|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072311 ID=TCONS_00072311|Name=TCONS_00072311|organism=Clytia hemisphaerica|type=transcript|length=1344bp
GCTGAAGGTAGCGATTTACCGAGACGAACCAATCAACAAAACAATATAAA
AGCTGTGATGATTGATAGGTAAGTATAAATAGAGATAGAGTCTCGTAAGC
GAAAATCACTATCATTTCCTAGTATTGCTCAATGTCAATCGAAACAGTTT
TGTCATATATGTGCTGATAATATTATGCTTGCTGATTGCTGAAGGTAGCG
ATTTACCGAGACGGACCAATCAACGAAACGATATAAAAGCTGTGATGATT
GATATGTAAGTATAAATAGAGATAGAAAGTCTCGTAAGCGAAAATCATAA
TTATTTCGATTACGAGGAACTGAGTGACAAGACAACATTAATTTTGAGCA
ACAATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTT
CCAAGCACAAACACTGCGCGAGTTGAAATTCGTTGGAGGTTCAGTCGGAA
CAACATCCGTTTACAGCCTACCAAGTTGGAAAGCTGAAAATGCCTTTCTG
CAGGGTAGCGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGG
CAACCTTGATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAG
CTTTTATTCCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCT
GGATGTGGGTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTAC
CAACGACCCTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAG
ACCTTTCTGGCGATGGAATAAGCAATATCAACAGTTCACCAAAATATTGT
ACAGTTGATGAAAGCATGCGTGAATCATTCAGTTGTTTGGGAATCAGTGT
TTTGGACAGCGCATATACTGGTGCAAGTGAAGTCTCCATCAATGGGATCC
GAATGTGGGCTAGAGACTAGAATCAATCTGTAATAATATTTTCATACAat
gtttatttgaaaatatgaaaaaaacttttcgttTCTTAGTTTAAATTTGT
CTATCATTAATTTTCAGCAGATACAAATCATGAGCACGTCCAATAACTTT
CgcatctgaattttttttttgttattgtgCACCTTGAAACTATATATAAG
TGTTCCACTTTTTCAGGACACacttatatattttcttttggaCGGTAAGC
GCTTCGAAAACTTCCCCAAGGTATCACTGTAAGGCGTTAAGGGCTTTACT
ataaattattatttatttcaGTTTGTATTTCATGTATAATTCATCTCTTT
CTATCTCTTAATaaagaacaaaattttgaatctAAAGACAATGTAATATT
GAGTTCATTTTCCAAAGAAGCTTTTACTGTTTTTTCCCATTGAA Run BLAST on NCBI protein sequence of TCONS_00072311-protein >TCONS_00072311-protein ID=TCONS_00072311-protein|Name=TCONS_00072311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MVFKIILLCAVIGFSFQAQTLRELKFVGGSVGTTSVYSLPSWKAENAFLQ
GSDQVWHSGRNAQGTGNLDYAFPHLIWYKFRQAFIPARLSFKSRPTSNSG
CGSHGCAATKYQFIGTNDPKCDQYSKWTVVCEDLSGDGISNINSSPKYCT
VDESMRESFSCLGISVLDSAYTGASEVSINGIRMWARD Run BLAST on NCBI transcript from alignment at scaffold_76:102012..107272+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072311 ID=TCONS_00072311|Name=TCONS_00072311|organism=Clytia hemisphaerica|type=transcript|length=5261bp|location=Sequence derived from alignment at scaffold_76:102012..107272+ (Clytia hemisphaerica)
GCTGAAGGTAGCGATTTACCGAGACGAACCAATCAACAAAACAATATAAA
AGCTGTGATGATTGATAGGTAAGTATAAATAGAGATAGAGTCTCGTAAGC
GAAAATCACTATCATTTCCTAGTATTGCTCAATGTCAATCGAAACAGTTT
TGTCATATATGTGCTGATAATATTATGCTTGCTGATTGCTGAAGGTAGCG
ATTTACCGAGACGGACCAATCAACGAAACGATATAAAAGCTGTGATGATT
GATATGTAAGTATAAATAGAGATAGAAAGTCTCGTAAGCGAAAATCATAA
TTATTTCGATTACGAGGAACTGAGTGACAAGACAACATTAATTTTGAGCA
ACAATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTT
