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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067356 ID=TCONS_00067356|Name=TCONS_00067356|organism=Clytia hemisphaerica|type=transcript|length=2137bp
GATGGATGTTAAAGTAGGCTGCTgatcaaaattgtttttatagaCCTTGA
ATGATGATCATACCTCTCTATTATAGAAATATTTATTTCagttattttaa
aaatgaattcaaaatatcatcaaaaataCTTCGATAAAGTTGGTATTGTA
CACTGTGGTGATAAGAAGTCCAAGCAACTGGTGGATCGTTTGATGAAGAA
TATCGCACAAAAAGATTATCTCAACGAGACAACGTTTACCAgcaaagatt
ttcataccagcAACAATGTCCCGTTGTTAGTCAGCATGACTCTGGCAACT
TTCAAAGAATCTAGACTACCCTTACTAGTGATTCTTACTAAAGACTTTTT
CCACAAGATCTGGACAGATCAATTGAAGATTGGAATTCAACAAATGTTGC
TTGGATATTCAAGTCATTTTTGTTTACATATCTGGATGGATGACTTGGAC
AGTACTGAGGTCAGGAAGTGGAGTACCGGCCTTCTCAGAAACGATTCTTC
CTTCAGAAGAGTCAAGTACCAAGACTTGCAATATACTactgataaagaac
taaaagaACAGATCATTGCTTTGATTAGagACAATACAGATAGAGAAGCa
aagtatcgaaattattcagTACAAGACCAAGACGCATTGAACTTCACCGA
TTTAGCGTTGAAATCATTATCCATCAAATCAAAGGACACAGCAGAGGGCT
CACCACCGACAAGCATAACATCTGTTCCTTCGTCCTCAAGcaagaaacga
aagaaaaagaagaaccaATCTGCCAACCAGTATTTAAGAGGAGCGGCTGC
ATTCCCCAAAGCGAAAGTACCAAAAGAGACAACTCGATTGAGGGATTTAT
CACTGGATCAACGAGACAGAATAACGACCTTACTGGATGTTGGGTACGGT
GCCAACTGGAAACAAATTGGTCATTTCTATCAACTAACACCCGCTGAATT
CCGTGTCATTGAAACGGCGGGCCATGCTGGTCAACGACCGGCTGATTGTT
TGTTGAGATTGTTGTTGGCGAAAATGCCTGATTTGAGTTTGCAGGATTTA
AAGGAGAAATGTCAGCGAATTTTAAGGAGGGATGTTATCGAAATCATCGA
TGAATTGATGGGGAGCTAGAGGTCGTTATTTCGAAAGCTTTGTAAAGCGT
TTAAAAGAAGTCATTACTGAGGAATTGGGAGGATTCAAAATGACAGGCAG
TTTGTGGAGGTACCTGTGTTTGAGATGAGGAGGCGTGCGAGACGCAGAAG
ACAGACACCTCTAAAGTTTCTGGATGACTTGCTTTAAACGTCCAAATCAG
TATGTAACCAAGATAACTGTGCGGAATAAAAGAATATTCTGCTAAGTCAG
CAGAAATGTAGTCGAGTCTGTCAAGAGCTGTGGTagaaaggcaaaatttt
tatttctcttGAAATATTTGATACAAACACGAGGTTCGAAATCTAAAATC
TAATATCAAACGAACTATAGTATATATAATTATATTAagagatttttaat
tttttatagcAATGTAATATTTAatgtaaaggcttggggacacgagaagt
ttttttcgcgttggtgcaatgcaatatGTTCCATCCCAACaccacaagaa
aaaaagtgcgtgtcccatagtttcttttattgtttcatgggacaaaaagt
gagggaaatacccaaaagacattgattttgtccctgggacaatggagcaa
aatattattcaaatcaattttactccattgtcccagggacaaaagtgagt
tgcattgcaccaacatgaaaaaaacttctcgggTCCCCAAGCCTTTTATA
AAGGAAGGCCTTATAATAATTTTAATGAAGCACGTATTCTTCCTCTTAGT
TACCGTATTCAGCCTAGCTGTATAAACAAACTTActggaaatttattttg
ataaaagttttgacAGATCGCCTACTTTGTGTGTACGACCTTTATGATTT
GTCTCTCCTTTGTCATTTTAGTATGTAACAGATGTTAGGGTTGACCCACC
AAACTCTATAACAACCTTGTTTCACAGCCCAgaggaactttttcccacag
tggggaaTGTTCTAAGCTCTAAAAATTTGGTCCAAAGGATGGTccaatta
gtttttttattgtcaatttccagaggggggggggggN Run BLAST on NCBI protein sequence of TCONS_00067356-protein >TCONS_00067356-protein ID=TCONS_00067356-protein|Name=TCONS_00067356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=338bp
