XLOC_045636 (gene) - C. hemisphaerica

Overview
NameXLOC_045636
Unique NameXLOC_045636
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_94:139957..150033+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045636 ID=XLOC_045636|Name=XLOC_045636|organism=Clytia hemisphaerica|type=gene|length=10077bp|location=Sequence derived from alignment at scaffold_94:139957..150033+ (Clytia hemisphaerica)
GTTCGATGTCCATAAAAAGATGGATTATGGAGGTATTCCCTGCATTCAAC
TTTTTGGAGATTGAACCTTCATCTTATCAATCATGCTCCGACTTATCTTT
AGTCTAACACTTCTAATCATTGCAGTTCGTaagtttattttatattcaCA
ATTAACCTAAAGTCtatctcaatataatctgcagtggagacaaaaaggct
gtaactttagAGATGGTATTCAAATTAGATAAGATAGCGGGTTTGTTTTt
gctcattgaaaagataatcgaTGAATAAAGCAGaagttttatcaaaattg
aaaaaagaagatgaaaactGAAGAGGGGGGGGCCGAACGGGGTTtgtgat
ttccgaaataccgaataattttgccaaaatttcccaaattccgtaaaaaa
attcttgcaattccgataccaatttttttgggtatttttcctcgttttga
caaattttttatcaaatttgatttttcatgtatgaattccggaAAAGgaa
gataaaaactttataacaaaaaaaagttttatagcaaaaattcatggatt
tccgataccgaaacaatttcagaattccgaaataccgaaggaattttgcc
cgatttccgaaattccgaagaaaaaaggtaCGCCCCACCTTATTTGGTCA
GAATCCTTTGGAAGCATTATATTGACTGCATTGATNAGGTACGATTTCCG
CACGTTTctgcaattccgaaataccgtacgccccctaAAGAAGGCAAAAG
TAAACTAGGGTATAATAAGGTACCGCTTAGGGAAAGAAAGTTCTTCCAAG
GTGAACTGATGTAGAAGAGAAATTTCGAAAACAAttctttttatcattat
taacatttttttttttctaaagacgCTTGCTCTGACAAAAACACAAAGTG
TCCAAAATGGAAGGACGACCCAAGAGATTTGTGCAATACACATGaatacg
tcatcaaaaattgcaaGAAGTCTTGCGGCAGGTGCGAAGGtaagttttaa
aattcattaCAGGACTTTAATCGGAATAATTTTCAATATCGTGAGCCAAA
AAAAGAACCGCAAAATTTTGTGGATTCATTTTTACGGATcagcattttga
aaaattttaattgcattttaattgcattttaattgcatttttaTTGCTGC
TCAATCGAAAACTCCTAAaatctattcacgataagtgtgcactcattttt
cttttacctataacttttgaaggaattctttaatctttatgaatttggta
tcattggaaagttattattagtgagtggaacgatttgaaataaaaaatct
tttaaataattctaaaaatgaagatgaaaatgagaagaaaaaaatgaaga
tcttgtagaaaagtgcaataactatcattttcacagaagtgaatccttaa
tcatcgaacgtcatcactgtgaaaaagattctcaaaaataatcattcagt
caaaagatatcaaacaaaggttgcatcaaggatttattatacactggata
tacaagtaacagatttttgccgatttctcgtgtactagctatgtccgcag
taatgatattattgttcactcttcttccctcattaaatgatttttcgaag
catttttattgcatttcttatcgaaaatcactcatccaactcccaaaaga
gacttaaaactttcctgtgagagtcagattcttccacttaattgctaatt
