XLOC_044900 (gene) - C. hemisphaerica

Overview
NameXLOC_044900
Unique NameXLOC_044900
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_76:102012..107272+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044900 ID=XLOC_044900|Name=XLOC_044900|organism=Clytia hemisphaerica|type=gene|length=5261bp|location=Sequence derived from alignment at scaffold_76:102012..107272+ (Clytia hemisphaerica)
GCTGAAGGTAGCGATTTACCGAGACGAACCAATCAACAAAACAATATAAA AGCTGTGATGATTGATAGGTAAGTATAAATAGAGATAGAGTCTCGTAAGC GAAAATCACTATCATTTCCTAGTATTGCTCAATGTCAATCGAAACAGTTT TGTCATATATGTGCTGATAATATTATGCTTGCTGATTGCTGAAGGTAGCG ATTTACCGAGACGGACCAATCAACGAAACGATATAAAAGCTGTGATGATT GATATGTAAGTATAAATAGAGATAGAAAGTCTCGTAAGCGAAAATCATAA TTATTTCGATTACGAGGAACTGAGTGACAAGACAACATTAATTTTGAGCA ACAATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTT CCAAGGTAAATTGTATTGTGTTTTTGACTGCAAACGTGGTGTATATCAGC TGGCTCAAATTTATTGGGAACTTGGTACCTCAGGAAAATGGGAGTTTTAA TCtaaatttcaaagaattttaaagAGATATTGTGCTGTGAAATGGAATTT AATTACACGACGATGGAggcttttttagaaataaatttgagaaaagcgtg aaaaaaagaacaaactatataagaacattaggcttcgACATGGctgtaaa atgttaagaaaaagttgagaacattttgagtctttgcggactctaaaaga cacaatttcttagaaaaCCCAATAAAAATACTCATCATAAAAGGGTgaga ttaagaacattttaagaaactgtttaggctcaaaactcaaaaagttactt AATTAAGAAACTAAGAAAGTCCGAGGACTTCAAAAAATTAGTTgatgatc ttataaaaaaatacgtgTAGTACCTGAAAAGGCCACGGGCTCTGCCGAAA ATCTTTTGATAAGTGAGGTAAGGGTAAGGGTAccaggtttgcgaggtgac gggtatgtccaagcaaaaattcagaaatcggCCCTTTGAGAAAAGACtga atttcaaagtttttgtgACTCTTTGATGGactatttttacaatttttagc tcaaaattaCCTGATTTAATGACTTTTTAAGGGTGTCGTCGATGTTTGAT ATTATgtaatttttggacctattcAGAGGTTCAATTGctaaattttcgtt tttgtacccctttgatgGACTTTCGAGCACGTACCAAGTATACCCACTTT TCCAAGTATCTctcgggaaattttttttaagccGGTGTGTTTTTAGCCGT TCTAATCTTAGCCATTCGATTAAGTTATTTGTAACGCCAACATGTTTTCT ACAACATGGCTTATTGTAATCCATTTCTTTATAGCACAAACACTGCGCGA GTTGAAATTCGTTGGAGGTTCAGTCGGAACAACATCCGTTTACAGCCTAC CAAGTTGGAAAGCTGAAAATGCCTTTCTGCAGGTTTGTGATTAAAACCTT AATTgtcaactacacgtttttttttattagaacaccttaaatttggctga gcctggatgtgcttattttttagcaattttcagcctagaatgttcttaaa tgcgttcttaatttttcagactactctaaatcgacaatatgatacaaaat aaagagcactcaaatttggcaaaatttggacaatatttgactctcgactt ttgaagatccacccctaaattcggtagaaaactgcttaaaaagaggaaaa aattgtagtttcttgtcatttttttccaaactgaggctgggcatgttctt aagatgttcttaatttttcgacgaatttcagcctatatgttcttataaac taggttctaataaaaaaaaaacgtgtaggtttAATTCCCACCTAACTTCT TTGTATAGATCAAACTCCTACATCCCTTTAAAGTAGCTCTGAAACGAATA GgaaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACG ACACTCTGCTTTGACGTGATGATCTGATAAGCTTTTTCNAAACGAATAGg aaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACGAC ACTCTGCTTTGACGTGATGATCTGATAAGCTCTTTCAGCAAAAAAACATT ACATCTAACACTGCCTCTTGATTCTTTTGATTGGAAACAAAAGCGCAAGC AATTGGTTTCTAAagtgatttttggtgttttgatataattttgctttatt tcgGCTAATCACCACGTTCATATAAAATAATCNGCCTCTTGATTCTTTTG ATTGGAAACAAAAGCGCAAGCAACTGGTTTCTAAAGTaatttttggtgtt ttgatataattttgctttatttctaatatttctttttttatccaAAATCT AGATGATAATCATAGAGAGTACGTCAAAACTGAGCAGATCTTCTTACTGA GCCACATCTTTTAAAGCGAATACGTTTCGTGCGTAGTGTAATCACGATCT GTTTGGAGATTACCTCAAACCTAAACCCATTCGCTTTGAGCCTgcataca tttttgttttgcttttaacCTTCAATTCAATTANTTTCGTGCGTAGTGTA ATCACGATCTGTTTGGAGATTACCTCAAACCTAAACACATTCGCTTTGAG CCTgcatacatttttgttttgtttttaacctACAATTCAATTGTATAGCG TGTGGAAAAGATAAATCAGGGCATTATTTTCTTTAATATCAATAATTTAA AAAgcgaaaatgaaaataaaactcgAAGAAACAAAAggagaaaatgaatt tttataACTGTGACTCAAAATTCatattttcaactctttttttagGGTAG CGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGGCAACCTTG ATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAGCTTTTATT CCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCTGGATGTGG GTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTACCAACGACC CTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAAACCTTTCT GGCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagca agtgtctgtccctttatcaggctcgcattatgctaagcattctattgttc tcaaaacaatagagccattgtttagatactaaaaactgagcctgtatatg cttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTC CATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaa atcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTA ATAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAA TGATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattt atggatgagagcggtttttacgacactgtaattattgtctttgttttata agataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGA GTATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCA ATGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgata atatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAAT TCGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAAC AGTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAG TTGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAG TCTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTA ATAATATTTTCATACAatgtttatttgaaaatatNTGGTACCAACGACCC TAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAGACCTTTCTG GCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagcaa gtgtctgtccctttatcaggctcgcattatgctaagcattctattgttct caaaacaatagagccattgtttagatactaaaaactgagcctgtatatgc ttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTCC ATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaaa tcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTAA TAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAAT GATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattta tggatgagagcggtttttacgacactgtaattattgtctttgttttataa gataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGAG TATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCAA TGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgataa tatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAATT CGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAACA GTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAGT TGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAGT CTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTAA TAATATTTTCATACAatgtttatttgaaaatatgaaaaaaacttttcgtt TCTTAGTTTAAATTTGTCTATCATTAATTTTCAGCAGATACAAATCATGA GCACGTCCAATAACTTTCgcatctgaattttttttttgttattgtgCACC TTGAAACTATATATAAGTGTTCCACTTTTTCAGGACACacttatatattt tcttttggaCGGTAAGCGCTTCGAAAACTTCCCCAAGGTATCACTGTAAG GCGTTAAGGGCTTTACTataaattattatttatttcaGTTTGTATTTCAT GTATAATTCATCTCTTTCTATCTCTTAATaaagaacaaaattttgaatct AAAGACAATGTAATATTGAGTTCATTTTCCAAAGAAGCTTTTACTGTTTT TTCCCATTGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00072311TCONS_00072311Clytia hemisphaericatranscript
TCONS_00072312TCONS_00072312Clytia hemisphaericatranscript
TCONS_00072313TCONS_00072313Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00072311-proteinTCONS_00072311-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_76supercontigscaffold_76:102012..107272 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22 0.24 0.32 0.55 4.73 3.36 29.96 42.71 94.71 109.08 118.31 56.31 50.13 56.89 63.9 62.28 34.14 30.25 113.26 166.43 33.61 33.22 66.54 78.22 86.26 101.29 320.31 433.07 338.65 336.03