XLOC_039420 (gene) - C. hemisphaerica

Overview
NameXLOC_039420
Unique NameXLOC_039420
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_374:53347..60019-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_039420 ID=XLOC_039420|Name=XLOC_039420|organism=Clytia hemisphaerica|type=gene|length=6673bp|location=Sequence derived from alignment at scaffold_374:53347..60019- (Clytia hemisphaerica)
CCTAACTAGAAATTGACTCATTCCTGCTTTACGATCGATGGTGCTTTCTG TCGAAAAGGACTACTACTTCAAAGGACAAAATTCTTCAAGGTATTTAGTT TTTATCTAATCTCGAAAGATATTTTCTTGAAATACACCTACAATAAAGGT CATAATATTTTGATAATTTTGGTTATTTTAACGTTTTTCATAATTTAAAG TTCCGGCGAGAAAGTCGATTTTGGGCTATCTCTTTAATTTAATCGAATAT TTCAATTCGGAAGGGGTTGGCAGACTTACAGGCTATATTTTGAGCCTTAT TGGACTATTTTTGAACTTTTGGATCCACAGATCCTAAGGTCCTAAGGCTT AAGTCTCATGTTAAAACTCAAAGTTAAAACTCTACCCTTCAAACCTACTT TAGAGCACTTACAAATCGCTTGTGGTTCAAAAACTTCCCGGTGTATTTCC CTTTTTTCTCAAATATTATGACCTTGATTGTACCTTCTCACAGACCCGGT AGGTTTTTTTAGCCAGTGGGGATGAAAATAACGGGTGGAGATTGATGCTA CCAATATTTTTTATGGCTGGAGATTTCAATTCTTTTGTTTATTTCAAGTC AGAAAATTCAGTGGGGGGTGGGGAAAATAGCATAATCTTTTGCAGTGAGT ACACGTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTTAATTTTTCAGACTAC TCTAAATCGACAATATGATACAAAATAAAGAGCACTTAAATTTGACAAAA TTTGGACAATATTTGACTCTCGACTTTTGAAGATCCACCCCTAAATTTGG TTAAAACTGCTTAAAAAGAGGAAAAAATTGTAGTTTCTTGTCATTTTTTT CCAAACTGAGGCTAGGCATGTTCTTAAGATGTTCTTAATTTTTCGACGAA TTTCAGCCTCTTATAAACTAGGTTCTAATAAAAAAAAAAACGTGTATTGC TTTAAGTATTTGATTGTTTTCAGTGAGGACAAAAGTTGAAGGATGATTTT CCACCGGGGGCGATATTAAAAAAATTCCAATGGGAATGGGTCCCAGTGGG TCTGTGATAAGGGGGTGTTGAAATAGAAATTTAGTCCAAAAAATTTTAGC TTTCAAGTGGATTTATTTTATTTTTTTTATAATTATTTATTACCGTCAAC ACCATAGTTTAGCTTTCTCTAAAATTAAGCTATGGAGACAAAATGCAAGA ATTCTATTGCGCATGTCAACCACATTAATTTCCAAAGAATACACGGGTTG CAAAATTATATCGATGCAGTCAGAACATGTGATTACTCGAAAAAGTTCAC GTGATTTTATTCCCATGTTACTTGCTTTGCAACTTACAATTAATTACTTT ATTAGTGTCAATAAATTCGAACCTATCGGGAATATATGTCATGTAACAAA GCACATAGAAATTTCGAGTAAAAGCTTGACTGTTTCTTCAGAATTTAATT TAGCAACCTGTGTATCGAAGATGGGCACATATGCTCATGTAGATTAAATA TTCGATTACAATCCCATGAAAATACACGTTATTTTATAAGAAAATACAAA ATTTTTGAAGCCTTCAGATCTTCTTAACTTTTTGAGTTTTAAGCCTAAAA ATGTTCTTAACATGTTCTTATTTTCACCATTTTTCGAGCTTTTTTGCCCA