MNSKYHQKYFDKVGIVHCGDKKSKQLVDRLMKNIAQKDYLNETTFTSKDF
HTSNNVPLLVSMTLATFKESRLPLLVILTKDFFHKIWTDQLKIGIQQMLL
GYSSHFCLHIWMDDLDSTEVRKWSTGLLRNDSSFRRVKYQDLQYTTDKEL
KEQIIALIRDNTDREAKYRNYSVQDQDALNFTDLALKSLSIKSKDTAEGS
PPTSITSVPSSSSKKRKKKKNQSANQYLRGAAAFPKAKVPKETTRLRDLS
LDQRDRITTLLDVGYGANWKQIGHFYQLTPAEFRVIETAGHAGQRPADCL
LRLLLAKMPDLSLQDLKEKCQRILRRDVIEIIDELMGS Run BLAST on NCBI transcript from alignment at scaffold_469:531770..535952+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067356 ID=TCONS_00067356|Name=TCONS_00067356|organism=Clytia hemisphaerica|type=transcript|length=4183bp|location=Sequence derived from alignment at scaffold_469:531770..535952+ (Clytia hemisphaerica)
GATGGATGTTAAAGTAGGCTGCTgatcaaaattgtttttatagaCCTTGA
ATGATGATCATACCTCTCTATTATAGAAATATTTATTTCagttattttaa
aaatgaattcaaaatatcatcaaaaataCTTCGATAAAGGTATTGAATCT
CTTTCAAGttgataaaattttctcttttgcatttcttttaatttgattaT
TCTAAACTGCCTGGCTTGTACTCGATATCGAAACAATATTTATAGGCCTT
ATAGTTTATTCACAGATTAAAACCAAGAAATCCAAATTTAGCTTAACGTA
CTCTCTTAGTTttacattttgattttattaaacCTTTGCTCATCCTTGAA
TTCTATAAACCTTCTATAAACCTCTGAGCCATTTTACTTGTGATATCAAG
TTCCTCATAAATCTTTCTCATACGTTTTTCTCGGAGctcttcaatatttt
cattcctGTTAATAGTTGGTATTGTACACTGTGGTGATAAGAAGTCCAAA
CAACTGGTGGATCGTTNGTTGGTATTGTACACTGTGGTGATAAGAAGTCC
AAGCAACTGGTGGATCGTTTGATGAAGAATATCGCACAAAAAGATTATCT
CAACGAGACAACGTTTACCAgcaaagattttcataccagcAACAATGTCC
CGTTGTTAGTCAGCATGACTCTGGCAACTTTCAAAGAATCTAGACTACCC
TTACTAGTGATTCTTACTAAAGACTTTTTCCACAAGATCTGGACAGATCA
ATTGAAGATTGGAATTCAACAAATGTTGCTTGGATATTCAAGTCATTTTT
GTTTACATATCTGGATGGATGACTTGGACAGTACTGAGGTCAGGAAGTGG
AGTACCGGCCTTCTCAGAAACGATTCTTCCTTCAGAAGAGTCAAGTACCA
AGACTTGCAATATACTactgataaagaactaaaagaACAGATCATTGCTT
TGATTAGaggtattcaattttttttttaagaggaCTTCATCATTTTTCTA
AGTGGAATATTTCAGGCTTGGACAAAGGCAAAATCAAACTTTTATTATAA
CTCATGGAGATTCctaaaaacaagaaatttcCGCAGGAAGAAACATTCGC
TGCTTTCACgaaattgcaaaagtttattACGCGAGAGATTCTTTTGACAG
ACTGATTCGAGAATAGTTAAAGTTTTCGTGTTTGTGAAAAACTCCTTCTC
TTAGAATCTTACCTAggccatgaaattttcttaaaagcaaCTGAAATCGT
ATGGGAGTTTTTTCtaggaaaaaattttgaaaaggacTATTCTTACAATG
GATTTGAATAGGTTGATTAAAAAAACTCGTACAAAGCAATCCTCTTTTGT
CAGGTAATCACCATTTTTTCTGGCAATTAAGTTCGGTAAGTTTTGAGAAA
TGTTGTGAAAATCATTActttgaagtcgaaaatttcacCTAAAGTTTATa
ctgcatgggaaaaacaagaagtagagatggaagctaatctgaaatctact
ttacattgagccttgatgaaacaattttataagaacaacgaggctcaaaa
tcgataaaaaagttaaccaatttaagaacaatggttgtttaattctttta
agaactaataaccgaaGGCGGTTATAGACGGTGATatcgtctatcaagag
ttattaatttgattcttataaagtatatgcttataagaaaaataaatatg
