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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073527 ID=TCONS_00073527|Name=TCONS_00073527|organism=Clytia hemisphaerica|type=transcript|length=735bp
GACATCAACCTGGATTTTGACTGCGGCACATTGCGTCGATGACAAGACAG
AACGACCAAATCAAGTCTACGTTATCGCTGGTgctcaaaacataaaaatt
accGAATCAAGTCAACAGAGGATAAGAGCAAGGAGAATTATAATGCATCC
ATCGTTTCGCAGGGATGAAAATAACACACCTATTAGCGATATCGCCCTTA
TCCAACTTTCATCAAAACTGAACATGAATGATCGCGTCGTAAGAGCATGT
TTACCGCAACAAGGAGTCTACCCAACAATTGGAAAAAGGTGTTACATCAC
AGGCTGGGGTGATCTGTCTTTCGAAGGTTCAAGTCCTGCTCGATTACAAC
AAGCTAAATTGCCGGTGATCAGATCAGATGGTGAAACTGTGGATGTTGGA
TATAATAGCCCAAGAGAAGGTGTATCCAATGCATGCCAAGGTGATTCTGG
TGGTCCCCTGAGTTGTCAACGTGATGATGGTACATGGCAAGTTGAAGGTG
CTGCAAGCTATGTTCTAAATAGATGTCAATACCTTAGTGCGTATGCGCCA
CTCAATAAATATTTGAGTTGGGTCAAAAGATATGTGCCTGGCTTGTAAAT
ATTGTTATGCAGGTGGCATTTCTgttttggactcaaaacaccATGTGGAT
TTGGAAATTGTCTGTTatcacccagctggcacataaagTTTTTTCGACGT
CTATCTAATGTTCGCAACGTCCATAACGATAGaag Run BLAST on NCBI transcript from alignment at scaffold_94:146427..150033+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073527 ID=TCONS_00073527|Name=TCONS_00073527|organism=Clytia hemisphaerica|type=transcript|length=3607bp|location=Sequence derived from alignment at scaffold_94:146427..150033+ (Clytia hemisphaerica)
GACATCAACCTGGGTAAGTATCTTATCCGGACAAGTATTTTGAAATATCT
CAGATATGATTCTAAATATAAGTTTTTTAGTTTCTAGccaaattttaaat
ctttttgttcctatgaaaattttctataccttaaaggaagaaattttagc
aggaatttaatttggcggatggccggaaaagttttttagagggaatttaa
tttggcggacggacgcaaaaactaaatttgccgggaatttaatttggcgt
ttgctgaaaaatttatccttaaaatggtgtaaaaacggtaaaaataatgc
aaaaacactttaaaaaaatttaatttggcgggaatttaatttggcggatt
ctggccgAATCcgccaaatctgccaaattttctttccgccaaaatttctt
cctttaagtaGCATTTTCTTTGTATGTAATTTGAtatatttcgatttggg
aggagTTTAGTTTCTTTCAGTCTATATTCTCTGCCTTATTGGTACCAATA
TTTGAGCTTTTGAATCCTGAAATCGTACGAGTAAGTTGATTATTTCTGAC
TATAATCGAAACCGACAAATAGAGCATAACAGTAAAGATGTAGACCATTT
CATTCTCAGATTTTGACTGCGGCACATTGCGTCGATGACAAGACAGAACG
ACCAAATCAAGTCTACGTTATCGCTGGTgctcaaaacataaaaattaccG
AATCAAGTCAACAGAGGATAAGAGCAAGGAGAATTATAATGCATCCATCG
TTTCGCAGGGATGAAAATAACACACCTATTAGCGATATCGCCCTTATCCA
ACTTTCATCAAAACTGAACATGAATGATCGCGTCGTAAGAGCATGTTTAC
CGCAACAAGGAGTCTACCCAACAATTGGAAAAAGGTGTTACATCACAGGT
AAGACGTTTTCAATTCTTGAATAATCATACTTACTGATAAATATGTTCTT
AATCATTTATTGACCCAGCGGCGCGCGCAATGGGCCTTTGAAACACAACT
GGTCGAAAATATTTGACTTTGTCGGGCTCAAACCCTGGTCGGGGCCTATG
CGTGCGCAATTATGAATCGACGATTTCAGGCTAAAATCGAACTACCTGAC
TTTCTATTGTGTGCATGTGTGAGAAGTAATTAATACCTCCAACTTATatg
