TCONS_00066130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066130
Unique NameTCONS_00066130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066130 ID=TCONS_00066130|Name=TCONS_00066130|organism=Clytia hemisphaerica|type=transcript|length=2495bp
TTAGACTAACAGACCACACCAGAGgtaaaaaagGTAAGTACACCATGGTT
TCGCCGATATCTCGAAGACGGGGCAATCAAAAGATCTCTAGAAACAATAT
TACCATAAGAACATCTCAGCGTACGGAGTTGAATCATCTATTAAGCATTC
TGGAGAAAGATAATCGagaATTCGAACGTGATTTAAGAATGTTGGCAGAT
CGATCAGACGCAGATTTGTCAACAAGACAAAAGATTATCGATCAACACAA
TCAAACACTTGAAACAAAATTACAACGGATTCGAATGTTGTTATTACAAC
TTGAAGAAACAAACACATCATTTGCCACCTACTGAAGACAtctttcgacc
gtagccgccaatttctgcgcgggcatttttttgtccgttttaccacccta
aaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaatagaaaaaactgT
AAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaaaaagtggcacgcg
cctgaccacgcgactacggtcgaaatgATGTATTAATATCAATTCTGCAT
TTCCTCAATGTATGTCTATCAATCCGGATAAACGTTATCAAGAAGCCGGT
TGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACAGTAGACAATGGAA
TATTTCTTCcgaaatgaacttgaattgacaaattTCAGATTGTCATAAAG
CATTGCTCCTATAAAAACAGAAATAGTACCACAGAGAGTGACAGGCTAAT
GGAAGGACCGATGCATAGCCAACAATAAGTAATCCAGCGGTGATTTAGAA
AGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTAAACTGaataaaaa
ctattaaaatgTGGATCAATTTTCGGATTCCTATAGGCACTTAAAATAAA
TGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAACTTGGTTAATGGT
TTATGTTTGATTCTGGTTAAccatttattttttgataactCAAAAAGGCT
TCAAggattaaccctttaagtgccacggtccttTCTTCAATAGTTATGGT
GAAATTTatataagaaaagtaaaaaacataAAGATCATAAAAATACACCT
GTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGTCGGAGTTTTCCAG
GGTTGGATGGACGTCAAATTTTTGTCATTGTATTGATACACTCATACTTA
CGCTTATTTTGACGGCATTTGATCCCGANGATTTAGAAAGACATTTAGAA
AGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAAAACTATCGAAATG
TGGCTCAATTTCTCAATCCCAATGAGCACATAATATAAATAATGATTTTT
AGAACCTGGAATGGTGACTAATTAATGGTTTATGGTTTAAtattctggaa
aaaaaatttacacatagttaaccatatattttttaataactCAAAAAGGA
TCTAAGGATTAaacctttaagtgccacggtccttTTTTCAATAGTTATGG
TGAAATTTatataagaaaagtaaaaaacataAAGATCATAAAAATACACC
TGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGGTCAGAGTTTGCCA
GGGTTGAATGGACGTCAAATTTTTGAATCATTGTACTGATACACTCATAC
TTACGCTTGTTTTGACGGCATTTGATCCCGATAAACTTGAGCCTAATCCc
ttttaaaagtgttaaagcTGATACTGACTAGATGTAAAATATCTTGCAag
aattttcaatgtttttcaacTTAAAATGCAATCAGGACAATCTGGATAGT
TAAATTATATTGTATGTTGAATATCTGTAATGTTTATCTTCCTTTGCCAA
AATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGAAGGGAATTCGTCT
TTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCCTCTTTCCAAAATA
TTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGGAATTCGTCTTTCC
CATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTTTCCAAAATATTGG
GATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATTCGTCTTTCCTATT
CATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGTGACCTCCGAGAGT
TATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCATCAGGGAATCTCCT
CGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGATTGAGTGAAGGGA
ATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCCAaagatttcttca
ttttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCCAATAGCCAGGAAA
GAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAATCTTTACGATATGT
CTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCACCACTTGGCAAAT
CATTCTCACCATGAGAATTTATCAATTGCTGTGCGTCATTTGGGC
Run BLAST on NCBI

transcript from alignment at scaffold_451:280101..284557+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066130 ID=TCONS_00066130|Name=TCONS_00066130|organism=Clytia hemisphaerica|type=transcript|length=4457bp|location=Sequence derived from alignment at scaffold_451:280101..284557+ (Clytia hemisphaerica)
TTAGACTAACAGACCACACCAGAGgtaaaaaaggtaaaattatttgaaat
gaaAGGATTATTTCATTGCCTTTATGACTAACTAACTAAATTatagaaat
tcaaaatatctaTTTTACAGTAGATCCAGCTTTGCCggctttaaaagaaa
gttttttacaaaagtttgaAGGCTGATATTTTTGTTCTTGTGGCTTTTAA
AGTACACTGAgcacactttttttaatttctcagCTAGTCCCTTGATTGCA
AATTTTTTTGGCGTGAGCAAATTTTTGCCTAATGCAATAATGTAATAGGG
ACGAATGGTCGGGTCGAAGGGACGATGCTTACTTTCACTATTTTTTGCGT
AATAAACCGATTTCGGCGATTTTCGttctcttaagggctctgaccatagt
ccaaaaattgatttaggtatttgaacataaaagttatatttcaggttcct
taacacttttaacaaagaattgccttaataaattgctttttaatcgaatc
ccttaagagtaattaagaattNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattcac
tatggtcagagcccttaatataCCAAAATCTTTTAGCATTATGTCGTGAT
GAAGTGTGTCGATCGTGGCCCCATTTCTAGAAAGTAATGATTATTTTCAT
CCAATTTTTCAGGTAAGTACACCATGGTTTCGCCGATATCTCGAAGACGG
GGCAATCAAAAGATCTCTAGAAACAATATTACCATAAGAACATCTCAGCG
TACGGAGTTGAATCATCTATTAAGCATTCTGGAGAAAGATAATCGGTAAG
AACTATCACCAAAAGATTCTGGGTTCCGTTTCCCAAGTGGAGTTTCAAGT
TCACAGCGTCGTTTAGTTGCcgataaattataaaaaaaacttctcacaga
aaaattggcaaaaatatcgtccccggtgaaaAATTATACTATTGTCCGTg
ctcagaaaaatttaataaataaatgtTCACCGCAAGATATTGTGCTTATT
TTTTCCATTCCCACTGAATGTTCTGGCTCGAAAATAATGGAGCTCAAATC
ACCAGTCATGAAAAAACATAGGAATATTAATCTCCATCCAATTTTGGTAC
ATTATTTTTATAGCCCCACAGGTTCAAAAAatcccactgggtctgtgaga
aaaggGTGTCTAAAGAATGCTAAATTAGGTCTTCGTTCGGTAATTTCAGA
TCTGCGTTTGCTGACGGAAAAAACTCTGTCGTCGGACTCTTAAAATGTAA
ATAAAGTTTAGACAGATTTGCCAACCATCGACCCTTATGAGAAATCTTTT
AACTAATTTGATCTTTGCACATTATAGAGAACGATGGTCGGTCTATGTTG
TCCTCAATTTTGTAGAGAGAAGGGCCACACTTACCAAGTGTTAATTTCTG
CCGCTATAACATGGGGGCTGGATGTTAGGGTTAGTCCGCGAGTTTTAACG
AAGatctgaaatttattttttatttcagagaATTCGAACGTGATTTAAGA
ATGTTGGCAGATCGATCAGACGCAGATTTGTCAACAAGACAAAAGATTAT
CGATCAACACAATCAAACACTTGAAACAAAATTACAACGGATTCGAATGT
TGTTATTACAACTTGAAGAAACAAACACATCATTTGCCACCTACTGAAGA
CAtctttcgaccgtagccgccaatttctgcgcgggcatttttttgtccgt
tttaccaccctaaaaccgtccaaGTGTTTTTTTGCgcgcctaaagacaat
agaaaaaactgTAAAGAAATAAGAATTGGATTGAGCTTAGGGTTGATaaa
aagtggcacgcgcctgaccacgcgactacggtcgaaatgATGTATTAATA
TCAATTCTGCATTTCCTCAATGTATGTCTATCAATCCGGATAAACGTTAT
CAAGAAGCCGGTTGATGTGAAGGCCAAGTGACTCAGGCGACTCAAAACAG
TAGACAATGGAATATTTCTTCcgaaatgaacttgaattgacaaattTCAG
ATTGTCATAAAGCATTGCTCCTATAAAAACAGAAATAGTACCACAGAGAG
TGACAGGCTAATGGAAGGACCGATGCATAGCCAACAATAAGTAATCCAGC
GGTGATTTAGAAAGACATTTAGAAAGATTGTCCGACTAATTCGAAGCTAA
ACTGaataaaaactattaaaatgTGGATCAATTTTCGGATTCCTATAGGC
ACTTAAAATAAATGATGACTGAGAAACCTGGAATGGTGACTAGTTAGAAC
TTGGTTAATGGTTTATGTTTGATTCTGGTTAAccatttattttttgataa
ctCAAAAAGGCTTCAAggattaaccctttaagtgccacggtccttTCTTC
AATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCAT
AAAAATACACCTGTCTTcgttcaaaaaagttgaatgaaaGGGACTAGGTC
GGAGTTTTCCAGGGTTGGATGGACGTCAAATTTTTGTCATTGTATTGATA
