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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072619 ID=TCONS_00072619|Name=TCONS_00072619|organism=Clytia hemisphaerica|type=transcript|length=1372bp
AGTTGCTATACATGAAGCGGTGTTGAGCTCAGACCTTATCAGCTCTagca
atgaaaatcaaaatgaagcAATGACATCTTTCAGCAGTGAAACTATGAGC
ATGCTTGAAGGCAGCTTCAATGACAGTTTGACAGCATCAGGAAAAAGGAA
ACCAAGACCAGTCCCACGCATTCCTATGGAAATACTCAAAGATTCACCAG
TACCAGAAACATCAGCAGCTGACACAACTCTTCCAGATGGAGTTAAACCT
TACGATCTTGATGAAGACCCCAACAGTGTTTCTGAATATGCAGATAGCAT
CTTCAGGAATATGAAAAAGCGTGAACTCAAATTTGCTGTGCAAAATTATT
TGATTCAAGAAGGCTCTGAAACTACTGGTGCAATGAGGGCCATTCTGGTT
GATTGGCTTGTTGAGgtgcaagaaaattttgaactctACCATGAGACTCT
TTATCTGGCTGTCAAAATCACTGACTTCTATCTTCAACATAATCCTACAC
CAAAAGAATTATTACAGTTGGTTGGCGCAACAGCTTTATTGTTATCCTGT
AAAATAGAGGAGCGAAGTCCACCACCACTCGatgattttcaatttatttg
CGACGATGCCTACACTCACAAACAGTTTGTTGATATGGAATTGAAAGTAT
TGACAGCTATTGATTTCGAATTAAACATTCCAGTTCCTTATCGATTCTTG
AGGAGGTTCGCAAGGGTGACTGGGATGAGCATGCAAATTTTAACTCTATC
GCGATATTTATTGGAATTATCATTGCACGAGTCGAAGTTTGTTGCCGAAA
GACCGTCCAAAGTTGCAGCTGCTTGTTTATGCTTATCTTTGAAACTAAAG
AAAGAACATTCATGGAATGTCAACTTTTCATATCACACTGGATACGAAGA
ACGAGAATTAGAGAAATTAGTTAGGGACTTGAACAAAATGATGACAGATG
CTCCCAAAAATAAATTACAGACTGTACGCACTAAATATTCTCACACAATC
TTTTACGAAGTTGCCAAAACAGAGCCATTGCCGGCTAGCGAATTACAATG
ATCATCGTTGAGTGGAACATTTGTCGATGCTTTGGTTTGACACACCCTCG
TTATTGGATAATGGATtatgttggattttgttgaTGCATGCTGAATTGTA
CATCACCCAAAGTGTTTCTTGAGCACTCAATTAATGTTATTCGcactttg
gatttttatttcGAATACCACTTTATGACAAATACTCTAACAAAagggaa
aattttattttacaattttagtaTTACGAAACGataattttattcaattt
tagtGAAGTGTAAATTTTTTGTACATATTATCTTATTGCATACTACCCTA
CTTTTTTATACTTCgattattt Run BLAST on NCBI transcript from alignment at scaffold_80:92509..94691+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072619 ID=TCONS_00072619|Name=TCONS_00072619|organism=Clytia hemisphaerica|type=transcript|length=2183bp|location=Sequence derived from alignment at scaffold_80:92509..94691+ (Clytia hemisphaerica)
AGTTGCTATACATGAAGCGGTGTTGAGCTCAGACCTTATCAGCTCTagca
atgaaaatcaaaatgaagcAATGACATCTTTCAGCAGTGAAACTATGAGC
ATGCTTGAAGGCAGCTTCAATGACAGTTTGACAGCATCAGGAAAAAGGAA
ACCAAGACCAGTCCCACGCATTCCTATGGAAATACTCAAAGATTCACCAG
TACCAGAAACATCAGCAGTGAGTTACAAATGCATTCAAGTAGTTTTAAAG
TGGATGAGAAAAGATAATTAAATTTATATAAGTAATTCATACAAAGCTTT
CCTTCAATTCATAAACTTCTTAATTTGATAATGCTATGTTAAATTTAAAT
GCACTTTTTAAAAAGGAAATTATGACAGGCCTAATTGAATTGTATAGATT
GTAAATgctcaaaacttttttcttgtatCAGGCTGACACAACTCTTCCAG
