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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064190 ID=TCONS_00064190|Name=TCONS_00064190|organism=Clytia hemisphaerica|type=transcript|length=2533bp
GTAGAATGTCAACCTCGTATATCAATCAgcattttatcaattttcaaact
taaagaTGTGGTTGAATCAATAGAGACCGTTTCACACGGTCTACAAAGAA
TCTGTCTTGAAAATTTATAACGAGACAAAATAATGAGCGAGCGAGTAAAC
AAAGTTGAAGCGTTGACGAGAAATAAATTGTTATTTGATTTTACTTCAAT
ATTAAACACAGGAGAAGAAAGTGACGACGAGATAAAGTAAATGATGTATG
AAACCCAAAGCCAACAAACAGTCTTAAAGGTGATTACAGCCGCTGTGGTT
TTATTAACGAGTTTGGTGTGGGCTACATTATAAATACAGTACAAGTTTAT
GAAATCTCGTTCAAAACTTACTTGCATAAGAGAAGAGAGGtcacaaaaga
aatatttcaggaagaggaaaaatttttgagaatatCTTTACTACTTGAAT
TGACTTGAATAGGGATTTGATGTTATGAAAATGTGGAGACTTCTAATATC
TGTGGTATTATGTGTTGGCGTGGTGGAGGCAAATGTTATTGATAGTCTGT
GGAAAAGACTTCAAGCAATGAACAGAGGGATTGTTTTTGTTGAACCTACA
TACCCACCACCAACACGAGTTTGTGGAAACGATTACGAATGCTCACACAA
AGAAACGTGCAATGCTTATACCAAGAATTGTGAAGGGTGTAAATTACGTG
GTGAACTGTGTAGGCGAAGTGGAAATTGCTGCAATGAAGACTTACGTTGT
ATATGGGGCAAGTGTATTGATCCTTTGAAGACGGATGGTAAGAAAAACCA
CAGATGTTACAACCAGAAAGATTGTCGACCAGGATTCTGTTGTGCCAAAT
ATGAAGGTGAAAGTGTTTGTCGTCCATTGTTGTTGGAAGGAGATTCATGT
GAGGTTCCACCAGGAGGAATTTCTTTTACCATCAATCATAAATGTCCTTG
TGGTAAAGGGTTAAGATGCCAAGCTAAAAGTACTGTGAGGAAACATGATT
TGAGATGTGCCTATACGAACGCAACATGGACGTCGTATAAATGAAGAAAT
GTGGATGAGATCAATCAAAAGACCCAGAACGGATTCGATGATGAAAAACT
GGAAATTACACAAACTATTTATCTTATGAATAAGAATCGAATAATTTAGA
AAACCAAAAGCATTTATGAGAATGAATACAACAATGATGATGTGAGTGTT
TAGAGAGAGTTCTATCTAGATTGtttgaagaaaatcaaatcatcagaaaa
tcaaactcaaatttggaAATGGGTACCTCGAAAAGTTTCGCTTTATCAAA
TGACATTTCCATAGATAtaaaaagcccgaagggctagatgtcgtgctttg
gttGAAAAGTGTGCAGTGGttcctaggtcacgtgacattacaatagaatt
tcagctcttgaccaatcagaagcttcacgggttttcgaaaacaatagaaa
cagTATTTTTGGCCtgtgatggcttaaagcacgacatctagccctttggg
ctttataaatctgtgggcATTTCATCTGAAGAGAAAAGTGtaagcaaaat
ttgaatatgaattaTACGAAAAACAGGAtcttaaaaattctaaaaactaT
TCTACAACATTGTATcataataaagaaaataatatataatcCACCTTTTA
ACTTAAAAAACCATACTTAAATTTAATAAATATTATATAAAccaaattat
atattatatttacttttttatacaACGTATgtaacagtttgaaaaatctt
ttaaaaacataTCAAGTCATTTTAATATCATCGTCTATTGATTTAATAAG
TTTGTGTCAGATTAAATTCgtgatttttgaccttttttctaCAAACACTA
CTAGCATATAAGTTGAAAGAGAAGTGAAATAAAGTCAACCCATTGGTTAG
