Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00000044-protein ID=TCONS_00000044-protein|Name=TCONS_00000044-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0007166 cell surface receptor signaling pathway
Vocabulary: Cellular Component
Term Definition
GO:0016020 membrane GO:0016021 integral component of membrane
Vocabulary: Molecular Function
Term Definition
GO:0004888 transmembrane signaling receptor activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0007166 cell surface receptor signaling pathway
cellular_component
GO:0016021 integral component of membrane
cellular_component
GO:0016020 membrane
molecular_function
GO:0004888 transmembrane signaling receptor activity
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
100 200 300 400 500 600 700 Score = 36.17 Score = 26.43 Score = 37.44 Score = 32.33 Score = 29.57 Score = 16.57 Expect = 6.5E-36 / Score = 135.3 Expect = 3.6E-58 / Score = 197.1 Expect = 1.4E-8 / Score = 33.5 Score = 18.753 Sequence PR00489 SM01330 PF01534 G3DSA:1.20.1070.10 PS50261
IPR Term IPR Description Source Source Term Source Description Alignment
IPR000539 Frizzled protein PRINTS PR00489 FRIZZLED coord: 327..350 IPR000539 Frizzled protein SMART SM01330 Frizzled_2 coord: 189..522 IPR000539 Frizzled protein PFAM PF01534 Frizzled coord: 202..518 None No IPR available GENE3D 1.20.1070.10 coord: 198..543 IPR017981 GPCR, family 2-like PROSITE PS50261 G_PROTEIN_RECEP_F2_4 coord: 208..400
Blast
BLAST of TCONS_00000044-protein vs. Swiss-Prot (Human)
Match:
SMO (Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=1)
HSP 1 Score: 194.512 bits (493), Expect = 3.031e-52
Identity = 118/464 (25.43%), Postives = 216/464 (46.55%), Query Frame = 0
Query: 73 HNFPQCWQAVHSNITTSKCQQTCQYFQNHCPMLALFDSTKCFSRCVVGAENRQQKYENLLSLNCSQNTVAKTCAGNFVSSSHSSEWAIQWNYQNQKQDNEIVNTTSGCALSCDNQIQVFRSGQLQ-VDGPIICFSLLGIIASSFTVLSFLIDWKSQNRYPALILFITSICFMMCFLGWIIQFF-GVGRKISCDPTNLRRNKEPRHGDSFWCILSFILIYFSGLSTSCWFVILNYSWYISFRTMGSIKTLIQSKIKYFHFFAWGISGSFTLMALLLQAVSAHPITNICFIHLSHNQQHLHDGLVAFPFTVCLVVGEFLLLKCVIQLKKLRNDCSIFLVPKAVKNLTKTFYRMIIYGLGVLVAFTLLVF-IMYYEFNMREEWEKKHSKYIRCRLE-TVSLPTSLS-KECIPPDKSRLLCLHCYILLLLLMSLLTSSWTWTFGTLKIWKKAWKR-HLETDKAKERLQ 530
N P+CW AV + + C+ + P L +T+ C + R++ + + L C+ + + C + +S + GC + C N + F + Q + I F + + + FT+ +F+ DW++ NRYPA+ILF + CF + +GW+ QF G R+I C R EP ++ C++ F+++Y++ ++ WFV+L Y+W+ SF+ +G+ + K YFH W + T+ L + V ++ ICF+ + G V P + L+VG + L++ V+ L ++++ L KA + +T R+ I+G + F L+ F +Y+F + EWE+ Y+ C+ T+ LPT +C ++ LL + + + S+W WT TL IW++ W R ++D +R++
Sbjct: 113 RNAPRCW-AVIQPLLCAVYMPKCENDRVELPSRTLCQATR--GPCAI--VERERGWPDFL--RCTPDRFPEGCTNEVQNIKFNSSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPL--FTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFV--GYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGF-LAFGFVLITFSCHFYDFFNQAEWERSFRDYVLCQANVTIGLPTKQPIPDCEIKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGQSDDEPKRIK 564
The following BLAST results are available for this feature:
BLAST of TCONS_00000044-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
R K N L R L K K R Y N F H M M H S L W I I I A A S I S M C S A S E C S L T D F E L Y Q Q T C M N N T L Y S T F N E T K M L E V I E N C F P W I S H N F P Q C W Q A V H S N I T T S K C Q Q T C Q Y F Q N H C P M L A L F D S T K C F S R C V V G A E N R Q Q K Y E N L L S L N C S Q N T V A K T C A G N F V S S S H S S E W A I Q W N Y Q N Q K Q D N E I V N T T S G C A L S C D N Q I Q V F R S G Q L Q V D G P I I C F S L L G I I A S S F T V L S F L I D W K S Q N R Y P A L I L F I T S I C F M M C F L G W I I Q F F G V G R K I S C D P T N L R R N K E P R H G D S F W C I L S F I L I Y F S G L S T S C W F V I L N Y S W Y I S F R T M G S I K T L I Q S K I K Y F H F F A W G I S G S F T L M A L L L Q A V S A H P I T N I C F I H L S H N Q Q H L H D G L V A F P F T V C L V V G E F L L L K C V I Q L K K L R N D C S I F L V P K A V K N L T K T F Y R M I I Y G L G V L V A F T L L V F I M Y Y E F N M R E E W E K K H S K Y I R C R L E T V S L P T S L S K E C I P P D K S R L L C L H C Y I L L L L L M S L L T S S W T W T F G T L K I W K K A W K R H L E T D K A K E R L Q F Q R A W Y R R I N S K K I Q P F L P P I N P Q N P L E E N K I K F M Q P D K R L S L P D N L F V S T H Q G D K K N R R H S D D I R S V V E L F S I R R N T M C S L N S V I S N E V S L K P V H S I Q S F G H L S I A H N I P S N R G A P T N L T V I Q V Y Q N P T N T D E L Q R Q F L N K P Q T T N L T S D E I R H I R D R L Y T P L T T A H K D S I I A D C L P Y N R T D L E P D L I S S A V E L R Q S V R N H E F Y N S I E L I E S L S I H S T K I 100 200 300 400 500 600 700 Expect = 3.03e-52 / Id = 25.43 Sequence SMO
Match Name E-value Identity Description
SMO 3.031e-52 25.43 Smoothened homolog OS=Homo sapiens GN=SMO PE=1 SV=... [more]
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