XLOC_045075 (gene) - C. hemisphaerica

Overview
NameXLOC_045075
Unique NameXLOC_045075
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_80:86023..94691+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045075 ID=XLOC_045075|Name=XLOC_045075|organism=Clytia hemisphaerica|type=gene|length=8669bp|location=Sequence derived from alignment at scaffold_80:86023..94691+ (Clytia hemisphaerica)
aatcagggaccgctatgcagtcctctgggaaaaaacgacgggtccaaagg
gaccgcagtgcggtcgcgtgggactgaaagggttaatatAGATAACATAG
TCAGTGTTTcttcttagaaaataaaaagatatcttacCCATTTCAGCAGC
CATTGAAGCTAATCCACCATAAACAAATGGTCTAAGATCCATaactgaaa
attgaatttttacaaatgATGTTCAGcttcaaaaacaattaaaaatggaA
TTATGTGCACAAAACtgcaaaataattttacatCAAACGTGATATCATAG
CTTGTCTACCATTTTGTATCTAGGTTTAGTAATTTACAGATTGGAGCTGG
CTATACCCTGATATACTAATCCTGAGAATCGGTAAAATAACAATTTTCCA
GCACCATGATTGGTCGAAAACTCTTTTAGCCAATCAGCTTTCAAAATCTG
GAAGTCACCGCGAACGTACAAAAacagaaatttcaattttatggcAGAAC
CGCTCAAATCCTTCAAAAAGGACGACAGGCATCACTTAATCcaaagtaaa
aaaacaaaaaatacaagaaTGTCTGCCCCTACAAGAAGTCAACGTCTTGC
TGCCAAGCGTGTGAGTagtatttattaatttttttcatcactTTATTTCC
TACGTCTCTGAGTACTGTACATTCAAACTTAACTATAACCAAGTCTTTTG
ACGGCGGTGATTCTACGATAAAAGCTTGTATTAGACCCAAGAAAAGCAAC
TAATGCTTCTAATATTTGTGTCTTAGAAACAGAAGTATgaaatttttaac
tcaaattgttgaaaagtgaaaattcatcCCAAGTaggaaaaagtttaaaa
tgcttcaaaatgtgaaatttgTTTTAGATTCTGACCTTCCAACCCTACTG
TCGTTTCGTATAAGATTctcatttccgcactaagattcctttgccacttt
tctaatggaaaaagatcaaatacttctggtagttgaaaaataagccTCAG
AAAGAAGTAAGGCACATTTTGTGAGTAAACACAGGATTTTCCTTACCTTA
CAGGCAAATTTCCAGGGTTTTTGAGCTGCTatcgtttttatttcaaagat
tgaGTTTGAATTCAGTTTgtaaaacaaaataatcaacCCAGGCTCTGTTT
AATTAGTTGGGAACTATTAAGACACAAAGAAATTTAACCTTAGATAGCCA
TTcattccagggtcaaattgaaactattctggtggcaatcaaacctagtt
catcttgtagaccttcaaaaaagaaaaaaaaatgaggggtcatacacctc
ctaatgataagcggtaccggagatattgagattttggttcccctaaaata
gcacctttttagacatttgaggttgaaaatttagcccagaaatggACACG
ATCAATAATATGAGACACCATTGTGGACATcataaaattgtccaaaaatt
tgttttgttaataagtttctgaattttaattgtcATGGGTCGAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naattaaaaacttcatttttgacaaagatatgataaaaaattaacattgt
taactttttatcaattcaatgaaagtctaaaaagtctgaaatcccccaaa
atgaaaattaatttattaCTATGTTTAATTTAGCCATATattaaatattt
acaaaatttatcagagcgttaacaaaatattgataaattttgTAATACTG
GTACACTCAGAAAATTACGAAAATGGTTTGCTGCCCTTGGAGCCTAGCAA
GTTAGATTTTAGACAATTTCATGAGAAAGTGAATTTATCAGATAGAAATA