AATTGAAGTCCCAAAAATAAGCCAATGGAATgctttcacttcgtttcgaa
agaTCAAGACTAATAATGGACCTTCATGTTTTACTTCAACAAATTGATAC
ATATAACAATTCATTGCATCAGTAACTGCCCGCGTTATTGAAGAACGAAG
ACAAACATCTGCATTTGTTTGGGGTGATTTATTTCGTCAATATAGAATAC
AAGAACCCGGTATACCTTGTCAAACAGCGACCATTCTTGACCATAACATT
CATTTATATCAAGTCTTCAAATCTGTGTAGAAATAGTACCAAAGTCTATG
CTCATTGAGAATCTAAGAGTTACATTTATAAATTTTTCGACCATTTTTTT
CTGAATCCAGTAATTTTTAACGTTTCTAACATTTGACATCTGAATCGAAA
CATTTTTGGAAACATCACGTAATGAAGAGGGTTTTCCTTGTTATCTCCAA
GCATTGAACGAAGGTTGGTCCCCAGTCTTCATGCTTGAATCATCTCCTGC
TAAAACATCTCCATCAATAGAAGCTGCATATGCTGAACGTTCTAAAAGTA
CAATGTAGAAAAGATATTAGTTCATTGTCAAAAAAGGTGTATAATAAAAT
GGGAAGAAGAATGTGCCACTGGAAGAGAACCTT Run BLAST on NCBI protein sequence of TCONS_00064190-protein >TCONS_00064190-protein ID=TCONS_00064190-protein|Name=TCONS_00064190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKMWRLLISVVLCVGVVEANVIDSLWKRLQAMNRGIVFVEPTYPPPTRVC
GNDYECSHKETCNAYTKNCEGCKLRGELCRRSGNCCNEDLRCIWGKCIDP
LKTDGKKNHRCYNQKDCRPGFCCAKYEGESVCRPLLLEGDSCEVPPGGIS
FTINHKCPCGKGLRCQAKSTVRKHDLRCAYTNATWTSYK Run BLAST on NCBI transcript from alignment at scaffold_41:782424..786012+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064190 ID=TCONS_00064190|Name=TCONS_00064190|organism=Clytia hemisphaerica|type=transcript|length=3589bp|location=Sequence derived from alignment at scaffold_41:782424..786012+ (Clytia hemisphaerica)
GTAGAATGTCAACCTCGTATATCAATCAgcattttatcaattttcaaact
taaagaTGTGGTTGAATCAATAGAGACCGTTTCACACGGTCTACAAAGAA
TCTGTCTTGAAAATTTATAACGAGACAAAATAATGAGCGAGCGAGTAAAC
AAAGTTGAAGCGTTGACGAGAAATAAATTGTTATTTGATTTTACTTCAAT
ATTAAACACAGGAGAAGAAAGTGACGACGAGATAAAGTAAATGATGTATG
AAACCCAAAGCCAACAAACAGTCTTAAAGGTGATTACAGCCGCTGTGGTT
TTATTAACGAGTTTGGTGTGGGCTACATTATAAATACAGTACAAGTTTAT
GAAATCTCGTTCAAAACTTACTTGCATAAGAGAAGAGAGGtcacaaaaga
aatatttcaggaagaggaaaaatttttgagaatatCTTTACTACTTGAAT
TGACTTGAATAGGGATTTGATGTTATGAAAATGTGGAGACTTCTAATATC
TGTGGTATTATGTGTTGGCGTGGTGGAGGCAAATGTTATTGATAGTCTGT
GGAAAAGACTTCAAGCAATGAACAGAGGGATTGTTTTTGTTGAACCTACA
TACCCACCACCAGTAAGTTCAATATGTCAAtttctcaaaagaaaaactgc
tAGCTAGGTAGACTAGGACCGtttttaatttatgcaataCCAGTTTGTAT
AAATTACAATTTTGTCCCTTCCATtactttttacttattttttactatgt
