TCONS_00000044-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000044-protein
Unique Name	TCONS_00000044-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	751

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000044-protein ID=TCONS_00000044-protein|Name=TCONS_00000044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp
RKNLRLKKRYNFHMMHSLWIIIAASISMCSASECSLTDFELYQQTCMNNT
LYSTFNETKMLEVIENCFPWISHNFPQCWQAVHSNITTSKCQQTCQYFQN
HCPMLALFDSTKCFSRCVVGAENRQQKYENLLSLNCSQNTVAKTCAGNFV
SSSHSSEWAIQWNYQNQKQDNEIVNTTSGCALSCDNQIQVFRSGQLQVDG
PIICFSLLGIIASSFTVLSFLIDWKSQNRYPALILFITSICFMMCFLGWI
IQFFGVGRKISCDPTNLRRNKEPRHGDSFWCILSFILIYFSGLSTSCWFV
ILNYSWYISFRTMGSIKTLIQSKIKYFHFFAWGISGSFTLMALLLQAVSA
HPITNICFIHLSHNQQHLHDGLVAFPFTVCLVVGEFLLLKCVIQLKKLRN
DCSIFLVPKAVKNLTKTFYRMIIYGLGVLVAFTLLVFIMYYEFNMREEWE
KKHSKYIRCRLETVSLPTSLSKECIPPDKSRLLCLHCYILLLLLMSLLTS
SWTWTFGTLKIWKKAWKRHLETDKAKERLQFQRAWYRRINSKKIQPFLPP
INPQNPLEENKIKFMQPDKRLSLPDNLFVSTHQGDKKNRRHSDDIRSVVE
LFSIRRNTMCSLNSVISNEVSLKPVHSIQSFGHLSIAHNIPSNRGAPTNL
TVIQVYQNPTNTDELQRQFLNKPQTTNLTSDEIRHIRDRLYTPLTTAHKD
SIIADCLPYNRTDLEPDLISSAVELRQSVRNHEFYNSIELIESLSIHSTK
I

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000028	XLOC_000028	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000044	TCONS_00000044	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000539	Frizzled
IPR017981	GPCR_2-like

Vocabulary: **Biological Process**
Term	Definition
GO:0007166	cell surface receptor signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004888	transmembrane signaling receptor activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000539	Frizzled protein	PRINTS	PR00489	FRIZZLED	coord: 327..350 score: 32.33 coord: 230..252 score: 26.43 coord: 201..223 score: 36.17 coord: 374..396 score: 29.57 coord: 484..504 score: 16.57 coord: 283..307 score: 37.44
IPR000539	Frizzled protein	SMART	SM01330	Frizzled_2	coord: 189..522 e-value: 6.5E-36 score: 135.3
IPR000539	Frizzled protein	PFAM	PF01534	Frizzled	coord: 202..518 e-value: 3.6E-58 score: 197.1
None	No IPR available	GENE3D	1.20.1070.10		coord: 198..543 e-value: 1.4E-8 score: 33.5
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 208..400 score: 18.753

Blast

[Close]

BLAST of TCONS_00000044-protein vs. Swiss-Prot (Human)
Match: SMO (Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.031e-52
Identity = 118/464 (25.43%), Postives = 216/464 (46.55%), Query Frame = 0

Query:   73 HNFPQCWQAVHSNITTSKCQQTCQYFQNHCPMLALFDSTKCFSRCVVGAENRQQKYENLLSLNCSQNTVAKTCAGNFVSSSHSSEWAIQWNYQNQKQDNEIVNTTSGCALSCDNQIQVFRSGQLQ-VDGPIICFSLLGIIASSFTVLSFLIDWKSQNRYPALILFITSICFMMCFLGWIIQFF-GVGRKISCDPTNLRRNKEPRHGDSFWCILSFILIYFSGLSTSCWFVILNYSWYISFRTMGSIKTLIQSKIKYFHFFAWGISGSFTLMALLLQAVSAHPITNICFIHLSHNQQHLHDGLVAFPFTVCLVVGEFLLLKCVIQLKKLRNDCSIFLVPKAVKNLTKTFYRMIIYGLGVLVAFTLLVF-IMYYEFNMREEWEKKHSKYIRCRLE-TVSLPTSLS-KECIPPDKSRLLCLHCYILLLLLMSLLTSSWTWTFGTLKIWKKAWKR-HLETDKAKERLQ 530
             N P+CW AV   +  +     C+  +   P   L  +T+    C +    R++ + + L   C+ +   + C     +   +S    +                 GC + C N +  F   + Q +   I  F  +  + + FT+ +F+ DW++ NRYPA+ILF  + CF +  +GW+ QF  G  R+I C      R  EP   ++  C++ F+++Y++ ++   WFV+L Y+W+ SF+ +G+    +  K  YFH   W +    T+  L +  V    ++ ICF+   +       G V  P  + L+VG + L++ V+ L  ++++    L  KA   + +T  R+ I+G  +   F L+ F   +Y+F  + EWE+    Y+ C+   T+ LPT     +C   ++  LL     +  +    +  S+W WT  TL IW++ W R   ++D   +R++
Sbjct:  113 RNAPRCW-AVIQPLLCAVYMPKCENDRVELPSRTLCQATR--GPCAI--VERERGWPDFL--RCTPDRFPEGCTNEVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPL--FTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFV--GYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGF-LAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANVTIGLPTKQPIPDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGQSDDEPKRIK 564

The following BLAST results are available for this feature:

BLAST of TCONS_00000044-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000044-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMO	3.031e-52	25.43	Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=...	[more]

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TCONS_00000044-protein (polypeptide) - C. hemisphaerica