gtcaaatctttctttcttaacTAGTAACAAAAGTTTAAAATAATTAAATC
TTTATTACTCGCCCGACTCGAGTctatacattgaaaaaaaatcgctCCTG
TTGTAAGGCGATTCTGCAGCGGAAAAATATGCCAACAGTGCCAACACTGC
TGGGCCTATACGCCGCTTAGGATTTCTTCTGTACATTCAAATGGtcattc
ttaaattttatttcaaacaatGTTTCAACCTCCTTAGGTTGCATACCTTT
TAATactcaaaaccaaaaaaactcaAACCGTTTCGCTAAACtgcaaatgg
tttgggtttgcTTACAGTTGAAAATTACGCATGCGCAGTATTATGAAATA
GAATTGCGAGAAAGGTCCTTACTCCCTGTGAGTCACACCACTgacctgga
ccaagcaatatctcccatctttgattggagtttttttggaattggtaccc
gaggagaagccattgcaatgttaaaaattaacgtctagtgctgctacatc
atcaaaagaattcgaggaaaagtagacctagcgctctcgatgcatttaca
ccgctatcgagtagtgccgccattagggtaccaatttNctttcgcgaaaa
gggccacaATTTGCGAAAATcatgaaagtttctgctcgcgaaagtttgta
cgcctaaagtggtgccgccattagggtaccaattttcaaaaaactccgat
caaagattttgcttggctgggattgagaagcttggtccaggttatataaa
ggtcagtgatggTCAAAATGGTAGCATAGCTGAAAAAAACATTAAAGCTT
AGGGCTGCGTAAACAAGGTGTAGTACTTGGTCAGAATAATGgtttagcaa
aacaaaaaattgaatggtGCCGcgtccaatgaagtataagcccgaagggc
tagaagtcaatctccattggtaggatttgaagccaacaaatcctaccaaa
gttacgcggccttgagcggctcccctgggttttacacaaatgacagattg
aaactaaaatttaccgctaaatttcgaaaaaaatatcaatcgtaaacaaa
ggaattgctagattcaatctgtcgtcaaaaatgcggcgcatttttcaagg
cttcactttttcttgcctgagaaaggttagagattgaactttaGCCCTTC
GGGTCTTAAACTCAATGGCCGCGTCTCTGTTGGCTAAACCCTCGGTTTAG
CGAACGAAGAAAACACATAAAAAAGACTGTTGACTTTGAAAGTCTGTTTA
GGCaaacttttaaatgaatcaaTGCGTTCGCTAAACTCTCTGTTTCACTA
TTTTGGGTTTTTGGCTAAAACCCTTAGTAGAGGTCTTCATTAGGTTTACA
AACGTTCAGTTGAGATCGGTGTTTTGACGTCATATGACATCAATGCAATG
ACCTCAATCTGATGTGCGAGAGCATTGGTTTCCAGAACCCAGACGTCACA
TACTGACCATAGTCTAAATTTAGACCATGTTTACTATGTGGCACCGTCTC
ACGGAACTGGATCTCCAATGCTTCTTGCGCCTTcctatcaaatttatttt
cctcTCTTTTTAAAGGGGTTTAAGATTAGACGTTTTATACAGTAAGGTTT
CCATAACTTGAACACGCACGAAGAGTTAAAATCTGtttgaaatattaaaa
attgggttaaagaaaatttcttgtAAGGCGCATCATTAACTGACGATGAC
TGCGTTGAAGTTAATGAAACGTTCAAattattagcctatttcataggatt
tgtGTTTTTTGTACATGATATTTTTCTACGTCACTGAGGTAACTAACCTT
TTGTGGCTGAGCACTCTTTTGCTGATTGAGATTAAaggttttacaaaaag
aaaaaacaatggaaaaggAGTTTCTTCTCCATCCCCTTTGGCAAGGAAAT
ATCTCTTTGGTAAAATTATTACCAGTGTCCTTAAATGTATTACCATTCAT
TTACAAAAAGGTAGAAGATTATTCAGGGTTACATAAAGAACGCTGATTGA
ATCataaactctttttttctttagGCTGGGGTGATCTGTCTTTCGAAGGT
TCAAGTCCTGCTCGATTACAACAAGCTAAATTGCCGGTGATCAGATCAGA
TGGTGAAACTGTGGATGTTGGATATAATAGCCCAAGAGAAGGTGTATCCA
ATGCATGCCAAGGTGATTCTGGTGGTCCCCTGAGTTGTCAACGTGATGAT
GGTACATGGCAAGTTGAAGGTGCTGCAAGCTATGTTCTAAATAGATGTCA
ATACCTTAGTGCGTATGCGCCACTCAATAAATATTTGAGTTGGGTCAAAA
GATATGTGCCTGGCTTGTAAATATTGTTATGCAGGTGGCATTTCTgtttt
ggactcaaaacaccATGTGGATTTGGAAATTGTCTGTTatcacccagctg
