XLOC_040248 (gene) - C. hemisphaerica

Overview
NameXLOC_040248
Unique NameXLOC_040248
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_41:782424..786012+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040248 ID=XLOC_040248|Name=XLOC_040248|organism=Clytia hemisphaerica|type=gene|length=3589bp|location=Sequence derived from alignment at scaffold_41:782424..786012+ (Clytia hemisphaerica)
GTAGAATGTCAACCTCGTATATCAATCAgcattttatcaattttcaaact
taaagaTGTGGTTGAATCAATAGAGACCGTTTCACACGGTCTACAAAGAA
TCTGTCTTGAAAATTTATAACGAGACAAAATAATGAGCGAGCGAGTAAAC
AAAGTTGAAGCGTTGACGAGAAATAAATTGTTATTTGATTTTACTTCAAT
ATTAAACACAGGAGAAGAAAGTGACGACGAGATAAAGTAAATGATGTATG
AAACCCAAAGCCAACAAACAGTCTTAAAGGTGATTACAGCCGCTGTGGTT
TTATTAACGAGTTTGGTGTGGGCTACATTATAAATACAGTACAAGTTTAT
GAAATCTCGTTCAAAACTTACTTGCATAAGAGAAGAGAGGtcacaaaaga
aatatttcaggaagaggaaaaatttttgagaatatCTTTACTACTTGAAT
TGACTTGAATAGGGATTTGATGTTATGAAAATGTGGAGACTTCTAATATC
TGTGGTATTATGTGTTGGCGTGGTGGAGGCAAATGTTATTGATAGTCTGT
GGAAAAGACTTCAAGCAATGAACAGAGGGATTGTTTTTGTTGAACCTACA
TACCCACCACCAGTAAGTTCAATATGTCAAtttctcaaaagaaaaactgc
tAGCTAGGTAGACTAGGACCGtttttaatttatgcaataCCAGTTTGTAT
AAATTACAATTTTGTCCCTTCCATtactttttacttattttttactatgt
ctgaattagttgACTAATATGCTAGATTATAGCTAGGCTATTGACATCCT
CAAATGAATTCATCCAATTTTTCCTGAGATGTACGATCTACTAGGTCTAG
ATTTGTGTACAATTATATAAAGTTAATGTAAGCTCACCATTACGTATTTA
CGAAGACCTTCAAATTAAATCTAAAGAGAAGAGCTGCGCTCGGATATTCT
TTTTATAATTTCTGTTGTATTATGTAACTTTTAAatctttaactttttta
ttcgatAATTTTCCTTTggatattttcattattttgttagTAGGCTAGTA
GTGTGATCTTGactgttaaagaaaagatttttgaaatcgAACCCAGTTTT
ATCGAACTGATAATTCGCAAATAGtgggcaaaaaaatttaaaatgaaagt
caGTTGTCAAAACGAGTcggaattgcaaaaaaaaaactcagtGTTTAAGA
CGACCCGATGACCTGTTAAAGTAAAACCCTTCTCATCCATGTTAAAGAAT
TCTTCAGGTGGATCAGCTATACAGGATAATAGGATTTTTCAGTTCATTAC
ATAACTTAATTCTATTAACTTTTAGACACGAGTTTGTGGAAACGATTACG
AATGCTCACACAAAGAAACGTGCAATGCTTATACCAAGAATTGTGAAGGG
TGTAAATTACGTGGTGAACTGTGTAGGCGAAGTGGAAATTGCTGCAATGA
AGACTTACGTTGTATATGGGGCAAGTGTATTGATCCTTTGAAGACGGATG
GTAAGAAAAACCACAGATGTTACAACCAGAAAGATTGTCGACCAGGATTC
TGTTGTGCCAAATATGAAGGTGAAAGTGTTTGTCGTCCATTGTTGTTGGA
AGGAGATTCATGTGAGGTTCCACCAGGAGGAATTTCTTTTACCATCAATC
ATAAATGTCCTTGTGGTAAAGGGTTAAGATGCCAAGCTAAAAGGTAAGTT
TGTTTGATGTTTGTTAGTGGTTAAAATGTTTAGAGTGGGTTACTATCCAA
TTCGAATGTCCACAAAGTTGAGGACTCATTGGAACAGCTAGCTTGGGTTG
