XLOC_042908 (gene) - C. hemisphaerica

Overview
NameXLOC_042908
Unique NameXLOC_042908
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_49:955672..965143+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042908 ID=XLOC_042908|Name=XLOC_042908|organism=Clytia hemisphaerica|type=gene|length=9472bp|location=Sequence derived from alignment at scaffold_49:955672..965143+ (Clytia hemisphaerica)
ATTTCCCTAATAATTAATTTCaactttattatttttaattacGTCACAAC CAGATTCTGACCCCTTAAGGTATAGGTCATCAAAAACCGTTAGTGAATCT CTGAGATAATGGGTGCTATTGATCGCACAATTTGGGATTTGTGATTAAAA AAGAATCTAGACAGGGCCTACAGTAACTCACGCGAGCTGGAAATTTTCAG ATGATATGTAAATGTTAGATTGaaagtttcaagaaaaaaatgacttaTCC GACGAAACAATATGATTATCATTTCAGTGTAATTATAAAgaactaaaaga aaaagaaaatatatattatcaAGCAACAATATGGTGCTGGTATCTTTCCA ATCTCTCGCGAGGACATCCGTCCTCTTCACCAATAAAGCAAATGTAAGTA TGCTAGTCTAGTCCTTATTTTGTGATTCGCttttcgaacttctattattt gaatctttctataattcgaatttgtTTCCAGAAAccttcttaaaatattt tatctaatttgaatctctctataattcgaacggATAtgattccccgttcg agttcgaattagagagagtcaactgtacttTGTTTTCACTAGAAGTAATC ACTTATGATGATTTTAATCACCCCTATTTTACAAGGCGAGTTGTTCTTCT AGTAGCAATCTAGGGTCAATTTTCTCAACAGAAAGAGTTGTGATAGATTT AGATTCACTTTTAACCAAACACTATCTCAAATATCTTTATAGAGCACCAT CCTTATACGAAACATTGAGAAATGCTTCATTTGTGCTGACATTGCAAATT CCAAACGTTACAAGGCGAAATGGAATTCTAAATTCCCGAAAAATGATGGC ATGTCCCGGATGGAGAAACTTGCAGAAAAATTGAACCCACCGATGAGTGA TCGAGAGAAAAATGTTCCTTTACCTCCTGACATGGGTACTAAAGTGGATA GCACGAGTAAGTGAGAAAGGGTTTTATTTGGACGTCTTAGCCCTTGGTCC ACTTGAGGCTTTTTTATAGCCTGGATGGCGTGATTAGGTGGAAGGACTTC ACTGGACTCGGCTTCATCAACAATTATCAGAAAGCAAAGCCTCAAAAAAG ATTTAGTCTAATGACTTCTGGACTTGTGGGTATGGTGGCTGCCCTATCTT GCTATCTCATAATTTTGTCCCAGTTTAACCATAGTACTATTACACTAtga cgttttttatttttgtctccACAGATCAGATTTTCAGCAGTTACATTCCA GTGGAGAAGAAAAGTTCCATGGTTTCAAGACAAGTGAGTAACTTTGGGct tgttttagaaaatgaagTATTTTTCATTAATCATAGCTTAGATTACTATT TTTGATTGATCCACCAGGTCTACTAACAAATGTAAcgcaatacatgtttt ttttataagcaagtgtatgccgcttggtcaggctcgtgtatgcttaagtt ctcaaagtattcaggcatagtttatgcttattatatgcttaagaatcatg cttatgattcacctcgagccaagtttttagtgaaatttcagaaattttgt aaaaatttgttcagattttggggcagtggaatgtaggaaaccgtggaaag tctttttttttacttgacctctaccaaacctttttaaaccgataaaaatg acaacttgaaaaatatttcaggctgacatatatatgcttatgttatgttt