ACAATTGTTGCATGTATTTTGGACACAAAAATGATaagtttttaacaatt
ttggcaaaaattgaacttaatcttagcaaggaaaaaatataagatatcaa
gttttaatttaaGTCAATTTGGGGCAATTTTTAGGTTTCAAATCAGGGTT
CTAAAACTTAAATTAGTGAAATGTACTTTCAGATAACCAATCTTTAAATC
TGACAAGTTAAAGATATGCGGATGCAACGTTTCAGGATAATAGAATATGA
AAATTTGTAATTCGTAGTACTCTAGATTTGGAGAAAACCCTGTTATAGTG
TTTCACGTTAGTTCTGTTTAgtattttgttaacattttatcagtattttt
gttaatATTAGTGTTTGATTTATTCTAGGGTGTTTTTAATTAGGTTGTAG
ATCAGCTTCTTGAGCATTTTGAAAGTCTTAATTANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTAgactattttttatcatttccaaaaaaaagaccttgtt
aattttttatcatttttttgtcaTCACTTTAGGTGTTAATAAGTTGTCTT
GATTTGATCGTTGCGACACAGGACCTCAACAGTGTTAaagatttatcaat
ttttgaagataacataTCCACTGATAGTTGTCAATATTCACTATGTTCAA
GtaattgaaaaaagtttaacacatGGTATCAATGTCCACAAGTAGGCCAA
AATTGGTCTCATATTATTGATCGTGTCCAAATggcatataaaatggcacc
gaaatatacacttttttatggttttccaatttcaaaatctgataaaaaaa
atccagatatcttcattttgactgcagactttcatcaaattctttttgta
atgacttgctaacacttcaaggaagaaatgaaaaaactttttttttgaaa
aagaagacattgcattgcaaaaaaaaataaaaacgttataaagcgctgtg
gaggaaaaattccccatggcatataaataactgttttaggctaaaaaagg
gtcaaatttttcagtggtactagtctctataattctagtcctcattttca
ggctgaaaatgcttgccaaagtatgaaaagtaaaaaataataactttaat
gaaagaattaatttcagagagtagcactattggatttctcaggtattttc
tgataaatatggaaagtttcactgtctgaacattttttcctccgcagctg
tttgaaatcaaagatttggaaaagagttggaacgaatttttagacaaaag
taTAGAATGAAAAGATCACACGTAGAAGATGTTGAGATTTCGCTTGCCAA
AAGCAAGTTAAGATGGCTTGGGCATGTTGTCAGGATGGATGATATTCGAC
ACGTGAAAATGTTGTTATATGGAGAAAGAACTGATGGCTCCAGACCAATC
GGAAGAGCTAAACTCCGATATAAAGATAATATTAAATCTCTCTTGAAAAT
TGGAGTTTTGTTAGAAACGTGGCAAGAACTTGCTTTGAACAGAACTAGAT
TTTcagaaggtgtcatccccctcCTTAAGAAAGGGTGTCCAAACTATTGA
AAAGGCCTGGAAATTTGCCTGCTTTAGAtacaaaccctttccaatctcat
gcgCTAGTTatcccaaaaaaaattggaaagattccggaaaagtgacaaga
atcttagtgcagaaatgggaaacttatacAAAACGATGGTAGACTTTACG
AAATTTTAATCATCATGCTGGGCAGCCAACTAACCATATTACTCTAAAGT
GCTTGCTGTAGAACCAGCAAGAACAATAAATTCTATTTGTCTTGACTAAT
GAATCTAACTAGGATGATTGGATCTTTCAGTGATcaattctattttcttt
ttgcaGGCAATGAAAGCCAGTCAATTAGCAAACCAAGAAAATGTTGGTGT
TCCATCTGCAAACTTAAAGAAAGTGAAAGGAAGATCTGGCAAAAGAAGTG
TTTCTGAAATGTCTCCAGCTAAAGCTCCTGTCACAAGGAAGAGAACTGCT
TTTGGTGACATCACAAATGTAAGAAGCACAATTTAATTCAGTTTCTttcc
atttttgaaatttaactttGATTATCCAAAAAGCTGAGCAGTTCAATTAG
CAAAGCTGTATTGATGAATTCACTTTGTGACAGACATAATTTTTCAAaca
gaattttctgaaaataatgTTTCAGGCGATTCATGCACATGCTGAAAGAA