ctcatattgtgtgccatcccttgtttactttataagaactaataaccgaa
gtgtatatcaccgtctatcaagagttattgatttgattcttataaagtat
atgcttatgagaaaaatgaatatgctcatattgtgcgccatcccttgttt
acttcgtaagaactaattaccgaaaggtatatcaccgtctatcaagaatt
attgatttgattcttataaagtatacgcttataagaaaaataaatatgct
tatattgtgcgccatcccttgtttactttgtaaaaactaattcccgaagg
gtatatcatcgtctatcgagagttattgatttgattcttataaagtatac
gcttataagaaaataaagaaaaagactaaagacacaaagatatatgacgt
aatctaaagaaaacccgcgaaaatcgtccgtggttatacgagcgtgtaat
ttgtaaatcaattttagtgagttcgtccaccgcatcgagtactttcgttt
tctaattttttttcctcaccgccgccgccgcagaatgctgattgtaatac
tttcgttaaggcgaaattaaaaaaCGATCTTATAAAACTAACTGCTGAAA
ACTACACGAGTAGTGCATAAATCTGCATAAATTCATTTAGAGATATTTTC
GTGACAAtaagaagacaatggatctctcttgggagcaataAGAGAGCTTA
ATCCATCTATTCCAATCCGATAATTCGTGAAAGTTAGTCACCGCGAATTG
cagaaatttcgcgaatttctccATTCGTTTCATCTCCTTAAGTATTGAAT
TTTCTATATGATCTTTACTTCATTTTCCTATAATTATTTTAAGTAAATGT
CCCCGAAAATTTTGTCTCCAGAAATACTATGTGTCCCTTTTTCAATCATA
ATTTGataattcatcattttttcaaGACAATACAGATAGAGAAGCaaagt
atcgaaattattcagTACAAGACCAAGACGCATTGAACTTCACCGATTTA
GCGTTGAAATCATTATCCATCAAATCAAAGGACACAGCAGAGGGCTCACC
ACCGACAAGCATAACATCTGTTCCTTCGTCCTCAAGcaagaaacgaaaga
aaaagaagaaccaATCTGCCAACCAGTATTTAAGAGGAGCGGCTGCATTC
CCCAAAGCGAAAGTACCAAAAGAGACAACTCGATTGAGGGATTTATCACT
GGATCAACGAGACAGAATAACGACCTTACTGGATGTTGGGTACGGTGCCA
ACTGGAAACAAATTGGTCATTTCTATCAACTAACACCCGCTGAATTCCGT
GTCATTGAAACGGCGGGCCATGCTGGTCAACGACCGGCTGATTGTTTGTT
GAGATTGTTGTTGGCGAAAATGCCTGATTTGAGTTTGCAGGATTTAAAGG
AGAAATGTCAGCGAATTTTAAGGAGGGATGTTATCGAAATCATCGATGAA
TTGATGGGGAGCTAGAGGTCGTTATTTCGAAAGCTTTGTAAAGCGTTTAA
AAGAAGTCATTACTGAGGAATTGGGAGGATTCAAAATGACAGGCAGTTTG
TGGAGGTACCTGTGTTTGAGATGAGGAGGCGTGCGAGACGCAGAAGACAG
ACACCTCTAAAGTTTCTGGATGACTTGCTTTAAACGTCCAAATCAGTATG
TAACCAAGATAACTGTGCGGAATAAAAGAATATTCTGCTAAGTCAGCAGA
AATGTAGTCGAGTCTGTCAAGAGCTGTGGTagaaaggcaaaatttttatt
tctcttGAAATATTTGATACAAACACGAGGTTCGAAATCTAAAATCTAAT
ATCAAACGAACTATAGTATATATAATTATATTAagagatttttaattttt
tatagcAATGTAATATTTAatgtaaaggcttggggacacgagaagttttt
ttcgcgttggtgcaatgcaatatGTTCCATCCCAACaccacaagaaaaaa
agtgcgtgtcccatagtttcttttattgtttcatgggacaaaaagtgagg
gaaatacccaaaagacattgattttgtccctgggacaatggagcaaaata
ttattcaaatcaattttactccattgtcccagggacaaaagtgagttgca
ttgcaccaacatgaaaaaaacttctcgggTCCCCAAGCCTTTTATAAAGG
AAGGCCTTATAATAATTTTAATGAAGCACGTATTCTTCCTCTTAGTTACC
GTATTCAGCCTAGCTGTATAAACAAACTTActggaaatttattttgataa
aagttttgacAGATCGCCTACTTTGTGTGTACGACCTTTATGATTTGTCT
CTCCTTTGTCATTTTAGTATGTAACAGATGTTAGGGTTGACCCACCAAAC
TCTATAACAACCTTGTTTCACAGCCCAgaggaactttttcccacagtggg
gaaTGTTCTAAGCTCTAAAAATTTGGTCCAAAGGATGGTccaattagttt