gcacataaagTTTTTTCGACGTCTATCTAATGTTCGCAACGTCCATAACG
ATAGaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073527-exon-scaffold_94-1491911889:146427..146439 | TCONS_00073527-exon-scaffold_94-1491911889:146427..146439 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1510915933:146427..146439 | TCONS_00073527-exon-scaffold_94-1510915933:146427..146439 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1575043694:146427..146439 | TCONS_00073527-exon-scaffold_94-1575043694:146427..146439 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1491911889:147036..147324 | TCONS_00073527-exon-scaffold_94-1491911889:147036..147324 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1510915933:147036..147324 | TCONS_00073527-exon-scaffold_94-1510915933:147036..147324 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1575043694:147036..147324 | TCONS_00073527-exon-scaffold_94-1575043694:147036..147324 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1491911889:149601..150033 | TCONS_00073527-exon-scaffold_94-1491911889:149601..150033 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1510915933:149601..150033 | TCONS_00073527-exon-scaffold_94-1510915933:149601..150033 | Clytia hemisphaerica | exon |
| TCONS_00073527-exon-scaffold_94-1575043694:149601..150033 | TCONS_00073527-exon-scaffold_94-1575043694:149601..150033 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:146427..150033 + |
Blast
BLAST of TCONS_00073527 vs. Swiss-Prot (Human)
Match: CEL2A (Chymotrypsin-like elastase family member 2A OS=Homo sapiens GN=CELA2A PE=1 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 4.443e-27 Identity = 70/211 (33.18%), Postives = 109/211 (51.66%), Query Frame = 2
Query: 5 STWILTAAHCVDD-KTERPNQVYVIAGAQNIKITESSQQXXXXXXXXMHPSFRRDENNTPIS---DIALIQLSSKLNMNDRVVRACLPQQGVYPTIGKRCYITGWGDLSFEGSSPARLQQAKLPVIRSDGETVDVGYNSP---------REGVSNACQGDSGGPLSCQRDDGTWQVEGAASYVLNR-CQYL---SAYAPLNKYLSWVKRYV 586
++W+LTAAHC+ +T R V G N+ + ES + +I++H +D N+ IS DIAL++L++ +++ D++ ACLP G CY+TGWG L G+ P LQQ +L V+ + + S +GV ++C GDSGGPL+CQ DG WQV G S+ C Y S + ++ Y+ W+ +
Sbjct: 65 NSWVLTAAHCISSSRTYR-----VGLGRHNLYVAESGSLAVSVSKIVVH----KDWNSNQISKGNDIALLKLANPVSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLQTNGAVPDVLQQGRLLVVDYATCSSSAWWGSSVKTSMICAGGDGVISSCNGDSGGPLNCQASDGRWQVHGIVSFGSRLGCNYYHKPSVFTRVSNYIDWINSVI 266
The following BLAST results are available for this feature:
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