CCAAGGTAAATTGTATTGTGTTTTTGACTGCAAACGTGGTGTATATCAGC
TGGCTCAAATTTATTGGGAACTTGGTACCTCAGGAAAATGGGAGTTTTAA
TCtaaatttcaaagaattttaaagAGATATTGTGCTGTGAAATGGAATTT
AATTACACGACGATGGAggcttttttagaaataaatttgagaaaagcgtg
aaaaaaagaacaaactatataagaacattaggcttcgACATGGctgtaaa
atgttaagaaaaagttgagaacattttgagtctttgcggactctaaaaga
cacaatttcttagaaaaCCCAATAAAAATACTCATCATAAAAGGGTgaga
ttaagaacattttaagaaactgtttaggctcaaaactcaaaaagttactt
AATTAAGAAACTAAGAAAGTCCGAGGACTTCAAAAAATTAGTTgatgatc
ttataaaaaaatacgtgTAGTACCTGAAAAGGCCACGGGCTCTGCCGAAA
ATCTTTTGATAAGTGAGGTAAGGGTAAGGGTAccaggtttgcgaggtgac
gggtatgtccaagcaaaaattcagaaatcggCCCTTTGAGAAAAGACtga
atttcaaagtttttgtgACTCTTTGATGGactatttttacaatttttagc
tcaaaattaCCTGATTTAATGACTTTTTAAGGGTGTCGTCGATGTTTGAT
ATTATgtaatttttggacctattcAGAGGTTCAATTGctaaattttcgtt
tttgtacccctttgatgGACTTTCGAGCACGTACCAAGTATACCCACTTT
TCCAAGTATCTctcgggaaattttttttaagccGGTGTGTTTTTAGCCGT
TCTAATCTTAGCCATTCGATTAAGTTATTTGTAACGCCAACATGTTTTCT
ACAACATGGCTTATTGTAATCCATTTCTTTATAGCACAAACACTGCGCGA
GTTGAAATTCGTTGGAGGTTCAGTCGGAACAACATCCGTTTACAGCCTAC
CAAGTTGGAAAGCTGAAAATGCCTTTCTGCAGGTTTGTGATTAAAACCTT
AATTgtcaactacacgtttttttttattagaacaccttaaatttggctga
gcctggatgtgcttattttttagcaattttcagcctagaatgttcttaaa
tgcgttcttaatttttcagactactctaaatcgacaatatgatacaaaat
aaagagcactcaaatttggcaaaatttggacaatatttgactctcgactt
ttgaagatccacccctaaattcggtagaaaactgcttaaaaagaggaaaa
aattgtagtttcttgtcatttttttccaaactgaggctgggcatgttctt
aagatgttcttaatttttcgacgaatttcagcctatatgttcttataaac
taggttctaataaaaaaaaaacgtgtaggtttAATTCCCACCTAACTTCT
TTGTATAGATCAAACTCCTACATCCCTTTAAAGTAGCTCTGAAACGAATA
GgaaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACG
ACACTCTGCTTTGACGTGATGATCTGATAAGCTTTTTCNAAACGAATAGg
aaatttatatatttatatattcTTCTGACTTTTATAAAATACAACACGAC
ACTCTGCTTTGACGTGATGATCTGATAAGCTCTTTCAGCAAAAAAACATT
ACATCTAACACTGCCTCTTGATTCTTTTGATTGGAAACAAAAGCGCAAGC
AATTGGTTTCTAAagtgatttttggtgttttgatataattttgctttatt
tcgGCTAATCACCACGTTCATATAAAATAATCNGCCTCTTGATTCTTTTG
ATTGGAAACAAAAGCGCAAGCAACTGGTTTCTAAAGTaatttttggtgtt
ttgatataattttgctttatttctaatatttctttttttatccaAAATCT
AGATGATAATCATAGAGAGTACGTCAAAACTGAGCAGATCTTCTTACTGA
GCCACATCTTTTAAAGCGAATACGTTTCGTGCGTAGTGTAATCACGATCT
GTTTGGAGATTACCTCAAACCTAAACCCATTCGCTTTGAGCCTgcataca
tttttgttttgcttttaacCTTCAATTCAATTANTTTCGTGCGTAGTGTA
ATCACGATCTGTTTGGAGATTACCTCAAACCTAAACACATTCGCTTTGAG
CCTgcatacatttttgttttgtttttaacctACAATTCAATTGTATAGCG
TGTGGAAAAGATAAATCAGGGCATTATTTTCTTTAATATCAATAATTTAA
AAAgcgaaaatgaaaataaaactcgAAGAAACAAAAggagaaaatgaatt
tttataACTGTGACTCAAAATTCatattttcaactctttttttagGGTAG
CGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGGCAACCTTG
ATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAGCTTTTATT
CCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCTGGATGTGG
GTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTACCAACGACC
CTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAAACCTTTCT
GGCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagca
agtgtctgtccctttatcaggctcgcattatgctaagcattctattgttc
tcaaaacaatagagccattgtttagatactaaaaactgagcctgtatatg
cttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTC
CATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaa
atcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTA
ATAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAA
TGATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattt
atggatgagagcggtttttacgacactgtaattattgtctttgttttata
agataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGA
GTATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCA
ATGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgata
atatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAAT
TCGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAAC
AGTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAG
TTGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAG
TCTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTA
ATAATATTTTCATACAatgtttatttgaaaatatNTGGTACCAACGACCC
TAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAGACCTTTCTG
GCGATGGAATAAGGTACTGAACGGTTactgtaaatgttttttataagcaa
gtgtctgtccctttatcaggctcgcattatgctaagcattctattgttct
caaaacaatagagccattgtttagatactaaaaactgagcctgtatatgc
ttaaaaacgttatgcttataaaataaaaaacatgtatatgaAATGCCTCC
ATACTTAAAGGCCTTAGGATCAGattcgaaaatcaaaaatattttaaaaa
tcttacaAATATAATCTGAGAGGTTCCAGGCCGTTTGTTCACTTATTTAA
TAGGTTCATTGCCAACCAGTTAGGCTATCTGAAAGAAAGAATAAAGTAAT
GATAATTTGGGATTTttccataggcgtagcgagataccctgcaaaattta
tggatgagagcggtttttacgacactgtaattattgtctttgttttataa
gataatgaatatgtcataaacgtctgcacttcTTAATAAATCTTCCAGAG
TATATCTCGCTTTGCTTTTGTTTTCATATACATATTGCAGCTAATTTCAA
TGTACGTAGGATAAAAAAATGCGGCAAAGAACATATTCTTGGTATgataa
tatttttaacttttggaattgtttttgtatttgatttCTCTTGACAAATT
CGtgttaaaaattcttatttatcCTTTTCCATTGTTCAGCAATATCAACA
GTTCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAGT
TGTTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAGT
CTCCATCAATGGGATCCGAATGTGGGCTAGAGACTAGAATCAATCTGTAA
TAATATTTTCATACAatgtttatttgaaaatatgaaaaaaacttttcgtt
TCTTAGTTTAAATTTGTCTATCATTAATTTTCAGCAGATACAAATCATGA
GCACGTCCAATAACTTTCgcatctgaattttttttttgttattgtgCACC
TTGAAACTATATATAAGTGTTCCACTTTTTCAGGACACacttatatattt
tcttttggaCGGTAAGCGCTTCGAAAACTTCCCCAAGGTATCACTGTAAG
GCGTTAAGGGCTTTACTataaattattatttatttcaGTTTGTATTTCAT
GTATAATTCATCTCTTTCTATCTCTTAATaaagaacaaaattttgaatct
AAAGACAATGTAATATTGAGTTCATTTTCCAAAGAAGCTTTTACTGTTTT
TTCCCATTGAA Coding sequence (CDS) from alignment at scaffold_76:102012..107272+ >TCONS_00072311 ID=TCONS_00072311|Name=TCONS_00072311|organism=Clytia hemisphaerica|type=CDS|length=2835bp|location=Sequence derived from alignment at scaffold_76:102012..107272+ (Clytia hemisphaerica)
ATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTTCCA
AGCACAAACACTGCGCGAGTTGAAATTCGTTGGAGGTTCAGTCGGAACAA
CATCCGTTTACAGCCTACCAAGTTGGAAAGCTGAAAATGCCTTTCTGCAG
GGTAGCGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGGCAA
CCTTGATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAGCTT
TTATTCCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCTGGA
TGTGGGTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTACCAA
CGACCCTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAGACC
TTTCTGGCGATGGAATAAGCAATATCAACAGTTCACCAAAATATTGTACA
GTTGATGAAAGCATGCGTGAATCATTCAGTTGTTTGGGAATCAGTGTTTT
GGACAGCGCATATACTGGTGCAAGTGAAGTCTCCATCAATGGGATCCGAA
TGTGGGCTAGAGACTAGATGGTTTTCAAGATTATTTTACTGTGTGCTGTA
ATAGGTTTTTCTTTCCAAGCACAAACACTGCGCGAGTTGAAATTCGTTGG
AGGTTCAGTCGGAACAACATCCGTTTACAGCCTACCAAGTTGGAAAGCTG
AAAATGCCTTTCTGCAGGGTAGCGACCAAGTATGGCACAGTGGAAGAAAT
GCCCAAGGCACTGGCAACCTTGATTACGCTTTTCCTCACTTGATCTGGTA
CAAATTCCGACAAGCTTTTATTCCAGCACGTTTGTCTTTTAAGTCAAGAC
CTACATCGAATTCTGGATGTGGGTCACATGGTTGTGCTGCAACAAAGTAT
CAATTTATTGGTACCAACGACCCTAAATGTGATCAATATTCCAAATGGAC
TGTTGTATGTGAAGACCTTTCTGGCGATGGAATAAGCAATATCAACAGTT
CACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAGTTGT
TTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAGTCTC
CATCAATGGGATCCGAATGTGGGCTAGAGACTAGATGGTTTTCAAGATTA
TTTTACTGTGTGCTGTAATAGGTTTTTCTTTCCAAGCACAAACACTGCGC
GAGTTGAAATTCGTTGGAGGTTCAGTCGGAACAACATCCGTTTACAGCCT
ACCAAGTTGGAAAGCTGAAAATGCCTTTCTGCAGGGTAGCGACCAAGTAT
GGCACAGTGGAAGAAATGCCCAAGGCACTGGCAACCTTGATTACGCTTTT
CCTCACTTGATCTGGTACAAATTCCGACAAGCTTTTATTCCAGCACGTTT
GTCTTTTAAGTCAAGACCTACATCGAATTCTGGATGTGGGTCACATGGTT
GTGCTGCAACAAAGTATCAATTTATTGGTACCAACGACCCTAAATGTGAT
CAATATTCCAAATGGACTGTTGTATGTGAAGACCTTTCTGGCGATGGAAT
AAGCAATATCAACAGTTCACCAAAATATTGTACAGTTGATGAAAGCATGC
GTGAATCATTCAGTTGTTTGGGAATCAGTGTTTTGGACAGCGCATATACT
GGTGCAAGTGAAGTCTCCATCAATGGGATCCGAATGTGGGCTAGAGACTA
GATGGTTTTCAAGATTATTTTACTGTGTGCTGTAATAGGTTTTTCTTTCC
AAGCACAAACACTGCGCGAGTTGAAATTCGTTGGAGGTTCAGTCGGAACA
ACATCCGTTTACAGCCTACCAAGTTGGAAAGCTGAAAATGCCTTTCTGCA
GGGTAGCGACCAAGTATGGCACAGTGGAAGAAATGCCCAAGGCACTGGCA
ACCTTGATTACGCTTTTCCTCACTTGATCTGGTACAAATTCCGACAAGCT
TTTATTCCAGCACGTTTGTCTTTTAAGTCAAGACCTACATCGAATTCTGG
ATGTGGGTCACATGGTTGTGCTGCAACAAAGTATCAATTTATTGGTACCA
ACGACCCTAAATGTGATCAATATTCCAAATGGACTGTTGTATGTGAAGAC
CTTTCTGGCGATGGAATAAGCAATATCAACAGTTCACCAAAATATTGTAC
AGTTGATGAAAGCATGCGTGAATCATTCAGTTGTTTGGGAATCAGTGTTT
TGGACAGCGCATATACTGGTGCAAGTGAAGTCTCCATCAATGGGATCCGA
ATGTGGGCTAGAGACTAGATGGTTTTCAAGATTATTTTACTGTGTGCTGT
AATAGGTTTTTCTTTCCAAGCACAAACACTGCGCGAGTTGAAATTCGTTG
GAGGTTCAGTCGGAACAACATCCGTTTACAGCCTACCAAGTTGGAAAGCT
GAAAATGCCTTTCTGCAGGGTAGCGACCAAGTATGGCACAGTGGAAGAAA
TGCCCAAGGCACTGGCAACCTTGATTACGCTTTTCCTCACTTGATCTGGT