TTTTGCTAAGAAATCGGGTGTTTTAGAGTCTGTAAAGCGTTAGAATGTTC TTAACTTGTCTATTCACACTTTGGCCATCGAAGCCTTTTTATGTTCTTAT ATAGTTTGTTCTTATAAAAGTACGTGTAAATTCCTGCCAAATTTTTTTTC ACCTTTCAAGGAAGAATTCAGGCAATAAATGATATCTATAAAATTTGATA TTTTTAATCCTAGCTGTCTTCCATATATCAGACACATTTCAAAATTTCGA AAGTTTTAACTATAATAATTAATAAACTGAAAATTGAAAGATGAAGATGA AAAAAACTGAAGATTTTTCTAACTTATTGAAAATTTATGATTTTTAACAC CCGTCTCACAGCTCCGGTATAACTTCTGGGGGGACTGACCTTGACATCCG ACAGGGCATACCACTGTCGATTGGAAAACGAACCCTGTCAGATATGAACG CTTGGTAAATTAGGTAACGGGGGTAGGGGGAGGTTGGTAACCTGTCACAA AACAAAACAAAAAGTCGAATTATTTCCCATTCTCACCCTAAAAATTGGCA AAAATGACTAAAAGTAGACGAAAAATTATTGGCTTTTAAAATGTAAACCT TGAAAGTTGCCCAAAATACTTAAGAGTTGACCATGTCAGATACATATCTT GAAATAATTAACCAACAAGTAAGAAAACAAATGTTGAGATACAGTCTCTA TACATAAGTAGAACTTTTCAATATATTTCAATTTGTTAAAATTAAAATAT ATTGAAACCCCTGTATTTGAGTTATTTTTAGAGCCTACCTTATTGGAACT AATTTTCGCAGGTTTTAATTTTAGCGTTTTTCGCGGTTTTTCGTCAAAAT CGCGAAAATTTGATCCCGCGAACAATTTTGAGAGTTGAAAACCGCGAAAA TTAATTCCCGCAAAATACAATTTTTTCCAATTTTATCGAAAAATTTGAAA AATCCCTAGGAAAATGAAAGAAATTTTTCCAAAAAAGGGCAAAACCGCGA AAATTAAAACCCGCCAAAATTCCAGAATGGAAAAAACCGTGAAGATTAAA ACCCGCGAAGTGCAATTTTTCGGATATTTTTTTTCGACCACGAATATTAG TTCCCGCGAAAATTAGTTCCAATAAGGTAAAAGTGGGACAAGAAACCATC AGCGTCGGCAGCACGTCCCCTTATCCAATCTCTTCTCAGGGCCCAGCAAC GTCACTCATCCCGGGAGCTTTTACTAAAATCCCGATGGGGATAAAAATTC TACTCAGCAGGGATGGTTTTAGAAGTGCAGACTTATTTCAAATGGGATCA AAGCAAAGTCAATTCCCCAGTGAGGCTGAAAATAAAGGGTATTCCTCCCC CAGGGACTAAATTTTGGCTAAGACTTCCAGTGGGGACGGGATCCCATCAG GTCTGTGACACAGGCCTCCAAAAAAGGTGCAAACCGGTAATAGCTTTATA AAAATAATCAATACTTTTGTGACTTTTGATTTTTGAACCAAAAGAGATAA GATAGGAAAAATCATCATTTGAAATTTTTGGATTTAACGCAGGTTAAATC GCGGTTTAAGTGATAAGCACTACAGTATTGGAATGACTAGGTGGCCACCC TCCGCCAACTGAGTCTATTTTACTAATGAGCCACGTGACGTCATGTTCAT AATGGCCATCACAACTCCCTCTTCCTCCCTGCAGTTATGGTTGAAGGTGA TCCTCCCTTATTTATACTAATATTGTATTTATCGGGACAATTTTTCCCCA AGACTTCTTATTCGAGGATTAGATATCTAGGTGATAGTCAAATTAACAGT TAAAATTGAGCTTTAACGTTTCCGAATAAAGTATATATCTAGGAAAAATC TTCTTTTTCATCTTCATGTTCAATTTTTTCAATCAATCTAATCGAAATCA TCCCAGCTGGCACACAACGTTGTTTTAACGTTCACCTAACGTTATATGGA CGTTGTGAACGTTAGATAAACGTTGAAAAAACGTTGTGTGCCAACTGGGA TCTTTTCAACGAGGTACTTTCAACATTAATCTCAAGAGCAATCGAAAAGG