XLOC_040668 (gene) - C. hemisphaerica

Overview
NameXLOC_040668
Unique NameXLOC_040668
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_425:165240..171993+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040668 ID=XLOC_040668|Name=XLOC_040668|organism=Clytia hemisphaerica|type=gene|length=6754bp|location=Sequence derived from alignment at scaffold_425:165240..171993+ (Clytia hemisphaerica)
CATCGGATGCTGTTTTACTGAAGCAATGGAATGCTAATTCACAACAGCAG ATTAAAGAGGAAGAGTTTGACTTAACTTTCAATGAAGTTAATCCaacaaa ccaaaatattttggcagAATTAACAGCACAAACTCAAAAACTTGAGAACA CGCTACCCCTAATTCAACAAGAAATACAGAAAGTGCCAACAGAATCTTCA GAGCAGAAATATTCTCCCAGAGAAAATATTGACATGGATGGAGATACGTA CGTTTATTTTTATCTATATTGCCTGTATTACCTTGATAAGATATCCCTTA AGATATACGTGTGTTTCGCTGACTGaataaaaagtgaaataaaTAGAGAA GTTGTGTAGAAGGCACTGAGACCCATTTTGACAACCTTTAAGGCATTGat agaggtgccaactctcacacATTGGGCGTGAGACTCATGCATTTCCACAC TGTCTCACGCAAGGTTGATTTCTCACACATTTTTGAGATTTGAGTTTTCC CCGTTTTTCtgattctttgtaaaaagtttccctgatttcccaatttttgg taaaagtttccttgattttccgattttcggaaaaaagtttccctgatttc tgatttttttgaaaaatttttctgatttctgatatcggaaaattagaaaa accaaGCTAAAATTTCGGATTCCgcttcgaaatttttatctcatgcAATA TGAATATCTCAAGCAGGCCAaattttagaaaggcaaggcagtgtccgttg gtggccaaaaagggcactttttcctATGTTGTTCCACTAAAAAGGcagtt tttaccaatatttaaGTAATTTCAGGAGGGGCATAAAGAATTGGCAGGTC TGATATTTtacatttaaaagattttgaatgGAACACGTTGATTAAGAACC TCTCAATCAAAAGAAACTCTGCATAGTGCAtgcccccccccaatattttg caaagtaattttttttactttaaaaaatcttatatataccgtttagaggg gtgaaataagggtaaaaagtcgaaaattttcTTCGTCGCCCAACCATGGT GGGCGGCAtattttttggccccctcaattcgattcgcacgccgggggcca tgtaGTGTTTAGGAAATTCCCAAAAGCCAGTCTTATGAATGATTTTCCTA ACATCTAAAAACAGATTtcataccgtaacttggtcgatattagaccaact tacggtatgcaCAATGTGCATGTGTAAAAAAAGCATAAGGCTTAAAATCA GCCAGTCTTACCTCCACAAAGTGATATGTGGCAAACCTTTCAATAAGGTG TATACCAAGGAAAGAAGGATGAGCAAAACTTAGTTTTTACACTAATATTT GAGAAACTTATTTTGAAAAGAGACCTTTTTAGCTACCTTTTTAGTCTCAG CCATATTAGCCAAAATTTGAGCTTGAAAAAGTCACTGCTGaaagatataa aataaaatgagtTTTTAATTGCACAAAACTTTGCGCTTCAGCTTGATCCC AATGTATGAGTCCTGCAAAAAACCTCTAGAATACACTGCTAGGaatgatt tgaaaaatacaaggaTAACATCAAAAATGAGCAATTTAATGCTAATAAAA TCGATAATAAaataacaacctatttttttcttattcaagTATGGTAATTA TTAAGTActtacaaaaattacaaacaaatttaaacaaagatattttatag aatagagaaaaatttttgtaaactaCTTAAATCTATATTCAAATTTAAGT TTtgtatataattataaaaaagcaGCTCTGcaataaagcaaaacaatgaa GTCAAAAAACTTTCCTCTCATTCAATGATGTTCTACTTCATTTTGAACAT ATTGTGTGCTCGAATCTTTTTCGATGCCTTTCATAAATTCATGCATGTCA TCGTGTCCTTCATCTTCAAGTTGATGACTTTCCTCTGGTTTCTTTGTTGT tgtcattttgtatttatcgGGAATATTACCAACAATTTCAACTTCTAGGA CCTTTCCAGTCTGTTTAGTTTTAGGCTTGTCTTCTTTCGTCAAAATCATT TCTTCAACACACTCATTCTCAACAGTTTCATTTTGAGATggtattttttc accaaaagaTGAAACAAAGTCTTTCATATCATCCTCAGCcatcttgattt gatttgttttgataaaaaaattacaaaaaataattttcttatacTAACTC