XLOC_042090 (gene) - C. hemisphaerica

Overview
NameXLOC_042090
Unique NameXLOC_042090
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_469:531770..535952+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042090 ID=XLOC_042090|Name=XLOC_042090|organism=Clytia hemisphaerica|type=gene|length=4183bp|location=Sequence derived from alignment at scaffold_469:531770..535952+ (Clytia hemisphaerica)
GATGGATGTTAAAGTAGGCTGCTgatcaaaattgtttttatagaCCTTGA
ATGATGATCATACCTCTCTATTATAGAAATATTTATTTCagttattttaa
aaatgaattcaaaatatcatcaaaaataCTTCGATAAAGGTATTGAATCT
CTTTCAAGttgataaaattttctcttttgcatttcttttaatttgattaT
TCTAAACTGCCTGGCTTGTACTCGATATCGAAACAATATTTATAGGCCTT
ATAGTTTATTCACAGATTAAAACCAAGAAATCCAAATTTAGCTTAACGTA
CTCTCTTAGTTttacattttgattttattaaacCTTTGCTCATCCTTGAA
TTCTATAAACCTTCTATAAACCTCTGAGCCATTTTACTTGTGATATCAAG
TTCCTCATAAATCTTTCTCATACGTTTTTCTCGGAGctcttcaatatttt
cattcctGTTAATAGTTGGTATTGTACACTGTGGTGATAAGAAGTCCAAA
CAACTGGTGGATCGTTNGTTGGTATTGTACACTGTGGTGATAAGAAGTCC
AAGCAACTGGTGGATCGTTTGATGAAGAATATCGCACAAAAAGATTATCT
CAACGAGACAACGTTTACCAgcaaagattttcataccagcAACAATGTCC
CGTTGTTAGTCAGCATGACTCTGGCAACTTTCAAAGAATCTAGACTACCC
TTACTAGTGATTCTTACTAAAGACTTTTTCCACAAGATCTGGACAGATCA
ATTGAAGATTGGAATTCAACAAATGTTGCTTGGATATTCAAGTCATTTTT
GTTTACATATCTGGATGGATGACTTGGACAGTACTGAGGTCAGGAAGTGG
AGTACCGGCCTTCTCAGAAACGATTCTTCCTTCAGAAGAGTCAAGTACCA
AGACTTGCAATATACTactgataaagaactaaaagaACAGATCATTGCTT
TGATTAGaggtattcaattttttttttaagaggaCTTCATCATTTTTCTA
AGTGGAATATTTCAGGCTTGGACAAAGGCAAAATCAAACTTTTATTATAA
CTCATGGAGATTCctaaaaacaagaaatttcCGCAGGAAGAAACATTCGC
TGCTTTCACgaaattgcaaaagtttattACGCGAGAGATTCTTTTGACAG
ACTGATTCGAGAATAGTTAAAGTTTTCGTGTTTGTGAAAAACTCCTTCTC
TTAGAATCTTACCTAggccatgaaattttcttaaaagcaaCTGAAATCGT
ATGGGAGTTTTTTCtaggaaaaaattttgaaaaggacTATTCTTACAATG
GATTTGAATAGGTTGATTAAAAAAACTCGTACAAAGCAATCCTCTTTTGT
CAGGTAATCACCATTTTTTCTGGCAATTAAGTTCGGTAAGTTTTGAGAAA
TGTTGTGAAAATCATTActttgaagtcgaaaatttcacCTAAAGTTTATa
ctgcatgggaaaaacaagaagtagagatggaagctaatctgaaatctact
ttacattgagccttgatgaaacaattttataagaacaacgaggctcaaaa
tcgataaaaaagttaaccaatttaagaacaatggttgtttaattctttta
agaactaataaccgaaGGCGGTTATAGACGGTGATatcgtctatcaagag
ttattaatttgattcttataaagtatatgcttataagaaaaataaatatg
ctcatattgtgtgccatcccttgtttactttataagaactaataaccgaa
gtgtatatcaccgtctatcaagagttattgatttgattcttataaagtat
atgcttatgagaaaaatgaatatgctcatattgtgcgccatcccttgttt
acttcgtaagaactaattaccgaaaggtatatcaccgtctatcaagaatt
attgatttgattcttataaagtatacgcttataagaaaaataaatatgct
tatattgtgcgccatcccttgtttactttgtaaaaactaattcccgaagg
gtatatcatcgtctatcgagagttattgatttgattcttataaagtatac
gcttataagaaaataaagaaaaagactaaagacacaaagatatatgacgt
aatctaaagaaaacccgcgaaaatcgtccgtggttatacgagcgtgtaat