aggaattctgcaaatctgagccttcatatgcttataagcgttatgcttat aaaaaaaacatgtactccTTGAATTTCAGGGTGTATCACAGAGGTGGGAA GCTTTCAAAGCTATGCTAATGTCCACCTATGGGTAAGCCAACATTGTCAT GTTTTTATCGACTAGAACGAAGTAAATTTCCATTGGATGTATTTTCCAAA TTAAACTGAGGTTTTTTTAGAAAGGTTCTGTAATCAATTTTGATCCGTAA GATGAACGGCTGTGCTATCTTGTTAATCCATTAAAAGACCAAATATCAAG AGAAAAGACACAATCTAAAGTTTGCGTTTATCGACCCAGTGGTATTAATA TTGAAAGTTTATCGTGGATTGGATcgcgagatttacgtttggttacgttt cgagagattcttctcccatcatcgggcaacGTGGAGGATGTTTTCTCCAC TATTTCCANTACATTTGGCTACGTTTCGGTAGATTCTTTTCCCACCATCG GACAATGCGGAGGATGTTTCCACTATTTGTACTAAGACCTTCTGATTACC CATAATAAGAAAAGGGACAAATCAATAGCCTGTTCTTATTGTCGCCGTCA TCTTATTCATAATAAGTTATAATATTTCTAGGGTAGCAATGATCAAACGA AAAGTCTCTTTCAAAGCAGTGGACTTTTCGAAATTTGCTCAACAGAAATA TATTGAAGTCAACGAAGCTctacagaaaaatgaaaagtaaGAAACCATTA ATCTATCCATTGCTTGATCCAGATGCATCAATTTGTTTTGTTCACTAAGC CTAGAGTAGAAAGTTGAAATTcggtatatattttttcttctctaatcact tcttttttggacctacctggaggtcctataaattaacctttgcgtccgtc cgtccgtctgttaccagcttttctcgagattggctcatcagttttttccg atttttctgatttttggcacaaaggaacaaaatagcaatgcctgaaatgt gtcattggattttttcgttttatatcttttttttttttattattatttat aagaattcccacgattaagcatggttcaattttaaatgaaactgattttg gtagccgaaactttcttaaaatcgccagaacagcctagaaccgccggaaa aacggttttcttgaattttgatTTATGAGGGGTCAGAACTTTTGATTTGC CAATTTGATTTTATCGTAGCACTTTTGCGCCATCCGAACTTTTATAACTT TAGCGCGCTGGAATGTTGAGTAAATTTTTGTGAAGTTGAGCCCAAATACG CAAACGTGTTAACAATGATAATGCACTGTGATATTTAGTGTTTTTGGTTT TCAATTGAACTAATTATTCTAGTATTCCTCAGAAATCGCCGGAAGAGCAA AAAATCACTAGGAAACCGTTCGCTCGTCCGTTCTTTTTTCACGATCTTTT CGATTATCACTTTAAATTACAGTCAactttccataactcgaacctcctcA AATCGATTATCTCTATAACGATTTTTCCTGTCTCTTGAGGAGATTTTCAG GCTATTTTGCCTCTCTAGAACTCAAATTTCTGTAACTCAGAGGATTACTG ATTATCCCCTTGGCGTTCCAGCACTCGACTATACTTCCCTACTTGGTCTA ACTTCAGGACGGTCCAATCAGCGTTCCggcttcttcttttttctttctga aCAATTCTCCGAAAAAAAACGATCTATTCATTTATTGCAGAACACGTGAC ATCGTGATGAAAGAAAACGCCACACTAATGATTGGGCGGGTAAGTCAAGT ATTTTGCCTTTGGTTCGATTGGTGCATAATACAGCACCCCCATTTCGTAG GCCCGATTAAACCCTCTGCATATTTGCAAAATTTGCTCTAAAATTTGTTC CTCAGTATAAAATACACTTGGCTGTAAAGACGGGGCTGTTGGAGTTTTGA CTTCAGCAACATATTTTCAATTCGTAGTAGTAGTAGATTATGATAATTgt ggaaagaaaaattgagGTCGATTTTATTTGTGTCATATCATTAccttaaa