CACTCATACTTACGCTTATTTTGACGGCATTTGATCCCGANGATTTAGAA
AGACATTTAGAAAGACTGTCCGGCTGATTGGAAACTTAACTGAAGTAAAA
ACTATCGAAATGTGGCTCAATTTCTCAATCCCAATGAGCACATAATATAA
ATAATGATTTTTAGAACCTGGAATGGTGACTAATTAATGGTTTATGGTTT
AAtattctggaaaaaaaatttacacatagttaaccatatattttttaata
actCAAAAAGGATCTAAGGATTAaacctttaagtgccacggtccttTTTT
CAATAGTTATGGTGAAATTTatataagaaaagtaaaaaacataAAGATCA
TAAAAATACACCTGTCTTCgttcgaaaaagttgaatgaaAGGGACTAGGT
CAGAGTTTGCCAGGGTTGAATGGACGTCAAATTTTTGAATCATTGTACTG
ATACACTCATACTTACGCTTGTTTTGACGGCATTTGATCCCGATAAACTT
GAGCCTAATCCcttttaaaagtgttaaagcTGATACTGACTAGATGTAAA
ATATCTTGCAagaattttcaatgtttttcaacTTAAAATGCAATCAGGAC
AATCTGGATAGTTAAATTATATTGTATGTTGAATATCTGTAATGTTTATC
TTCCTTTGCCAAAATATTGGTTCTTTGCTTTTTCCCACATGGCTGGTGAA
GGGAATTCGTCTTTCCCATGCTTTCCAAGGATGGAATTTCTAATATCCCT
CTTTCCAAAATATTGGTTCTTCGCTTTCTCCCACATGGCTGGCGAGGGGA
ATTCGTCTTTCCCATGCTTTCCGAGGATGGAATTTCTAAATTCTCTCTTT
CCAAAATATTGGGATTTTGCTTTTTCCCACATACCTGGTGAGGGAAATTC
GTCTTTCCTATTCATTCCAAAAGCGTCATTTTCAATTTCCCTCACCAGTG
ACCTCCGAGAGTTATCTTTTCCAAAATTCTTCCTTCCAAATCTTCTCATC
AGGGAATCTCCTCGCTTCCAGATCCCCAGAGAAGGATTTACCCTTAAGAT
TGAGTGAAGGGAATCTCCTCGTCTCCAAACACTAAGTGAGGGTGATTCCA
aagatttcttcattttcgacCCCAGGCTCAGGGAATCGTCTTTCTTTCCA
ATAGCCAGGAAAGAGGATCGACCTCTTTTGGGAATTCCCCGCCGGGAATC
TTTACGATATGTCTCCATAGCTTGTGATTTTGCAGTTTCCCACATTCCAC
CACTTGGCAAATCATTCTCACCATGAGAATTTATCAATTGCTGTGCGTCA
TTTGGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041402XLOC_041402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066130-exon-scaffold_451-1491911889:280101..280133TCONS_00066130-exon-scaffold_451-1491911889:280101..280133Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1510915933:280101..280133TCONS_00066130-exon-scaffold_451-1510915933:280101..280133Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1575043694:280101..280133TCONS_00066130-exon-scaffold_451-1575043694:280101..280133Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1491911889:281413..281545TCONS_00066130-exon-scaffold_451-1491911889:281413..281545Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1510915933:281413..281545TCONS_00066130-exon-scaffold_451-1510915933:281413..281545Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1575043694:281413..281545TCONS_00066130-exon-scaffold_451-1575043694:281413..281545Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1491911889:282229..284557TCONS_00066130-exon-scaffold_451-1491911889:282229..284557Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1510915933:282229..284557TCONS_00066130-exon-scaffold_451-1510915933:282229..284557Clytia hemisphaericaexon
TCONS_00066130-exon-scaffold_451-1575043694:282229..284557TCONS_00066130-exon-scaffold_451-1575043694:282229..284557Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:280101..284557 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.00276944	0.00340169	0.00501197	0.00796501	0.0216039	0.0127496	1.53697	1.0689	0.0044521	0.0031445	1.40805	1.27342	0.00505618	0.263415	0.589049	1.57933	0.709036	0.490256	2.62766	1.09231e-05	0.00520256	0	0.000599658	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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