ttttattgtcaatttccagaggggggggggggN Coding sequence (CDS) from alignment at scaffold_469:531770..535952+ >TCONS_00067356 ID=TCONS_00067356|Name=TCONS_00067356|organism=Clytia hemisphaerica|type=CDS|length=3051bp|location=Sequence derived from alignment at scaffold_469:531770..535952+ (Clytia hemisphaerica)
atgaattcaaaatatcatcaaaaataCTTCGATAAAGTTGGTATTGTACA
CTGTGGTGATAAGAAGTCCAAGCAACTGGTGGATCGTTTGATGAAGAATA
TCGCACAAAAAGATTATCTCAACGAGACAACGTTTACCAgcaaagatttt
cataccagcAACAATGTCCCGTTGTTAGTCAGCATGACTCTGGCAACTTT
CAAAGAATCTAGACTACCCTTACTAGTGATTCTTACTAAAGACTTTTTCC
ACAAGATCTGGACAGATCAATTGAAGATTGGAATTCAACAAATGTTGCTT
GGATATTCAAGTCATTTTTGTTTACATATCTGGATGGATGACTTGGACAG
TACTGAGGTCAGGAAGTGGAGTACCGGCCTTCTCAGAAACGATTCTTCCT
TCAGAAGAGTCAAGTACCAAGACTTGCAATATACTactgataaagaacta
aaagaACAGATCATTGCTTTGATTAGagACAATACAGATAGAGAAGCaaa
gtatcgaaattattcagTACAAGACCAAGACGCATTGAACTTCACCGATT
TAGCGTTGAAATCATTATCCATCAAATCAAAGGACACAGCAGAGGGCTCA
CCACCGACAAGCATAACATCTGTTCCTTCGTCCTCAAGcaagaaacgaaa
gaaaaagaagaaccaATCTGCCAACCAGTATTTAAGAGGAGCGGCTGCAT
TCCCCAAAGCGAAAGTACCAAAAGAGACAACTCGATTGAGGGATTTATCA
CTGGATCAACGAGACAGAATAACGACCTTACTGGATGTTGGGTACGGTGC
CAACTGGAAACAAATTGGTCATTTCTATCAACTAACACCCGCTGAATTCC
GTGTCATTGAAACGGCGGGCCATGCTGGTCAACGACCGGCTGATTGTTTG
TTGAGATTGTTGTTGGCGAAAATGCCTGATTTGAGTTTGCAGGATTTAAA
GGAGAAATGTCAGCGAATTTTAAGGAGGGATGTTATCGAAATCATCGATG
AATTGATGGGGAGCTAGatgaattcaaaatatcatcaaaaataCTTCGAT
AAAGTTGGTATTGTACACTGTGGTGATAAGAAGTCCAAGCAACTGGTGGA
TCGTTTGATGAAGAATATCGCACAAAAAGATTATCTCAACGAGACAACGT
TTACCAgcaaagattttcataccagcAACAATGTCCCGTTGTTAGTCAGC
ATGACTCTGGCAACTTTCAAAGAATCTAGACTACCCTTACTAGTGATTCT
TACTAAAGACTTTTTCCACAAGATCTGGACAGATCAATTGAAGATTGGAA
TTCAACAAATGTTGCTTGGATATTCAAGTCATTTTTGTTTACATATCTGG
ATGGATGACTTGGACAGTACTGAGGTCAGGAAGTGGAGTACCGGCCTTCT
CAGAAACGATTCTTCCTTCAGAAGAGTCAAGTACCAAGACTTGCAATATA
CTactgataaagaactaaaagaACAGATCATTGCTTTGATTAGagACAAT
ACAGATAGAGAAGCaaagtatcgaaattattcagTACAAGACCAAGACGC
ATTGAACTTCACCGATTTAGCGTTGAAATCATTATCCATCAAATCAAAGG
ACACAGCAGAGGGCTCACCACCGACAAGCATAACATCTGTTCCTTCGTCC
TCAAGcaagaaacgaaagaaaaagaagaaccaATCTGCCAACCAGTATTT
AAGAGGAGCGGCTGCATTCCCCAAAGCGAAAGTACCAAAAGAGACAACTC
GATTGAGGGATTTATCACTGGATCAACGAGACAGAATAACGACCTTACTG
GATGTTGGGTACGGTGCCAACTGGAAACAAATTGGTCATTTCTATCAACT
AACACCCGCTGAATTCCGTGTCATTGAAACGGCGGGCCATGCTGGTCAAC
GACCGGCTGATTGTTTGTTGAGATTGTTGTTGGCGAAAATGCCTGATTTG
AGTTTGCAGGATTTAAAGGAGAAATGTCAGCGAATTTTAAGGAGGGATGT
TATCGAAATCATCGATGAATTGATGGGGAGCTAGatgaattcaaaatatc
atcaaaaataCTTCGATAAAGTTGGTATTGTACACTGTGGTGATAAGAAG
TCCAAGCAACTGGTGGATCGTTTGATGAAGAATATCGCACAAAAAGATTA