ataattataaattttacaagataaataagaaaattataattgtGATTTTT GCCGTTGCCGAGAAGTTGTCCAATGATCGGTAATCTTTCTGTGCTACGAG TTACGCTTTCACGTATTTACCGCACGCTGGTTTTGTGCAATTCCATTTTC CACATTTACGAATGACAATGAACTTCAAACATCTTCGGGAACATTGGCGT GAACAAAAGCGGCAATACTTTTGGTTGAAATATTTCTTGTAGTAGACTTT ACGCCAGCAAGTTCTGCTCACTCTTTTGAAGTAGAATTTCCAGACGAAGA TACGGCGTATGACGCATTGTCGGTATCTATGGAAACGCTTTTGGGTTTCC ACCTTGAGCACTTTGGCCTTtggatctgtaaaataaattTAGATAAACTA TTGAAGTGTGGGACTAGAATAGGATAAAATATTTACCTTGGCTGAGAGTT ATTGTTGCCTTTTGCTCTAAAACCAAAATCTCGCtttaatattcttataa aaagcgtgtatttagaTTGGCAAGAGTGAAGTATTTTATATTATGTAAAG AATGAGGATTGGAATTTCCAAATGGAGTTTCCAATTTGTGACTGTTTGTT ATAGGTAATAAAGATACTGCAATTTAACCCAAATGTTAGAGGTAAAGTTG TGGGAGAGTGGCTAATTTGTTGGGCTAGTGACAAAATTTTCCTTCGTTTT CCCGGTAAAGTACCTTGTTCTTCTTCATCCTTTAATAATTCTTCATCGTT TTGTGGCTCGTCTTTTTCACTCTCTGCTTCTGTTTCTTCTTGCCCGTCCG TCTCATCTTCAGTTTTACTCTCATCTATCTCATCCGACTCTTCTGGTTCG TCCGATTCGGGTTCATCGGATTCTTTTTCGGGTTCATCGGATTCTTTTTC GGGTTCATCGGATTTATTTTCAGGTTCGTTTTCCAATTCATCTGATTCTT TTTCAGATTCATCGGATTCATTTTCAGATTCATCGGATTCATTTTCGGAT TCATCGGATTCATTTTCGGATTCATTTTCGGATTCATCGGATTCATTTTC GGATTCATCGGATTCATTTTCGGATTCATCGGATTCTTTTTCAGATTCAT CGGATTCGATGTCTGATCCGTTTTGTGATTCATCTTCGTCGGATAGATTT TCGGGTTCACTATCGGGTTCTAAAGATTCATCATCGGATTCATCGGAATC AGTTTCGAGTTCATCCTCTTTCATGTCTTGTAAATCGGTTTCTTCATCTT GgcgaaaatcttcattttctaattCTTTGGGTTCATCGTCCAATGAATTt tcacctgaaaaaaaaaacaaataatttttaattttgaaatacctACCTCG TTgttcgaatttttttaaagctGGTAGGGTTGAAGAgcttaacctttcaa agccgctaacttttttgaaaaaggccaaaaatttcatcatttttttctgt aaatttattttttcaaaggcaatttctcgaccaggacaaacgattcaggt atcaactttgccatcgttggaaagctctttctctcagctacaaaaaatag cagattttttttctctgaatctcaagtggtcaggagttatgaccaaaaga ctgtatcggtaaaatgaccttttctaaacgtatatatacgtcttTCGACT CCTAAGGGTTAATACAAATGCGGGAACATTGATTCATTTTGTTGCTTTCc attaaaaaatgttcaaaattgaATCTTGGACAAGTTAACTCTACTAAAAG TTCGGAATAGTTACTGTAAGGTTTAGTTAAAATCTGTAATCAAAACTATT TTTACTACGGAATATAACACTACACACAAAAATGATGTTCGAATTACACT TTTttgtttaagaaatattttaaaagaacaacgaggctcaaaatcgccat aaaataagaacatactaagaaCAATGATCAGCctggaattactcaatttc aagcagtTTATGTTATTTATGTAATAGGCAATTTAGGTCAAAgctagtaa aaattgggtaaaaagcttaaaatacctcaattccaccctataaataagaa