AAAAACAGCATGCAAAATCTTTCTTCATACTAATTCAAATAAGCCACACA GTTCCTGATCAGCTCCTCTGTATAACCTTTGAGGAACCTTTCATCAAATA CAACTCTATCAGTTTCGCTGAAAAGTTAAAAGACAGGATCCTTGAGATTG TTGATTTCACTGAGCATGCTGTTTCAAGCATTTCTTTCTTTCAGCGTTTC AGTTTGGAGAAATTAACTATATTATCTAACTTATAAATATAATGAATCAT ACTAGAGATTTTCAAGGGAAAACAAGTAAAGTAAGATTTGCCTCATCCAA GACATCTCTTgatacaaatttttacaaacttGATATTCCTTTCTAGGCCA TTGCATATTCTGGTAGTCCGATGTGAAGGGAGAAACAAGCAAACGAGAGG TTTTGGATTATCTCAGAGAAATAACTATGAAAATGATCAGGCCAGAAAAG ATTTCTTTGATAAAGCACATCTCTACAAACAATACGTCAACCGACAAAAC AATGATGGAATGGTACGTatgaaaaaaaggttttaaCACTTCTAGCGTGA TGAAGTATTAAGTTATGGGGGTAATATTGACCCTTCTTTTCATCATATAG GATAAATAGCAAAGGGGATAAGGAAGAGTACTGTTGCATAAACATAACCT TGTTGATTCCAATCAATGCAAGATTTAGGTTTGAATTTAAAGGggtaatc agatggtttgtaattTATGTCCCCATATGGCATGTGGGATCCTTTtattg tcctgagcaaaatctcaaaatatttttaactattttccaaagtcgagatt ttaagttacaagtttttggcttttagaataaaacaatagaatttcaacgt aataACCGTGTAAGaaccctttttcaaaaatttcaaattttagtttctcg atcttggaaaattgttacacaaaaatactttgaggttttactaATGTACT AAGGACCACAGAAGATTTCTGTAATCTAAATATCTCTAacaatctgatta tccctttaatgtTTTTTACATTTAGACACCACTACACTACGCCGTGGAAA TTGGTTGCCCGCAAATGGTTCACAAGCTGCTTCAACTGGGGAGCTGTTTA AACCGATTCAACAACAGATTAGAATCTCCAATACACGTGGCTTTGAGACA AAGGAAAGATTCTGATTTGTACAATTTCACAACAATGGAACATTTGAAAC AGATTGTGGAGCAACTTTTACGTGCTAACCAAGCAAGATATGGTGACGAT CACATGGATTTGAACAAGAAGGATAAAAATGGTATGTCATCAATAATCAA tattctttgtttatttttacgccagacaaataaacaaagcgATCCCAAAA AGTCCCTTTCTAAAGATATGATTTGACTCAAAGAGGCTCAAAGTTCAGCT GACTGGCTAATTTGGAAATTCCAAATGAACACGCGAGGGAAAATCTTAAT CAACATTCGTAGAAAAGCTGATTCATGAATttatattgtatattttttta ataagaattcgTAATGAAACAAGAATTTTTCACCTTAGGTCTGACTTGTG TTCATCTGGCTTGCTTGTACGCAAACCACGAAGCAACAAATTTGGTCAAT CTATTGAAATGCTATGGTGCAGATCTTGATGAAAAGGTACTTTGAGTTTT TTTCTGGTTCTGTCAGTTCCAACAATTATTCTTATACGAAGCTCGTGGTC ATCTGGTTTTACCCAATTTACACATCAAGTTTCTATGAAAGACCAGTGGG GAAGTGAGTACTGATGTTTAGAAGAGTTATCtctaaatttccaaaagaac AGCCTTTAATTGCTTGGTTTTCAGCCaactaaaagtttttttgattagaa caaactatataagaacataaggcttcgatggccaaactATATAGAACAAC TTAAGAAAATGGGaacattttgagattattttcagGTCTAAAACTAAAAA GAACATCCAAGAGATTcgaaaaactttggacgttctTATTAAAAAGACGT GTAATAAGTCAGCCGTCCATTTCCTTTGACCTTGTAACCTGACACTTTAA CAACAAGATCCGTTCCTCGTTTACAGGAAGATCGACAAGGATTCACTCCG CTACAGTTCATCATCAACAAAGGGAAGGATTGTAATCTTCAAAAGCCTGA AGGAATCAAACAAAGAGAGGCTTACTTCAAGACAGCAAAGCATCTGATCA CCCAACAGAAAGTCGATGTGACGTCACTATCCATGGCTGAAGACACTGCG TTGCATTTAGCCTGTGCAGCCAACGATAAGGGGCTAGTGGAGTTGCTGTT GGGTCGTGATGAAATTGAAGTCAACCTGAAGAATGCGTTCAANACCACTA CACTACGCCGTGGAAATTGGTTGCCCGCAAATGGTTCACAAGCTGCTTCA ACTGGGGAGCTGTTTAAACCGATTCAACAACAGATTAGAATCTCCAATAC ACGTGGCTTTGAGACAAAGGAAAGATTCTGATTTGTACAATTTCACAACA ATGGAACATTTGAAACAGATTGTGGAGCAACTTTTACGTGCTAACCAAGC