ctgaattagttgACTAATATGCTAGATTATAGCTAGGCTATTGACATCCT
CAAATGAATTCATCCAATTTTTCCTGAGATGTACGATCTACTAGGTCTAG
ATTTGTGTACAATTATATAAAGTTAATGTAAGCTCACCATTACGTATTTA
CGAAGACCTTCAAATTAAATCTAAAGAGAAGAGCTGCGCTCGGATATTCT
TTTTATAATTTCTGTTGTATTATGTAACTTTTAAatctttaactttttta
ttcgatAATTTTCCTTTggatattttcattattttgttagTAGGCTAGTA
GTGTGATCTTGactgttaaagaaaagatttttgaaatcgAACCCAGTTTT
ATCGAACTGATAATTCGCAAATAGtgggcaaaaaaatttaaaatgaaagt
caGTTGTCAAAACGAGTcggaattgcaaaaaaaaaactcagtGTTTAAGA
CGACCCGATGACCTGTTAAAGTAAAACCCTTCTCATCCATGTTAAAGAAT
TCTTCAGGTGGATCAGCTATACAGGATAATAGGATTTTTCAGTTCATTAC
ATAACTTAATTCTATTAACTTTTAGACACGAGTTTGTGGAAACGATTACG
AATGCTCACACAAAGAAACGTGCAATGCTTATACCAAGAATTGTGAAGGG
TGTAAATTACGTGGTGAACTGTGTAGGCGAAGTGGAAATTGCTGCAATGA
AGACTTACGTTGTATATGGGGCAAGTGTATTGATCCTTTGAAGACGGATG
GTAAGAAAAACCACAGATGTTACAACCAGAAAGATTGTCGACCAGGATTC
TGTTGTGCCAAATATGAAGGTGAAAGTGTTTGTCGTCCATTGTTGTTGGA
AGGAGATTCATGTGAGGTTCCACCAGGAGGAATTTCTTTTACCATCAATC
ATAAATGTCCTTGTGGTAAAGGGTTAAGATGCCAAGCTAAAAGGTAAGTT
TGTTTGATGTTTGTTAGTGGTTAAAATGTTTAGAGTGGGTTACTATCCAA
TTCGAATGTCCACAAAGTTGAGGACTCATTGGAACAGCTAGCTTGGGTTG
TGTTAAACCGAGGATTCAGATACTTGGGTATTACTTCTAGCGAGTGGAGT
TAATTTTAACTTAAATACTCTGTTGATTTGCAATGGTTgactttaaattt
ttcttcaaaacaaatCAAGTTGTTACTTTAACCGATAAAGAGAAACTAAA
AAATTAGTCCCTAAAATGTTGAATCGTTGCTTTCAATAATAAAATGAGAC
TTAGAGATACATGATTGTTTTATCCTTTGATTTCAGTACTGTGAGGAAAC
ATGATTTGAGATGTGCCTATACGAACGCAACATGGACGTCGTATAAATGA
AGAAATGTGGATGAGATCAATCAAAAGACCCAGAACGGATTCGATGATGA
AAAACTGGAAATTACACAAACTATTTATCTTATGAATAAGAATCGAATAA
TTTAGAAAACCAAAAGCATTTATGAGAATGAATACAACAATGATGATGTG
AGTGTTTAGAGAGAGTTCTATCTAGATTGtttgaagaaaatcaaatcatc
agaaaatcaaactcaaatttggaAATGGGTACCTCGAAAAGTTTCGCTTT
ATCAAATGACATTTCCATAGATAtaaaaagcccgaagggctagatgtcgt
gctttggttGAAAAGTGTGCAGTGGttcctaggtcacgtgacattacaat
agaatttcagctcttgaccaatcagaagcttcacgggttttcgaaaacaa
tagaaacagTATTTTTGGCCtgtgatggcttaaagcacgacatctagccc
tttgggctttataaatctgtgggcATTTCATCTGAAGAGAAAAGTGtaag
caaaatttgaatatgaattaTACGAAAAACAGGAtcttaaaaattctaaa
aactaTTCTACAACATTGTATcataataaagaaaataatatataatcCAC
CTTTTAACTTAAAAAACCATACTTAAATTTAATAAATATTATATAAAcca
aattatatattatatttacttttttatacaACGTATgtaacagtttgaaa
aatcttttaaaaacataTCAAGTCATTTTAATATCATCGTCTATTGATTT