TCTCAACGAGACAACGTTTACCAgcaaagattttcataccagcAACAATG
TCCCGTTGTTAGTCAGCATGACTCTGGCAACTTTCAAAGAATCTAGACTA
CCCTTACTAGTGATTCTTACTAAAGACTTTTTCCACAAGATCTGGACAGA
TCAATTGAAGATTGGAATTCAACAAATGTTGCTTGGATATTCAAGTCATT
TTTGTTTACATATCTGGATGGATGACTTGGACAGTACTGAGGTCAGGAAG
TGGAGTACCGGCCTTCTCAGAAACGATTCTTCCTTCAGAAGAGTCAAGTA
CCAAGACTTGCAATATACTactgataaagaactaaaagaACAGATCATTG
CTTTGATTAGagACAATACAGATAGAGAAGCaaagtatcgaaattattca
gTACAAGACCAAGACGCATTGAACTTCACCGATTTAGCGTTGAAATCATT
ATCCATCAAATCAAAGGACACAGCAGAGGGCTCACCACCGACAAGCATAA
CATCTGTTCCTTCGTCCTCAAGcaagaaacgaaagaaaaagaagaaccaA
TCTGCCAACCAGTATTTAAGAGGAGCGGCTGCATTCCCCAAAGCGAAAGT
ACCAAAAGAGACAACTCGATTGAGGGATTTATCACTGGATCAACGAGACA
GAATAACGACCTTACTGGATGTTGGGTACGGTGCCAACTGGAAACAAATT
GGTCATTTCTATCAACTAACACCCGCTGAATTCCGTGTCATTGAAACGGC
GGGCCATGCTGGTCAACGACCGGCTGATTGTTTGTTGAGATTGTTGTTGG
CGAAAATGCCTGATTTGAGTTTGCAGGATTTAAAGGAGAAATGTCAGCGA
ATTTTAAGGAGGGATGTTATCGAAATCATCGATGAATTGATGGGGAGCTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067356-exon-scaffold_469-1491911889:531770..531908 | TCONS_00067356-exon-scaffold_469-1491911889:531770..531908 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1510915933:531770..531908 | TCONS_00067356-exon-scaffold_469-1510915933:531770..531908 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1575043694:531770..531908 | TCONS_00067356-exon-scaffold_469-1575043694:531770..531908 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1491911889:532288..532728 | TCONS_00067356-exon-scaffold_469-1491911889:532288..532728 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1510915933:532288..532728 | TCONS_00067356-exon-scaffold_469-1510915933:532288..532728 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1575043694:532288..532728 | TCONS_00067356-exon-scaffold_469-1575043694:532288..532728 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1491911889:534396..535952 | TCONS_00067356-exon-scaffold_469-1491911889:534396..535952 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1510915933:534396..535952 | TCONS_00067356-exon-scaffold_469-1510915933:534396..535952 | Clytia hemisphaerica | exon |
| TCONS_00067356-exon-scaffold_469-1575043694:534396..535952 | TCONS_00067356-exon-scaffold_469-1575043694:534396..535952 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_469 | supercontig | scaffold_469:531770..535952 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011029 | DEATH-like_dom |
Blast
The following BLAST results are available for this feature:
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