TTTCAATGGGAAAAAAGAAAGCTCCTGTTGGCCCCAGTAAAAAGACAACA
AGACCAATGACCAGAAACAGCTCACAAaccaaaattgatttgaaaaagcC
AGTTGTTGGTGGAAACGCTATTGTTAGAAATAGGTTTGGCAAACTGAAAG
AAGATGAAGTTGCTATACATGAAGCGGTGTTGAGCTCAGACCTTATCAGC
TCTagcaatgaaaatcaaaatgaagcAATGACATCTTTCAGCAGTGAAAC
TATGAGCATGCTTGAAGGCAGCTTCAATGACAGTTTGACAGCATCAGGAA
AAAGGAAACCAAGACCAGTCCCACGCATTCCTATGGAAATACTCAAAGAT
TCACCAGTACCAGAAACATCAGCAGTGAGTTACAAATGCATTCAAGTAGT
TTTAAAGTGGAtgagaaaagataatttttgtttaaatttatATAAGTAAT
TCTTACAAAGCTTTCCTTCAATTCATAAACTTCTTAATTTGATAATGCTA
TGTTAAATTTAAATGCACTTTTTAAAAAGGAAATTATGACAGGCCTAATT
GAATTGTATAGATTGTAAATgctcaaaacttttttcttgtatCAGGCTGA
CACAACTCTTCCAGATGGAGTTAAACCTTACGATCTTGATGAAGACCCCA
ACAGTGTTTCTGAATATGCAGATAGCATCTTCAGGAATATGAAAAAGCGT
GAACTCAAATTTGCTGTGCAAAATTATTTGATTCAAGAAGGCTCTGAAAC
TACTGGTGCAATGAGGGCCATTCTGGTTGATTGGCTTGTTGAGgtgcaag
aaaattttgaactctACCATGAGACTCTTTATCTGGCTGTCAAAATCACT
GACTTCTATCTTCAACATAATCCTACACCAAAAGAATTATTACAGTTGGT
TGGCGCAACAGCTTTATTGTTATCCTGTAAAATAGAGGTAATTTACATTG
ACAGTTTTCTACAAATCTTTGACtgatatcttttttaaatagacgatatc
agctttccgaattctccccaaatgattacccatgatgcattgttagggtt
agggttatcgtccgtgaatctttttgcgcaatgcatcatgggtaatcatc
cggggagaattcggttaagccgatatcgtctattggcaTTTAAAAGAGTC
CTTGAACATTCACTTTTCTGTACTTGGCCCATAGCTTTTTTAAACGAAAC
TTTATATTGTCTTTCATAGGAGCGAAGTCCACCACCACTCGatgattttc
aatttatttgCGACGATGCCTACACTCACAAACAGTTTGTTGATATGGAA
TTGAAAGTATTGACAGCTATTGATTTCGAATTAAACATTCCAGTTCCTTA
TCGATTCTTGAGGAGGTTCGCAAGGGTAAGTGCAGTTTTAATGATCCTTT
GAAAATTATAATACTGATAAAAGATTATGCCCAATGATGTAAACTGACCG
AATGAGCAATAATTGTTTTAGCAATCAGGTTTCAAATGATTTCTTTCTCT
TGCATTCTTTAGTTTTAGCAAATTATTTTGTCATTACCAAATCCTTTTCC
TTCTGTTTCCTTATACTGATTGCTAAGGCAAGGTTATGATCCATAGATTA
TGAGAGCTGAGGGCATGTTGGGTTTCCATTGTACATGAAAgaattgaatt
aaaagttatgctAGAATAACCTCTTCCATGCATNGAAGTTGCTATACATG
AAGCGGTGTTGAGCTCAGACCTTATCAGCTCTagcaatgaaaatcaaaat
gaagcAATGACATCTTTCAGCAGTGAAACTATGAGCATGCTTGAAGGCAG
CTTCAATGACAGTTTGACAGCATCAGGAAAAAGGAAACCAAGACCAGTCC
CACGCATTCCTATGGAAATACTCAAAGATTCACCAGTACCAGAAACATCA
GCAGTGAGTTACAAATGCATTCAAGTAGTTTTAAAGTGGATGAGAAAAGA
TAATTAAATTTATATAAGTAATTCATACAAAGCTTTCCTTCAATTCATAA
ACTTCTTAATTTGATAATGCTATGTTAAATTTAAATGCACTTTTTAAAAA
GGAAATTATGACAGGCCTAATTGAATTGTATAGATTGTAAATgctcaaaa
cttttttcttgtatCAGGCTGACACAACTCTTCCAGATGGAGTTAAACCT
TACGATCTTGATGAAGACCCCAACAGTGTTTCTGAATATGCAGATAGCAT
CTTCAGGAATATGAAAAAGCGTGAACTCAAATTTGCTGTGCAAAATTATT