AAGATATGGTGACGATCACATGGATTTGAACAAGAAGGATAAAAATGGTA TGTCATCAATAATCAAtattctttgtttatttttacgccagacaaataaa caaagcgATGCCAAAAAGTCCCTTTCTAAAGATATGATTTGACTCAAAGA GGCTCAAAGTTCAGCTGACTGGCTAATTTGGAAATTCCAAATGAACACGC GAGGGAAAATCTTAATCAACATTCGTAGAAAAGCTGATTCATGAATttat attgtatatttttttatataagaattcGTAATGAAACAAGAATTTTTCAC CTTAGGTCTGACTTGTGTTCATCTGGCTTGCTTGTACGCAAACCACGAAG CAACAAATTTGGTCAATCTATTGAAATGCTATGGTGCAGATCTTGATGAA AAGGTACTTTGAGTTTTTTTCTGGTTCTGTCAGTTCCAACAATTATTCAT CTTATACGAAGCTCGTGGTCATCTGGTTTTACCCAATTTACACATCGAGT TTCTATGAAAGACCAGTGGGGAAGTGAGTACTGATGTTTAGAAGAGTTAT CtctaaatttccaaaagaacAGCCTTTAATTGCTTGGTTTTCAGCCaact aaaagtttttttgattagaacaaactatataagaacataaggcttcgatg gccaaactATATAGAACAACTTAAGAAAATGGGaacattttgagattatt ttcagGTCTAAAACTAAAAAGAACATCCAAGAGATTcgaaaaactttgga cgttttaATTAAAAAGACGTGTAATAAGTCAGCCGTTCATTCCTTTTACC TGACACTTTAACAACAAGATCCGTTCCTCGTTTACAGGAAGATCGACAAG GATTCACTCCTCTACAGTTCATCATCAACAAAGGGAAGGATTGTAATCTT CAAAAGCCTGAAGGAATCAAACAAAGAAATGCTTACTTCAAGACAGCAAA GCATCTGATCACCCAACAGAAAGTCGATGTGACGTCACTATCCATGGCTG AAGACACTGCATTGCATTTAGCCTGTGCAGCCAACGATAAGGGGCTAGTG GAGTTGCTGTTGGGTCGTGATGAAATTGAAGTCAACCTGAAGAATGCGTT CaagaaaaatgagaaagatTTGACGGATGACGACcaggtaattttgaaaa aaataatttctttttactGGGAGACTTCAATCACATGTCagcatttcaac ttttaaatagggataaattaaatgaagaaataTATAAAATCCACCACTTC CTTCTGCCTGGAATATCAGTATTAAAATGTGCTCACGTAAATATAACATT TCCACTTTACTGAAACAAAATTGAGTTTTATATCTTTCTTCGATCTACGG CAACAAAAGATGTTTATAGTCATCGAAAATGGGGCATGATTCTCCCTGAT TTTGCGATTGTCTTGATGCTCTAGAATATATTTTTAACGAATTACATTTC TGTATAATTTCAGATCAAAGAGATGCTTGAAGTGAAATatcgtcaaaaaa gaagaaaacgaaagaaTAACGAACAAGGGGTGACAAGCGGCAAGGCGAAA AAGGCGAAATAAATTCAATATGTTTTCATTTCGGCGAAGacctgtaaaaa tgaaaaataaccatatatacatttttattcagttttatttttttcagttt taaaaatttttattgtaattaaGCATAAGTAACCATGAAAAATAACATTt ggaaaatccaaaaaaatcatttttgtaaatagaGGCGAAATTTTGatatt aaaaaaagttcaaaaggattcgtatttttttttacttttgagcttttaaa atttaaaatgtaaatataTTATGTAGATTATTTAAAGATTGATCGATACT TTAAATTGCTTGCCCCCCGTATCTCGTACCAGTTGtcacatacacgcttt tttataagaatagtgtactttggatgagggccaagtattcttaagaaatt gacaaaatcgagggtgaaatattcttaacatatacttgattttttagact tgac
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064839TCONS_00064839Clytia hemisphaericatranscript
TCONS_00064840TCONS_00064840Clytia hemisphaericatranscript
TCONS_00064841TCONS_00064841Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064841-proteinTCONS_00064841-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_425supercontigscaffold_425:165240..171993 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.96 4.6 1.81 1.45 8.75 5.78 12.88 20.31 14.8 51.04 26.48 22.68 45.54 43.91 37.95 43.41 10.66 14.84 38.5 45.04 8.76 9.1 12.82 16.56 27.49 28.31 37.61 37.27 16.5 8.01