ACAAATTCCGACAAGCTTTTATTCCAGCACGTTTGTCTTTTAAGTCAAGA
CCTACATCGAATTCTGGATGTGGGTCACATGGTTGTGCTGCAACAAAGTA
TCAATTTATTGGTACCAACGACCCTAAATGTGATCAATATTCCAAATGGA
CTGTTGTATGTGAAGACCTTTCTGGCGATGGAATAAGCAATATCAACAGT
TCACCAAAATATTGTACAGTTGATGAAAGCATGCGTGAATCATTCAGTTG
TTTGGGAATCAGTGTTTTGGACAGCGCATATACTGGTGCAAGTGAAGTCT
CCATCAATGGGATCCGAATGTGGGCTAGAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072311-exon-scaffold_76-1491911889:102012..102416 | TCONS_00072311-exon-scaffold_76-1491911889:102012..102416 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1510915933:102012..102416 | TCONS_00072311-exon-scaffold_76-1510915933:102012..102416 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1575043694:102012..102416 | TCONS_00072311-exon-scaffold_76-1575043694:102012..102416 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1491911889:103346..103443 | TCONS_00072311-exon-scaffold_76-1491911889:103346..103443 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1510915933:103346..103443 | TCONS_00072311-exon-scaffold_76-1510915933:103346..103443 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1575043694:103346..103443 | TCONS_00072311-exon-scaffold_76-1575043694:103346..103443 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1491911889:104807..105047 | TCONS_00072311-exon-scaffold_76-1491911889:104807..105047 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1510915933:104807..105047 | TCONS_00072311-exon-scaffold_76-1510915933:104807..105047 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1575043694:104807..105047 | TCONS_00072311-exon-scaffold_76-1575043694:104807..105047 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1491911889:105997..106024 | TCONS_00072311-exon-scaffold_76-1491911889:105997..106024 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1510915933:105997..106024 | TCONS_00072311-exon-scaffold_76-1510915933:105997..106024 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1575043694:105997..106024 | TCONS_00072311-exon-scaffold_76-1575043694:105997..106024 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1491911889:106701..107272 | TCONS_00072311-exon-scaffold_76-1491911889:106701..107272 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1510915933:106701..107272 | TCONS_00072311-exon-scaffold_76-1510915933:106701..107272 | Clytia hemisphaerica | exon |
| TCONS_00072311-exon-scaffold_76-1575043694:106701..107272 | TCONS_00072311-exon-scaffold_76-1575043694:106701..107272 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_76 | supercontig | scaffold_76:102012..107272 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008979 | Galactose-bd-like |
Blast
The following BLAST results are available for this feature:
|
