W+AIGA   P  A   +P  +  D C   N T     +L     I  T            +YSISYL+Y  +G    I+ G + S I  R
Sbjct:    6 FAVWDYVVFAALFFISSGIGVFFAIK-------------ER-----------------KKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSG--IISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGGVV-QASLSIHGMCGGPMLGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQCIKSNVTATGPPVLSSRPGIADT------------WYSISYLYYSAVGCLGCIVAGVIISLITGR 528

The following BLAST results are available for this feature:

BLAST of TCONS_00000060-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000060-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5AC	4.752e-107	35.74	Sodium-coupled monocarboxylate transporter 2 OS=Ho...	[more]

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TCONS_00000060-protein (polypeptide) - C. hemisphaerica