acaagtcgttatgacgtttcaagctgtttAAAAGATGCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NtaaaagatgcaaaagacgtgttgtgtataagaaattttatGTTGACACC
GGGAagtttcaaacttcaacctcaaaaaaaccaccttgccaccacgtgcc
tcccaaggattttcataccacagtggagccaagacactcaagtcttatgt
atatTAATTTCAgttcttctggggacagtcttggaaagatatttccaatt
gaaaatttcgtgtcattataagcattttgtctgaatttctggtctaatga
tgtttttctcacattagattttaCAGATGTATCCTGCTTGGTATGCTAGC
cctactttcaaacttttttatgcaaatgtacaaaaagaaagagctagaga
acttttttaaaataagactgataaacatttttttaaatcagacatctccg
agccgccatgacagttgtcctttgcggacaaagctagaacatcaattgtt
ttctgaaacaatgaaaatacaatgatcgctctccaccGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNttcaaaatggtagcctagCTGAAGAAAACATTAAAGCTT
AGGCCTTATGCATGCGTGCGCTTAGTGAACTAGTGTGAACAAGGTGTAGT
GCTTGGTTACAAAAATGGTGTTTAgcaaaactaaaaatcaaatgGTGCAG
TTTGTTGGCTAAACCCTCGGTTTAGCGAACgaagaaaacacagaaaaaag
acTGTTGGCTTTGATCGTCTGTTTAGGTAAACTTTTAGATGAATCAATGC
GTTCGCTAAACcctctgtttcacttttttgggtttttggctaAATGGTAT
GCACCCAAAgatataagctgattgacgtctaaaaatgctgttttctgctg
ttttctgctgtttttggggtcaatcacttattaactttgtatcgtaactt
tatattgaaaataaatatttttagtgaaattttttcacagtgatgacctc
ctaagatcacagaatctctccagtgaaaatgaaagttattatccatatag
cggtcattaagtaagccattaaagattcgaacggcgggcggtattgaaag
gttctatgactcaaatagtcatacccgcgctgaggaaACAAGGGTGTCGt
ccttcagagggctgaaatatcattaaccgccctggttatagggcgataac
gtcatttgcggcccgctcggaactttattgaagtcgttgcattgaagcga
tgagactaaaccgacgtcagaaaataacactttttggtcatttgcggccc
gctcggaactttattgaagtcgttgcattgaagcgatgagactaaaccga
cgtcagaaaataacactttttggtcatttgcggcccgctcgcaagggtac
tcaaaacttgttgaagtcattgcattgaagcgaaaagacttggctgacgc
tagaaaaaaacgtgtgtGTGGATTTaacagaaaataacaacaacgacctc
aaactgaacgctattgttatattatagcacttttctacaagatcttcatt
tttttcttcttcattttcatctttatttttgtaatttttttaatttgttg
aaGCAATGCTTTCATCCATCAAAAGAGTGCTTAACCAACCGAAGTTAGAA
GCGTTATATCGTAGTTAAAGTATATaatgaaaatcattttttcaatactg
gcagtttcatttttttacaaacaatcctcagttgaaaataaattttttaa
aaactagagttccgttgctcttacaaaaaaataacactGCAGGGTCTTCG
TAagaaattgacgtcattttagtCCTTGGTGTCGTGAACTTTTAAAGTGA
ACTTGTTCACGTGACGGCATTTTGAAATCAGTTCATTCCTGGAAGAATGA
CCCCCAAGAATGTACTCCCCCCGTACAACCAGAACGTTGAAACGAAAGTT
GCACGAAGGTTTCTGCAACTCATAGATAAGTACTTTCCAAAACACCACAT
ACTCAACAAAATATTCAACCGCAACACTGTCAAAGTCAGCTATAGTTGca