TGTTAAACCGAGGATTCAGATACTTGGGTATTACTTCTAGCGAGTGGAGT
TAATTTTAACTTAAATACTCTGTTGATTTGCAATGGTTgactttaaattt
ttcttcaaaacaaatCAAGTTGTTACTTTAACCGATAAAGAGAAACTAAA
AAATTAGTCCCTAAAATGTTGAATCGTTGCTTTCAATAATAAAATGAGAC
TTAGAGATACATGATTGTTTTATCCTTTGATTTCAGTACTGTGAGGAAAC
ATGATTTGAGATGTGCCTATACGAACGCAACATGGACGTCGTATAAATGA
AGAAATGTGGATGAGATCAATCAAAAGACCCAGAACGGATTCGATGATGA
AAAACTGGAAATTACACAAACTATTTATCTTATGAATAAGAATCGAATAA
TTTAGAAAACCAAAAGCATTTATGAGAATGAATACAACAATGATGATGTG
AGTGTTTAGAGAGAGTTCTATCTAGATTGtttgaagaaaatcaaatcatc
agaaaatcaaactcaaatttggaAATGGGTACCTCGAAAAGTTTCGCTTT
ATCAAATGACATTTCCATAGATAtaaaaagcccgaagggctagatgtcgt
gctttggttGAAAAGTGTGCAGTGGttcctaggtcacgtgacattacaat
agaatttcagctcttgaccaatcagaagcttcacgggttttcgaaaacaa
tagaaacagTATTTTTGGCCtgtgatggcttaaagcacgacatctagccc
tttgggctttataaatctgtgggcATTTCATCTGAAGAGAAAAGTGtaag
caaaatttgaatatgaattaTACGAAAAACAGGAtcttaaaaattctaaa
aactaTTCTACAACATTGTATcataataaagaaaataatatataatcCAC
CTTTTAACTTAAAAAACCATACTTAAATTTAATAAATATTATATAAAcca
aattatatattatatttacttttttatacaACGTATgtaacagtttgaaa
aatcttttaaaaacataTCAAGTCATTTTAATATCATCGTCTATTGATTT
AATAAGTTTGTGTCAGATTAAATTCgtgatttttgaccttttttctaCAA
ACACTACTAGCATATAAGTTGAAAGAGAAGTGAAATAAAGTCAACCCATT
GGTTAGAATTGAAGTCCCAAAAATAAGCCAATGGAATgctttcacttcgt
ttcgaaagaTCAAGACTAATAATGGACCTTCATGTTTTACTTCAACAAAT
TGATACATATAACAATTCATTGCATCAGTAACTGCCCGCGTTATTGAAGA
ACGAAGACAAACATCTGCATTTGTTTGGGGTGATTTATTTCGTCAATATA
GAATACAAGAACCCGGTATACCTTGTCAAACAGCGACCATTCTTGACCAT
AACATTCATTTATATCAAGTCTTCAAATCTGTGTAGAAATAGTACCAAAG
TCTATGCTCATTGAGAATCTAAGAGTTACATTTATAAATTTTTCGACCAT
TTTTTTCTGAATCCAGTAATTTTTAACGTTTCTAACATTTGACATCTGAA
TCGAAACATTTTTGGAAACATCACGTAATGAAGAGGGTTTTCCTTGTTAT
CTCCAAGCATTGAACGAAGGTTGGTCCCCAGTCTTCATGCTTGAATCATC
TCCTGCTAAAACATCTCCATCAATAGAAGCTGCATATGCTGAACGTTCTA
AAAGTACAATGTAGAAAAGATATTAGTTCATTGTCAAAAAAGGTGTATAA
TAAAATGGGAAGAAGAATGTGCCACTGGAAGAGAACCTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00064190TCONS_00064190Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00064190-proteinTCONS_00064190-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:782424..786012 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07	0.07	0.17	0	0.04	0.13	0.31	0.19	0.11	0.14	0.03	0.02	0.12	0	0.04	0.04	6.27	5.18	0.07	0.03	152.85	148.66	27.67	33.8	37.08	31.62	0.22	0.58	0	0.04