ATGGAGTTAAACCTTACGATCTTGATGAAGACCCCAACAGTGTTTCTGAA
TATGCAGATAGCATCTTCAGGAATATGAAAAAGCGTGAACTCAAATTTGC
TGTGCAAAATTATTTGATTCAAGAAGGCTCTGAAACTACTGGTGCAATGA
GGGCCATTCTGGTTGATTGGCTTGTTGAGgtgcaagaaaattttgaactc
tACCATGAGACTCTTTATCTGGCTGTCAAAATCACTGACTTCTATCTTCA
ACATAATCCTACACCAAAAGAATTATTACAGTTGGTTGGCGCAACAGCTT
TATTGTTATCCTGTAAAATAGAGGTAATTTACATTGACAGTTTTCTACAA
ATCTTTGACtgatatcttttttaaatagacgatatcagctttccgaattc
tccccaaatgattacccatgatgcattgttagggttagggttatcgtccg
tgaatctttttgcgcaatgcatcatgggtaatcatccggggagaattcgg
ttaagccgatatcgtctattggcaTTTAAAAGAGTCCTTGAACATTCACT
TTTCTGTACTTGGCCCATAGCTTTTTTAAACGAAACTTTATATTGTCTTT
CATAGGAGCGAAGTCCACCACCACTCGatgattttcaatttatttgCGAC
GATGCCTACACTCACAAACAGTTTGTTGATATGGAATTGAAAGTATTGAC
AGCTATTGATTTCGAATTAAACATTCCAGTTCCTTATCGATTCTTGAGGA
GGTTCGCAAGGGTAAGTGCAGTTTTAATGATCCTTTGAAAATTATAATAC
TGATAAAAGATTATGCCCAATGATGTAAACTGACCGAATGAGCAATAATT
GTTTTAGCAATCAGGTTTCAAATGATTTCTTTCTCTTGCATTCTTTAGTT
TTAGCAAATTATTTTGTCATTACCAAATCCTTTTCCTTCTGTTTCCTTAT
ACTGATTGCTAAGGCAAGGTTATGATCCATAGATTATGAGAGCTGAGGGC
ATGTTGGGTTTCCATTGTACATGAAAgaattgaattaaaagttatgctAG
AATAACCTCTTCCATGCATTTTGTAGGTGACTGGGATGAGCATGCAAATT
TTAACTCTATCGCGATATTTATTGGAATTATCATTGCACGAGTCGAAGTT
TGTTGCCGAAAGACCGTCCAAAGTTGCAGCTGCTTGTTTATGCTTATCTT
TGAAACTAAAGAAAGAACATTCATGGAATGTCAACTTTTCATATCACACT
GGATACGAAGAACGAGAATTAGAGAAATTAGTTAGGGACTTGAACAAAAT
GATGACAGATGCTCCCAAAAATAAATTACAGACTGTACGCACTAAATATT
CTCACACAATCTTTTACGAAGTTGCCAAAACAGAGCCATTGCCGGCTAGC
GAATTACAATGATCATCGTTGAGTGGAACATTTGTCGATGCTTTGGTTTG
ACACACCCTCGTTATTGGATAATGGATtatgttggattttgttgaTGCAT
GCTGAATTGTACATCACCCAAAGTGTTTCTTGAGCACTCAATTAATGTTA
TTCGcactttggatttttatttcGAATACCACTTTATGACAAATACTCTA
ACAAAagggaaaattttattttacaattttagtaTTACGAAACGataatt
ttattcaattttagtGAAGTGTAAATTTTTTGTACATATTATCTTATTGC
ATACTACCCTACTTTTTTATACTTCgattattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072619-exon-scaffold_80-1491911889:92509..92725 | TCONS_00072619-exon-scaffold_80-1491911889:92509..92725 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1510915933:92509..92725 | TCONS_00072619-exon-scaffold_80-1510915933:92509..92725 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1575043694:92509..92725 | TCONS_00072619-exon-scaffold_80-1575043694:92509..92725 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1491911889:92940..93281 | TCONS_00072619-exon-scaffold_80-1491911889:92940..93281 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1510915933:92940..93281 | TCONS_00072619-exon-scaffold_80-1510915933:92940..93281 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1575043694:92940..93281 | TCONS_00072619-exon-scaffold_80-1575043694:92940..93281 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1491911889:93564..93719 | TCONS_00072619-exon-scaffold_80-1491911889:93564..93719 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1510915933:93564..93719 | TCONS_00072619-exon-scaffold_80-1510915933:93564..93719 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1575043694:93564..93719 | TCONS_00072619-exon-scaffold_80-1575043694:93564..93719 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1491911889:94035..94691 | TCONS_00072619-exon-scaffold_80-1491911889:94035..94691 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1510915933:94035..94691 | TCONS_00072619-exon-scaffold_80-1510915933:94035..94691 | Clytia hemisphaerica | exon |
| TCONS_00072619-exon-scaffold_80-1575043694:94035..94691 | TCONS_00072619-exon-scaffold_80-1575043694:94035..94691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:92509..94691 + |
Blast
BLAST of TCONS_00072619 vs. Swiss-Prot (Human)
Match: CCNB3 (G2/mitotic-specific cyclin-B3 OS=Homo sapiens GN=CCNB3 PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 1.709e-45 Identity = 137/317 (43.22%), Postives = 193/317 (60.88%), Query Frame = 2
Query: 80 FSSETMSMLEGSFNDSLTASGKRKPRPVPRIPMEILKDSPVPETSAADTTLPDGVKPY-DLDED---PNSVSEYADSIFRNMKKRELKFAVQNYLIQEGSETTGAMRAILVDWLVEVQENFELYHETLYLAVKITDFYLQHNPTPKEXXXXXXXXXXXXSCKIEERSPPPLDDFQFICDDAYTHKQFVDMELKVLTAIDFELNIPVPYRFLRRFARVTGMSMQIXXXXXXXXXXXXXXXKFVAERPXXXXXXXXXXXXXXXXEHSWNVNFSYHTGYEERELEKLVRDLNKMMTDAPKNKLQTVRTKYSHTIFYEVAK 1018
FS+ S+ E S ++T+ GK + E D PV S P + P D+DED P+ YA IF MK+RE +F + +Y+ ++ E T MRAILVDWLVEVQ +FE+ HETLYLAVK+ D YL K+ LQL+GATA +++ K EE + P +DDF +ICDD Y + + ME+ +L + ++NIP+ Y FLRR+AR +M+ LTLSRY+ E++L E +V E+ SK+AAA L L+L +KK W +++GY EL LVR LNK++T + + L+ V KYSH +F+EVAK
Sbjct: 1060 FSTTPESITEKSSIATMTSVGKSRTT-TESSACESASDKPV---SPQAKGTPKEITPREDIDEDSSDPSFNPMYAKEIFSYMKEREEQFILTDYMNRQI-EITSDMRAILVDWLVEVQVSFEMTHETLYLAVKLVDLYLMKAVCKKDKLQLLGATAFMIAAKFEEHNSPRVDDFVYICDDNYQRSEVLSMEINILNVLKCDINIPIAYHFLRRYARCIHTNMKTLTLSRYICEMTLQEYHYVQEKASKLAAASLLLALYMKKLGYWVPFLEHYSGYSISELHPLVRQLNKLLTFSSYDSLKAVYYKYSHPVFFEVAK 1371
The following BLAST results are available for this feature:
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