ccaaaaacatgaaaaatatcataCAGAGTCACAATAAAAACATCCTGGAA
GACGAAGCAAACGAGAACGTAGACAACCGAATGTGTAACTGCAGGGTAAA
AGCCAACTGTCCCCTGAACAGATCGTGTTTAGTTGAGCGATCAGTATACC
AAGCCACATGCGAGGAAGAACCAGATTACGACGAGAAGTTTTACATCGGA
CTTGCCGAACCTGCTTTCAAAAAACGTTTTGCAAACCACCGCTACGAAAA
AGAGACGGAATTGTCAAAAGAAGTTTGGAGGTTAAAACGAAAAAACCTAT
CGCCAAAAATCGCATGGAAAACCATCCGNTTTTTTTGTTCGAAAACTTCC
TTACAACATTTTCCTACACTGTTTCATTTAATTAAAGCTACCTGCGCTGA
CAAAAACGTAAAGTGTCCTAAATGGAAGGACGACCAAAGAGATTTGTGTA
ATACACATGAATACGTCATCCAAAATTGCAAGAAGTCTTGTGGCAGATGT
GGAGGCTCAGGTATGTTGTTAAAGTTAACAAAGGAGGAGGGGAGTAACTA
GATAACAAATACTTTAAAGCATTTTTACAAGATGTGATAATTTGAAATCC
TGTTGTTTTTGACATATGTGTTCtaaatataaattaaatttcttgGCTTT
CAAATTAAGGATCTTGCGAAATTTNGAAATGCCGTCACGTGAACAAGTTC
Actttaatagttcacgacacaaggactaaaatgacgtcaatttttgacga
agaccctgcaatgttatttttttgtgagAGCAACGGAACTctagttttta
aaaaatataattttttaaagatttttttatttcaaattgtcccactcact
aatatcttaccaatgataccaaatttataaagattaaagaattccttcaa
aaNGTTTTgcacttctttttttctttgacattttttgacttATTTTTCAA
CTCTAACATTATTCTAAACCGCTGAAAAGATAATCAAAaaagcattttaa
ttttttaggcAAATAACTTCAAAGATTGGACTTTTTATCCTCTAATTCCA
GGAACCTTATTTTTGCTAAACTGGTACTCTTAAGCCTCTGGATATCAGCT
ATAAAGCCTTTAGAAGCAATTTCATCTGAGTGAAAgacttttttgttgtt
gctatGTTTGCATCTACGGGCCACATTCTAAATAAGAACGTAACTTCCGA
TGCAATAAGTTTATGTTATCTAGCTGAAATCTAGCTGAAATCAGGAggct
ttacacgtttttttttttttaagaaacacacttttaagaaacatgaggct
cagaatgcctaaaaactaagaaacatctaagaaacatgctgaggctgaga
atgagaaaatgacatttttaaaacggtttttttagaaccttccaatcttt
gcatgaaaagtaggctgattatgtcaaaaaagtttagaaacatgtaaaaa
acatttaaggctcaaaaggccgatttcttaagaaacattgagactgcttg
gtaaaactagtttcttaaaaaaaacgtgtataatacGTCTGTttagcaaa
aattagttcctagCGTCGAAGGATAAAAACCTATTTTTTTTCGTCTTCAA
CTTTCATTTtcgaacatttttgaaatctttttgacaGTCTATGCTTCTTA
AACTGCTTTTTCATATAACTTAAGCTACCTGCGCTGACAAAAACGCAAAA
TGTCCTAAATGGAAGGACGACCGAAGAGATTTGTGTAATACACATGAATA
CGTCATCCAAAATTGCAAGAAGTCTTGTGGCAGATGTGGAGGCTCTGGTG
GTGGTTCAGGCGGAGGCtctggtggtggtggtggttcAGGCGGATCCACC
GGTGGATCGGAAGGAAAATGTGGCGTTTCACGGGCGGCCCAAAGTCGAAT
TGTTGGAGGGACCACAGCCAGAGCTGGTGCTTGGCCGTGGCAAGTTTCTT
TGCAAATTTATAACCAACACTTTTGCGGTGGAAGTATCTTGACATCAACC
TGGGTAAGTATCTTATCCGGACAAGTATCTCAGATATGATTCTAANGCAC