ttgtaaatcaattttagtgagttcgtccaccgcatcgagtactttcgttt
tctaattttttttcctcaccgccgccgccgcagaatgctgattgtaatac
tttcgttaaggcgaaattaaaaaaCGATCTTATAAAACTAACTGCTGAAA
ACTACACGAGTAGTGCATAAATCTGCATAAATTCATTTAGAGATATTTTC
GTGACAAtaagaagacaatggatctctcttgggagcaataAGAGAGCTTA
ATCCATCTATTCCAATCCGATAATTCGTGAAAGTTAGTCACCGCGAATTG
cagaaatttcgcgaatttctccATTCGTTTCATCTCCTTAAGTATTGAAT
TTTCTATATGATCTTTACTTCATTTTCCTATAATTATTTTAAGTAAATGT
CCCCGAAAATTTTGTCTCCAGAAATACTATGTGTCCCTTTTTCAATCATA
ATTTGataattcatcattttttcaaGACAATACAGATAGAGAAGCaaagt
atcgaaattattcagTACAAGACCAAGACGCATTGAACTTCACCGATTTA
GCGTTGAAATCATTATCCATCAAATCAAAGGACACAGCAGAGGGCTCACC
ACCGACAAGCATAACATCTGTTCCTTCGTCCTCAAGcaagaaacgaaaga
aaaagaagaaccaATCTGCCAACCAGTATTTAAGAGGAGCGGCTGCATTC
CCCAAAGCGAAAGTACCAAAAGAGACAACTCGATTGAGGGATTTATCACT
GGATCAACGAGACAGAATAACGACCTTACTGGATGTTGGGTACGGTGCCA
ACTGGAAACAAATTGGTCATTTCTATCAACTAACACCCGCTGAATTCCGT
GTCATTGAAACGGCGGGCCATGCTGGTCAACGACCGGCTGATTGTTTGTT
GAGATTGTTGTTGGCGAAAATGCCTGATTTGAGTTTGCAGGATTTAAAGG
AGAAATGTCAGCGAATTTTAAGGAGGGATGTTATCGAAATCATCGATGAA
TTGATGGGGAGCTAGAGGTCGTTATTTCGAAAGCTTTGTAAAGCGTTTAA
AAGAAGTCATTACTGAGGAATTGGGAGGATTCAAAATGACAGGCAGTTTG
TGGAGGTACCTGTGTTTGAGATGAGGAGGCGTGCGAGACGCAGAAGACAG
ACACCTCTAAAGTTTCTGGATGACTTGCTTTAAACGTCCAAATCAGTATG
TAACCAAGATAACTGTGCGGAATAAAAGAATATTCTGCTAAGTCAGCAGA
AATGTAGTCGAGTCTGTCAAGAGCTGTGGTagaaaggcaaaatttttatt
tctcttGAAATATTTGATACAAACACGAGGTTCGAAATCTAAAATCTAAT
ATCAAACGAACTATAGTATATATAATTATATTAagagatttttaattttt
tatagcAATGTAATATTTAatgtaaaggcttggggacacgagaagttttt
ttcgcgttggtgcaatgcaatatGTTCCATCCCAACaccacaagaaaaaa
agtgcgtgtcccatagtttcttttattgtttcatgggacaaaaagtgagg
gaaatacccaaaagacattgattttgtccctgggacaatggagcaaaata
ttattcaaatcaattttactccattgtcccagggacaaaagtgagttgca
ttgcaccaacatgaaaaaaacttctcgggTCCCCAAGCCTTTTATAAAGG
AAGGCCTTATAATAATTTTAATGAAGCACGTATTCTTCCTCTTAGTTACC
GTATTCAGCCTAGCTGTATAAACAAACTTActggaaatttattttgataa
aagttttgacAGATCGCCTACTTTGTGTGTACGACCTTTATGATTTGTCT
CTCCTTTGTCATTTTAGTATGTAACAGATGTTAGGGTTGACCCACCAAAC
TCTATAACAACCTTGTTTCACAGCCCAgaggaactttttcccacagtggg
gaaTGTTCTAAGCTCTAAAAATTTGGTCCAAAGGATGGTccaattagttt
ttttattgtcaatttccagaggggggggggggN
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067356TCONS_00067356Clytia hemisphaericatranscript
TCONS_00067357TCONS_00067357Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067356-proteinTCONS_00067356-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_469supercontigscaffold_469:531770..535952 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.13	3.16	2.49	1.86	17.62	11.98	19.26	23.03	9.15	13.01	12.77	7.09	19.08	16.47	10.94	13.69	11.7	11.07	16.37	19.42	8.35	8.14	6.27	9.15	15.17	26.83	15.51	14.95	8.85	7.62