TGATTCAAGAAGGCTCTGAAACTACTGGTGCAATGAGGGCCATTCTGGTT
GATTGGCTTGTTGAGgtgcaagaaaattttgaactctACCATGAGACTCT
TTATCTGGCTGTCAAAATCACTGACTTCTATCTTCAACATAATCCTACAC
CAAAAGAATTATTACAGTTGGTTGGCGCAACAGCTTTATTGTTATCCTGT
AAAATAGAGGTAATTTACATTGACAGTTTTCTACAAATCTTTGACtgata
tcttttttaaatagacgatatcagctttccgaattctccccaaatgatta
cccatgatgcattgttagggttagggttatcgtccgtgaatctttttgcg
caatgcatcatgggtaatcatccggggagaattcggttaagccgatatcg
tctattggcaTTTAAAAGAGTCCTTGAACATTCACTTTTCTGTACTTGGC
CCATAGCTTTTTTAAACGAAACTTTATATTGTCTTTCATAGGAGCGAAGT
CCACCACCACTCGatgattttcaatttatttgCGACGATGCCTACACTCA
CAAACAGTTTGTTGATATGGAATTGAAAGTATTGACAGCTATTGATTTCG
AATTAAACATTCCAGTTCCTTATCGATTCTTGAGGAGGTTCGCAAGGGTA
AGTGCAGTTTTAATGATCCTTTGAAAATTATAATACTGATAAAAGATTAT
GCCCAATGATGTAAACTGACCGAATGAGCAATAATTGTTTTAGCAATCAG
GTTTCAAATGATTTCTTTCTCTTGCATTCTTTAGTTTTAGCAAATTATTT
TGTCATTACCAAATCCTTTTCCTTCTGTTTCCTTATACTGATTGCTAAGG
CAAGGTTATGATCCATAGATTATGAGAGCTGAGGGCATGTTGGGTTTCCA
TTGTACATGAAAgaattgaattaaaagttatgctAGAATAACCTCTTCCA
TGCATTTTGTAGGTGACTGGGATGAGCATGCAAATTTTAACTCTATCGCG
ATATTTATTGGAATTATCATTGCACGAGTCGAAGTTTGTTGCCGAAAGAC
CGTCCAAAGTTGCAGCTGCTTGTTTATGCTTATCTTTGAAACTAAAGAAA
GAACATTCATGGAATGTCAACTTTTCATATCACACTGGATACGAAGAACG
AGAATTAGAGAAATTAGTTAGGGACTTGAACAAAATGATGACAGATGCTC
CCAAAAATAAATTACAGACTGTACGCACTAAATATTCTCACACAATCTTT
TACGAAGTTGCCAAAACAGAGCCATTGCCGGCTAGCGAATTACAATGATC
ATCGTTGAGTGGAACATTTGTCGATGCTTTGGTTTGACACACCCTCGTTA
TTGGATAATGGATtatgttggattttgttgaTGCATGCTGAATTGTACAT
CACCCAAAGTGTTTCTTGAGCACTCAATTAATGTTATTCGcactttggat
ttttatttcGAATACCACTTTATGACAAATACTCTAACAAAagggaaaat
tttattttacaattttagtaTTACGAAACGataattttattcaattttag
tGAAGTGTAAATTTTTTGTACATATTATCTTATTGCATACTACCCTACTT
TTTTATACTTCgattattt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072616TCONS_00072616Clytia hemisphaericatranscript
TCONS_00072617TCONS_00072617Clytia hemisphaericatranscript
TCONS_00072618TCONS_00072618Clytia hemisphaericatranscript
TCONS_00072619TCONS_00072619Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072616-proteinTCONS_00072616-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:86023..94691 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.03	21.83	31.71	34.77	214.49	164.1	77.22	78.17	49.12	64.83	27.41	25.62	10.94	10.3	24.81	27.03	58.17	37.16	4.99	4.78	21.03	17.31	317.28	274.97	305.38	173.81	22.8	21.96	284.85	322.09