TTTTGCGGCGGAAGTATTTTGACATCAACCTGGGTAAGTATCTTATCCGG
ACAAGTATTTTGAAATATCTCAGATATGATTCTAAATATAAGTTTTTTAG
TTTCTAGccaaattttaaatctttttgttcctatgaaaattttctatacc
ttaaaggaagaaattttagcaggaatttaatttggcggatggccggaaaa
gttttttagagggaatttaatttggcggacggacgcaaaaactaaatttg
ccgggaatttaatttggcgtttgctgaaaaatttatccttaaaatggtgt
aaaaacggtaaaaataatgcaaaaacactttaaaaaaatttaatttggcg
ggaatttaatttggcggattctggccgAATCcgccaaatctgccaaattt
tctttccgccaaaatttcttcctttaagtaGCATTTTCTTTGTATGTAAT
TTGAtatatttcgatttgggaggagTTTAGTTTCTTTCAGTCTATATTCT
CTGCCTTATTGGTACCAATATTTGAGCTTTTGAATCCTGAAATCGTACGA
GTAAGTTGATTATTTCTGACTATAATCGAAACCGACAAATAGAGCATAAC
AGTAAAGATGTAGACCATTTCATTCTCAGATTTTGACTGCGGCACATTGC
GTCGATGACAAGACAGAACGACCAAATCAAGTCTACGTTATCGCTGGTgc
tcaaaacataaaaattaccGAATCAAGTCAACAGAGGATAAGAGCAAGGA
GAATTATAATGCATCCATCGTTTCGCAGGGATGAAAATAACACACCTATT
AGCGATATCGCCCTTATCCAACTTTCATCAAAACTGAACATGAATGATCG
CGTCGTAAGAGCATGTTTACCGCAACAAGGAGTCTACCCAACAATTGGAA
AAAGGTGTTACATCACAGGTAAGACGTTTTCAATTCTTGAATAATCATAC
TTACTGATAAATATGTTCTTAATCATTTATTGACCCAGCGGCGCGCGCAA
TGGGCCTTTGAAACACAACTGGTCGAAAATATTTGACTTTGTCGGGCTCA
AACCCTGGTCGGGGCCTATGCGTGCGCAATTATGAATCGACGATTTCAGG
CTAAAATCGAACTACCTGACTTTCTATTGTGTGCATGTGTGAGAAGTAAT
TAATACCTCCAACTTATatggtcaaatctttctttcttaacTAGTAACAA
AAGTTTAAAATAATTAAATCTTTATTACTCGCCCGACTCGAGTctataca
ttgaaaaaaaatcgctCCTGTTGTAAGGCGATTCTGCAGCGGAAAAATAT
GCCAACAGTGCCAACACTGCTGGGCCTATACGCCGCTTAGGATTTCTTCT
GTACATTCAAATGGtcattcttaaattttatttcaaacaatGTTTCAACC
TCCTTAGGTTGCATACCTTTTAATactcaaaaccaaaaaaactcaAACCG
TTTCGCTAAACtgcaaatggtttgggtttgcTTACAGTTGAAAATTACGC
ATGCGCAGTATTATGAAATAGAATTGCGAGAAAGGTCCTTACTCCCTGTG
AGTCACACCACTgacctggaccaagcaatatctcccatctttgattggag
tttttttggaattggtacccgaggagaagccattgcaatgttaaaaatta
acgtctagtgctgctacatcatcaaaagaattcgaggaaaagtagaccta
gcgctctcgatgcatttacaccgctatcgagtagtgccgccattagggta
ccaatttNctttcgcgaaaagggccacaATTTGCGAAAATcatgaaagtt
tctgctcgcgaaagtttgtacgcctaaagtggtgccgccattagggtacc
aattttcaaaaaactccgatcaaagattttgcttggctgggattgagaag
cttggtccaggttatataaaggtcagtgatggTCAAAATGGTAGCATAGC
TGAAAAAAACATTAAAGCTTAGGGCTGCGTAAACAAGGTGTAGTACTTGG
TCAGAATAATGgtttagcaaaacaaaaaattgaatggtGCCGcgtccaat
gaagtataagcccgaagggctagaagtcaatctccattggtaggatttga