catgacaagaacaatttgaggctcaaagtgccaaaaagataagaacagtc gagtgtcagcaaaattttactggttcttctAAATAAAAGTATACCCAAAT TAGATCTTTTTACTTACAATTAATTGTGAATACCAAGAAGGCTAACAAGA AAATCCCTTTCCAAATCTTCATTCTGATTTCGTCTTTGAACGTTCAACCA TTAAGATTGAATGTCTTTCTCACTTTCAGATTTGCATTTTTATAGTGTTT TTTAAGTGTTGTAAACCCACTAAGTGCTTCATGGTTGTCGCATATTTTTA ATAGACAGCATGATGTTTAATGATTTTATGATGCATGGTAGAAACTGTCT CATTTTGggattataattttctcgaaagccacatggaaaaaatgaaaaag tttaattatTCGCTTGATGATTTCCTTTGCTACTTATAAGCATCATTCTA TAAAGTATAATTGTAGATTTCTCAGGTCTTTTGCTCACATACAAGACACT TATCAAGACAAGCACAGGTTTTTGAGGACTGAATTATCAGTCTAGTAACA ACACTGTTGGTTTTTAGGCTGATAAGAATGTTTTTTGCTAAAGTTTTAGC ATTCACTTAATTTATTTTGGATTTATAAGAAAATCTCCTAAGAAGTATCA TGTTCTTTCAAATAATTACTATGATTAATTACACTTAAAGTATAACCAAG GCTCAATTAGAGATAATTGGGGTAGAAAACGTCCATGCTTGTGGGTTCAT TTTCTACAATTGTTATTTATTCAGAAACTGTTTCGACAGTATGCTTTTTC TTCTCCATTTGTATTTTCATTCGTATACTTAACTTCCTCATATGCTTGCT TTATTGCaaatacagttgatgctctctaattcgacgttctactattagat aggctctcttattcgatgaaatttaaagtccccgtcaacaagaaactctc ttaaacgacgctcccttattcgataagctcccttattcgataagctccct tattcgataagctcccttattcgatgaaaatccaattccccttgaagatc gaattagagagcgtaaaCTGTAATAATACCAAAGATGGCTGGAGAATGAT ATCCCTTTATCAGACTTTAAAGTGAATAGTAGATATGTATAAAGAGTTAT TTAACCCTaatatccccaggggggggggNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN Ncccttattcaatgaaaatccaattccccttgaagatcgaattaaagaga gcgTAAACTGTAATAATACCAAAGATGGCCGGATTAAGATATCCCTTTAT CAGACTTTAAAGTGAATAGTAGATAATATGTAAAAAGAGttatttaaccc tattagcctcaggggggggtagaatcgtCCACGCTGGTGTTATTTTGTGC ATatctcgaaaaaaaaaattgtgataaCGTCATCGCTTTTTGAATGcctt caacaaattttttttcctcccTGGAAGTTTGTGTCATGATAGATCTGTAC CAATTGTTATGGCCGAAGCTTTTCTAGATCTCCCCTGGAGCCGCAAAAAC CAAAAGAGCTCGGGGTTAATAgggttaaaaacaaaaaacctttTACCTTT GAGTCTACAGCACTGTGGTTGAGTTGTTTACCTTTTCGTTTGTTAGCAAA TACATGTTTATATACATACAAGGGATTCTTCGGAATTTCTGactgttttt gaattttattgtaTATTTTGTGTATCTTTGACAAttccttcttttctttt caggCTTTGAAAACGCAATACCAGAACCCTGGTAAGAGGTTGGAATGGAA GTTTATTCAAGAAGTGNCAGGCTTTGAAAACGCAATACCAGAACCCCGGT AAGACGTTGGAATGGAAGTTTATTCAAGAAGTGGACCGGCCTCGTGTCGT GCACGCTCGTGTTGCTTCGGTCTTCGATAAAGAGAATTTGTACGCTCAAG TCACCGTCCGTATGCACACTCAACAAGTAAGTACCAAGtactcgtttttt ataagaacaagctatataagaacacaaggcttcgatggccaaaatatttt