AATAAGTTTGTGTCAGATTAAATTCgtgatttttgaccttttttctaCAA
ACACTACTAGCATATAAGTTGAAAGAGAAGTGAAATAAAGTCAACCCATT
GGTTAGAATTGAAGTCCCAAAAATAAGCCAATGGAATgctttcacttcgt
ttcgaaagaTCAAGACTAATAATGGACCTTCATGTTTTACTTCAACAAAT
TGATACATATAACAATTCATTGCATCAGTAACTGCCCGCGTTATTGAAGA
ACGAAGACAAACATCTGCATTTGTTTGGGGTGATTTATTTCGTCAATATA
GAATACAAGAACCCGGTATACCTTGTCAAACAGCGACCATTCTTGACCAT
AACATTCATTTATATCAAGTCTTCAAATCTGTGTAGAAATAGTACCAAAG
TCTATGCTCATTGAGAATCTAAGAGTTACATTTATAAATTTTTCGACCAT
TTTTTTCTGAATCCAGTAATTTTTAACGTTTCTAACATTTGACATCTGAA
TCGAAACATTTTTGGAAACATCACGTAATGAAGAGGGTTTTCCTTGTTAT
CTCCAAGCATTGAACGAAGGTTGGTCCCCAGTCTTCATGCTTGAATCATC
TCCTGCTAAAACATCTCCATCAATAGAAGCTGCATATGCTGAACGTTCTA
AAAGTACAATGTAGAAAAGATATTAGTTCATTGTCAAAAAAGGTGTATAA
TAAAATGGGAAGAAGAATGTGCCACTGGAAGAGAACCTT Coding sequence (CDS) from alignment at scaffold_41:782424..786012+ >TCONS_00064190 ID=TCONS_00064190|Name=TCONS_00064190|organism=Clytia hemisphaerica|type=CDS|length=1710bp|location=Sequence derived from alignment at scaffold_41:782424..786012+ (Clytia hemisphaerica)
ATGAAAATGTGGAGACTTCTAATATCTGTGGTATTATGTGTTGGCGTGGT
GGAGGCAAATGTTATTGATAGTCTGTGGAAAAGACTTCAAGCAATGAACA
GAGGGATTGTTTTTGTTGAACCTACATACCCACCACCAACACGAGTTTGT
GGAAACGATTACGAATGCTCACACAAAGAAACGTGCAATGCTTATACCAA
GAATTGTGAAGGGTGTAAATTACGTGGTGAACTGTGTAGGCGAAGTGGAA
ATTGCTGCAATGAAGACTTACGTTGTATATGGGGCAAGTGTATTGATCCT
TTGAAGACGGATGGTAAGAAAAACCACAGATGTTACAACCAGAAAGATTG
TCGACCAGGATTCTGTTGTGCCAAATATGAAGGTGAAAGTGTTTGTCGTC
CATTGTTGTTGGAAGGAGATTCATGTGAGGTTCCACCAGGAGGAATTTCT
TTTACCATCAATCATAAATGTCCTTGTGGTAAAGGGTTAAGATGCCAAGC
TAAAAGTACTGTGAGGAAACATGATTTGAGATGTGCCTATACGAACGCAA
CATGGACGTCGTATAAATGAATGAAAATGTGGAGACTTCTAATATCTGTG
GTATTATGTGTTGGCGTGGTGGAGGCAAATGTTATTGATAGTCTGTGGAA
AAGACTTCAAGCAATGAACAGAGGGATTGTTTTTGTTGAACCTACATACC
CACCACCAACACGAGTTTGTGGAAACGATTACGAATGCTCACACAAAGAA
ACGTGCAATGCTTATACCAAGAATTGTGAAGGGTGTAAATTACGTGGTGA
ACTGTGTAGGCGAAGTGGAAATTGCTGCAATGAAGACTTACGTTGTATAT
GGGGCAAGTGTATTGATCCTTTGAAGACGGATGGTAAGAAAAACCACAGA
TGTTACAACCAGAAAGATTGTCGACCAGGATTCTGTTGTGCCAAATATGA
AGGTGAAAGTGTTTGTCGTCCATTGTTGTTGGAAGGAGATTCATGTGAGG
TTCCACCAGGAGGAATTTCTTTTACCATCAATCATAAATGTCCTTGTGGT