agccaacaaatcctaccaaagttacgcggccttgagcggctcccctgggt
tttacacaaatgacagattgaaactaaaatttaccgctaaatttcgaaaa
aaatatcaatcgtaaacaaaggaattgctagattcaatctgtcgtcaaaa
atgcggcgcatttttcaaggcttcactttttcttgcctgagaaaggttag
agattgaactttaGCCCTTCGGGTCTTAAACTCAATGGCCGCGTCTCTGT
TGGCTAAACCCTCGGTTTAGCGAACGAAGAAAACACATAAAAAAGACTGT
TGACTTTGAAAGTCTGTTTAGGCaaacttttaaatgaatcaaTGCGTTCG
CTAAACTCTCTGTTTCACTATTTTGGGTTTTTGGCTAAAACCCTTAGTAG
AGGTCTTCATTAGGTTTACAAACGTTCAGTTGAGATCGGTGTTTTGACGT
CATATGACATCAATGCAATGACCTCAATCTGATGTGCGAGAGCATTGGTT
TCCAGAACCCAGACGTCACATACTGACCATAGTCTAAATTTAGACCATGT
TTACTATGTGGCACCGTCTCACGGAACTGGATCTCCAATGCTTCTTGCGC
CTTcctatcaaatttattttcctcTCTTTTTAAAGGGGTTTAAGATTAGA
CGTTTTATACAGTAAGGTTTCCATAACTTGAACACGCACGAAGAGTTAAA
ATCTGtttgaaatattaaaaattgggttaaagaaaatttcttgtAAGGCG
CATCATTAACTGACGATGACTGCGTTGAAGTTAATGAAACGTTCAAatta
ttagcctatttcataggatttgtGTTTTTTGTACATGATATTTTTCTACG
TCACTGAGGTAACTAACCTTTTGTGGCTGAGCACTCTTTTGCTGATTGAG
ATTAAaggttttacaaaaagaaaaaacaatggaaaaggAGTTTCTTCTCC
ATCCCCTTTGGCAAGGAAATATCTCTTTGGTAAAATTATTACCAGTGTCC
TTAAATGTATTACCATTCATTTACAAAAAGGTAGAAGATTATTCAGGGTT
ACATAAAGAACGCTGATTGAATCataaactctttttttctttagGCTGGG
GTGATCTGTCTTTCGAAGGTTCAAGTCCTGCTCGATTACAACAAGCTAAA
TTGCCGGTGATCAGATCAGATGGTGAAACTGTGGATGTTGGATATAATAG
CCCAAGAGAAGGTGTATCCAATGCATGCCAAGGTGATTCTGGTGGTCCCC
TGAGTTGTCAACGTGATGATGGTACATGGCAAGTTGAAGGTGCTGCAAGC
TATGTTCTAAATAGATGTCAATACCTTAGTGCGTATGCGCCACTCAATAA
ATATTTGAGTTGGGTCAAAAGATATGTGCCTGGCTTGTAAATATTGTTAT
GCAGGTGGCATTTCTgttttggactcaaaacaccATGTGGATTTGGAAAT
TGTCTGTTatcacccagctggcacataaagTTTTTTCGACGTCTATCTAA
TGTTCGCAACGTCCATAACGATAGaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073524TCONS_00073524Clytia hemisphaericatranscript
TCONS_00073525TCONS_00073525Clytia hemisphaericatranscript
TCONS_00073526TCONS_00073526Clytia hemisphaericatranscript
TCONS_00073527TCONS_00073527Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073525-proteinTCONS_00073525-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:139957..150033 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.34	0.37	0	0.22	0.55	0.11	0.43	0.18	1.82	0.28	2.6	13.7	8.12	19.24	2.38	1.33	0.61	1.82	7.31	20.41	0.04	0.1	0.1	0.14	0.72	0.26	1.66	0.89	0.15	0