aataataaGAGCTAAGTACATTTTAAGGCGTtttggactctaaaacatcc gaATTCTTAGaataatggacaaaaatactcacaaaatggtgaaaataaga acatgttgagaacttttttaggctcaaaattcaaaaacctAGGAACATCC Gaatgcttcaaaaaatttggatatttttataaaaaacatgtactaaaata atttaaacatATTTATTGTGACACGAATTTTATCGAATCATCCATAGGAG CAATTAAAGTAGAGCACTCGGCTATGGTGCGTAATTTTGTATAATTAACC CCATAATACCATCATACTAAAGACATCGAAAAATTGTATTTCACGGTTTT CCCTATTTTGGacacatttcttttatttttctagagatttttcaaacttt ttggcAAAATCTCGAGTGATTTCAGCACAGCTCCTTGAAATGGTCTTTGT TAGCTTTTTATGATGGTCATGTAATACNAGTTCTTTGAAAGAAACGGGCA GCGTTAACTTTTATGATGGTTCTACGATGTCATGAAatactttttccttt ttcagatTCTGGCGATAAAAGATCGATACAATCGAACAGTTATGGGCGAC TCGAAGAAAGGGAGGAAGGTTATCGATTACGTTGTTTTCGAAAGACATTT AGCTGACCCTTACGGTCGATGGAGAATCTGTGGCAAGTTGAACCATCCAA AACCAGAAAATCAAAAAGCGCTGACAacgtcttcttcttcttcagctCAA AATACTGCAGCTACTTCTTAAACTTATGACCAAGATAGGACAGACTTAAC GTTATTGACAATGGGCTGTTACATAAAAAAACCATACAttggggtggacg aaccttttcaagtcaaaaagaaattgtGGATAACCCCtggtaaaatgtca aaatttgcaaaaataccccttggaaaaattcttttcataccttaaagcga gggtggacgaactaaaatcagtcttttaacccctggaaattttggaatga ttttttacccccttggaaattttggaatgattttttacccccttggaaaa atgaaaatacacccCTGGAATTTTTTCTCtgaccccctgtatggatataa aatggaatgacccaATCGCTTGTATGGAATTTCTAGTGTAAAAATCAAAA CGGAAAACTTTTATGAGGTTTGTCCGTATGTGATTGGCtttgttcatttt ttcagaATCGCAATAATATCTAATGTATTTTCCacgagaaaattttttat ctctcTTCTATCTCTGACTTTTTAGAAAGTTAAGGAAAACGGTCCTATTT AACACATGAATGAGtatttttttcgtgtttttcgGAAAAATTGTATACTT TGAATCTAAAAATTGACGCAAGATCTGTGAGAGGTATACTTTTTTGCATT CAGAAAAGTTATGAATGATTTACACCCTAATAGGATTTTTACTTCAATGT GTGAGATAAGCGTATACAATAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068821TCONS_00068821Clytia hemisphaericatranscript
TCONS_00068822TCONS_00068822Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068822-proteinTCONS_00068822-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:955672..965143 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
MRPL4539S ribosomal protein L45, mitochondrial isoform 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.89 54.78 22.83 19.32 35.85 28.65 21.03 26.19 22.47 21.74 17.16 18.56 17.52 18.96 18.59 18.44 37.91 32.9 6.96 8.19 22.44 24.75 37.42 33.88 25.06 26.43 10.61 8.58 18.29 18.71