XLOC_041402 (gene) - C. hemisphaerica

Overview
NameXLOC_041402
Unique NameXLOC_041402
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_451:280100..284557+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041402 ID=XLOC_041402|Name=XLOC_041402|organism=Clytia hemisphaerica|type=gene|length=4458bp|location=Sequence derived from alignment at scaffold_451:280100..284557+ (Clytia hemisphaerica)
CTTAGACTAACAGACCACACCAGAGgtaaaaaaggtaaaattatttgaaa
tgaaAGGATTATTTCATTGCCTTTATGACTAACTAACTAAATTatagaaa
ttcaaaatatctaTTTTACAGTAGATCCAGCTTTGCCggctttaaaagaa
agttttttacaaaagtttgaAGGCTGATATTTTTGTTCTTGTGGCTTTTA
AAGTACACTGAgcacactttttttaatttctcagCTAGTCCCTTGATTGC
AAATTTTTTTGGCGTGAGCAAATTTTTGCCTAATGCAATAATGTAATAGG
GACGAATGGTCGGGTCGAAGGGACGATGCTTACTTTCACTATTTTTTGCG
TAATAAACCGATTTCGGCGATTTTCGttctcttaagggctctgaccatag
tccaaaaattgatttaggtatttgaacataaaagttatatttcaggttcc
ttaacacttttaacaaagaattgccttaataaattgctttttaatcgaat
cccttaagagtaattaagaattNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattca
ctatggtcagagcccttaatataCCAAAATCTTTTAGCATTATGTCGTGA
TGAAGTGTGTCGATCGTGGCCCCATTTCTAGAAAGTAATGATTATTTTCA
TCCAATTTTTCAGGTAAGTACACCATGGTTTCGCCGATATCTCGAAGACG
GGGCAATCAAAAGATCTCTAGAAACAATATTACCATAAGAACATCTCAGC
GTACGGAGTTGAATCATCTATTAAGCATTCTGGAGAAAGATAATCGGTAA
GAACTATCACCAAAAGATTCTGGGTTCCGTTTCCCAAGTGGAGTTTCAAG
TTCACAGCGTCGTTTAGTTGCcgataaattataaaaaaaacttctcacag
aaaaattggcaaaaatatcgtccccggtgaaaAATTATACTATTGTCCGT
gctcagaaaaatttaataaataaatgtTCACCGCAAGATATTGTGCTTAT
TTTTTCCATTCCCACTGAATGTTCTGGCTCGAAAATAATGGAGCTCAAAT
CACCAGTCATGAAAAAACATAGGAATATTAATCTCCATCCAATTTTGGTA
CATTATTTTTATAGCCCCACAGGTTCAAAAAatcccactgggtctgtgag
aaaaggGTGTCTAAAGAATGCTAAATTAGGTCTTCGTTCGGTAATTTCAG
ATCTGCGTTTGCTGACGGAAAAAACTCTGTCGTCGGACTCTTAAAATGTA
AATAAAGTTTAGACAGATTTGCCAACCATCGACCCTTATGAGAAATCTTT
TAACTAATTTGATCTTTGCACATTATAGAGAACGATGGTCGGTCTATGTT
GTCCTCAATTTTGTAGAGAGAAGGGCCACACTTACCAAGTGTTAATTTCT
GCCGCTATAACATGGGGGCTGGATGTTAGGGTTAGTCCGCGAGTTTTAAC
GAAGatctgaaatttattttttatttcagagaATTCGAACGTGATTTAAG
AATGTTGGCAGATCGATCAGACGCAGATTTGTCAACAAGACAAAAGATTA
TCGATCAACACAATCAAACACTTGAAACAAAATTACAACGGATTCGAATG
TTGTTATTACAACTTGAAGAAACAAACACATCATTTGCCACCTACTGAAG
ACAtctttcgaccgtagccgccaatttctgcgcgggcatttttttgtccg
ttttaccaccctaaaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaa
tagaaaaaactgTAAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaa
aaagtggcacgcgcctgaccacgcgactacggtcgaaatgATGTATTAAT
ATCAATTCTGCATTTCCTCAATGTATGTCTATCAATCCGGATAAACGTTA
TCAAGAAGCCGGTTGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACA
GTAGACAATGGAATATTTCTTCcgaaatgaacttgaattgacaaattTCA
GATTGTCATAAAGCATTGCTCCTATAAAAACAGAAATAGTACCACAGAGA
GTGACAGGCTAATGGAAGGACCGATGCATAGCCAACAATAAGTAATCCAG
CGGTGATTTAGAAAGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTA
AACTGaataaaaactattaaaatgTGGATCAATTTTCGGATTCCTATAGG
CACTTAAAATAAATGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAA
CTTGGTTAATGGTTTATGTTTGATTCTGGTTAAccatttattttttgata
actCAAAAAGGCTTCAAggattaaccctttaagtgccacggtccttTCTT
CAATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCA
TAAAAATACACCTGTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGT
CGGAGTTTTCCAGGGTTGGATGGACGTCAAATTTTTGTCATTGTATTGAT
ACACTCATACTTACGCTTATTTTGACGGCATTTGATCCCGANGATTTAGA
AAGACATTTAGAAAGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAA
AACTATCGAAATGTGGCTCAATTTCTCAATCCCAATGAGCACATAATATA
AATAATGATTTTTAGAACCTGGAATGGTGACTAATTAATGGTTTATGGTT
TAAtattctggaaaaaaaatttacacatagttaaccatatattttttaat
aactCAAAAAGGATCTAAGGATTAaacctttaagtgccacggtccttTTT
TCAATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATC
ATAAAAATACACCTGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGG
TCAGAGTTTGCCAGGGTTGAATGGACGTCAAATTTTTGAATCATTGTACT
GATACACTCATACTTACGCTTGTTTTGACGGCATTTGATCCCGATAAACT
TGAGCCTAATCCcttttaaaagtgttaaagcTGATACTGACTAGATGTAA
AATATCTTGCAagaattttcaatgtttttcaacTTAAAATGCAATCAGGA
CAATCTGGATAGTTAAATTATATTGTATGTTGAATATCTGTAATGTTTAT
CTTCCTTTGCCAAAATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGA
AGGGAATTCGTCTTTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCC
TCTTTCCAAAATATTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGG
AATTCGTCTTTCCCATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTT
TCCAAAATATTGGGATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATT
CGTCTTTCCTATTCATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGT
GACCTCCGAGAGTTATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCAT
CAGGGAATCTCCTCGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGA
TTGAGTGAAGGGAATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCC
AaagatttcttcattttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCC
AATAGCCAGGAAAGAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAAT
CTTTACGATATGTCTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCA
CCACTTGGCAAATCATTCTCACCATGAGAATTTATCAATTGCTGTGCGTC
ATTTGGGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00066129TCONS_00066129Clytia hemisphaericatranscript
TCONS_00066130TCONS_00066130Clytia hemisphaericatranscript
TCONS_00066131TCONS_00066131Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:280100..284557 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.02	0	0	0.18	0.37	2.09	0.5	1.38	1.29	1.95	1.44	0.77	0.57	1.41	1.27	0.52	0.72	1.53	1.58	0.93	1.42	2.65	2.54	0.64	0.11	0.06	0