AAAGGGTTAAGATGCCAAGCTAAAAGTACTGTGAGGAAACATGATTTGAG
ATGTGCCTATACGAACGCAACATGGACGTCGTATAAATGAATGAAAATGT
GGAGACTTCTAATATCTGTGGTATTATGTGTTGGCGTGGTGGAGGCAAAT
GTTATTGATAGTCTGTGGAAAAGACTTCAAGCAATGAACAGAGGGATTGT
TTTTGTTGAACCTACATACCCACCACCAACACGAGTTTGTGGAAACGATT
ACGAATGCTCACACAAAGAAACGTGCAATGCTTATACCAAGAATTGTGAA
GGGTGTAAATTACGTGGTGAACTGTGTAGGCGAAGTGGAAATTGCTGCAA
TGAAGACTTACGTTGTATATGGGGCAAGTGTATTGATCCTTTGAAGACGG
ATGGTAAGAAAAACCACAGATGTTACAACCAGAAAGATTGTCGACCAGGA
TTCTGTTGTGCCAAATATGAAGGTGAAAGTGTTTGTCGTCCATTGTTGTT
GGAAGGAGATTCATGTGAGGTTCCACCAGGAGGAATTTCTTTTACCATCA
ATCATAAATGTCCTTGTGGTAAAGGGTTAAGATGCCAAGCTAAAAGTACT
GTGAGGAAACATGATTTGAGATGTGCCTATACGAACGCAACATGGACGTC
GTATAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00064190-exon-scaffold_41-1491911889:782424..783035 | TCONS_00064190-exon-scaffold_41-1491911889:782424..783035 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1510915933:782424..783035 | TCONS_00064190-exon-scaffold_41-1510915933:782424..783035 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1575043694:782424..783035 | TCONS_00064190-exon-scaffold_41-1575043694:782424..783035 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1491911889:783749..784116 | TCONS_00064190-exon-scaffold_41-1491911889:783749..784116 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1510915933:783749..784116 | TCONS_00064190-exon-scaffold_41-1510915933:783749..784116 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1575043694:783749..784116 | TCONS_00064190-exon-scaffold_41-1575043694:783749..784116 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1491911889:784460..786012 | TCONS_00064190-exon-scaffold_41-1491911889:784460..786012 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1510915933:784460..786012 | TCONS_00064190-exon-scaffold_41-1510915933:784460..786012 | Clytia hemisphaerica | exon |
| TCONS_00064190-exon-scaffold_41-1575043694:784460..786012 | TCONS_00064190-exon-scaffold_41-1575043694:784460..786012 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:782424..786012 + |
Blast
The following BLAST results are available for this feature:
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