AACGGAATATTTTTGGAATAAACTTTAAATTGAATTTCTTTTTATTTACA ATTATAGAATATGGATGGCGGAAAAATTGCTTCACTTATAATTTCACTAT GCGCCTTTCTTTTCATAACAATGAGTATGGCTGGACCTGAGTGGTCGATA AGATACGGTCATAACGATGATAAGGTGGGCTATTCAGGGCTATGGAGAGC ATGCAGCCGAATTTACACAACTATGACAGCTTACACAACTCAATGTAAAT CTATAGATGACGCACCAAGACAACAATTCAAAGGAGCAACCTATTTTAGG GCAACTCGTGCATTTATGTGTTTGGCCTTCATATCAAGTCTGTTTGGTGT TGTATTATCTGGATTGCATATTAAGTTCATGCAAATTAATTATAAGCACT TGGTTTTCAACCAATCCATCACAGCTTTTTGTGCAATAACTGGTCTTTCA ATCTATTCATCATTAGAAGAGGATAGCATAAAATCAACAGCGGGATACGA GTTAGGCTGGTCATATGCGCTTGGTTGGGTCGGAGTATTTTTCACCTTCC TCTCGGTAGGAATCATACAGATATGGCCACATATTTGTGATTGTCAATTC CAGTGTGATTGTACACAAGTTCCGGCACAACCAAATGTACAAAATGATCT GCAACCCAGTCTACAAAGTGCCAGTCATTACGGCAACATGCCACCACCTT ATATCAGTGGAAAAGAATCAGGAGAAGGTCAGGTTAATATCGCGGTTAAT GCTGATAATCCAGAAAAGCAAAATCTTGAAGGCGCCATGGCATAAAAAAG GCCGACAAAATAGTAAGATTGTGTTCAATAGTTCTATTTATACTGAGACA GTTAATTTGTCTGAGACGAGCAATTTAGAAAATGAGAATTATGGAGGAGT GTACTTTCCATTCATGTTTCAATAGATAGGATCTCCTCCAAAGATCACAT TTTATAAATTACTCGTCTCAGACGATTTTTCCGTCTCAGTATAAATGGAA CTAATGTAATACAAAACAGCATGGTACAGCAATTTAATTTAGCTTGTATA GTTACACATCATTTCATTTTTTTGTAAATCTTGAAAAACGCCACTTTAGG CGTACAACATTTCCCAAGCAGAAAGAATGCAAGGAAAAAATCTTTTTCAC GAGCGTTCACGAGCATAAACTTCCACAAATCAAAACTTTCATCGAACATT TTCAAACAAACAAATAGCTTAGAGAGACAAATACTTCTTGAATTAGATTG AGTCTTTTGACTTGAACCTTTTACCAGATTTTCTATTTTGTCAAAAGTTT TTCACAAGCATAAACTTTCGCAAATAGCCCTGGACGAAAGGATTTGCGAA TACATTAACTTTCGGAAAAAGGATAAAACTCGAAAAAATTGCGAAAGTTT CTACTTGCGAAAATTTTCAATCTCGTATCAGGGCCAATTGCACAACTTTT TGATTTTACTGACTGACAATGGTACAATCGTTGGTATCTTTTGTGAGCGC TATCAGTTCTATAAAAAAGAGCAAATAGGCTATTCCACAGTCAAAATGGA TCATGGGTTATCAGGACTGATTGCGCCTAGATAACGGTTTCCCTCTTCAA AAAATTTCAAACTTTGGACCAATAGTAAGTCGTCTTTAGCACGCAGTGGT CCTGATTACCCATTACGCTTTGCGACTGTGAAATGGCCTATTAGGGGACT GGGTTCGACTTTGGAAAGTTTGTACGCCTCCATTGCTCCGAATGTCAACT TTACTATTGAGTTTTCAGAAAGTTTAAGATAACAAATAAAAGAACAATTT TACTTTTAATTTCCCCTGTTACTTTCTCAACCATTTTGATTTATCATATT TGCAGGTTAGTTCTTTTGTTTATACTTTTGCTACCATTTTGCTAGATCCA AACCATTTCTTGTACATATACTATTTTTAAACTATTTCAAGCACATTTAT GATGACATTAATATTTTACCTAACTAAAACGAATCAGACTTCAACACTTA ACTCGGGTGGGGAGGGGGTGTGATATTTAGGCTAATGGAGGGTACGTGTA TGTGCTGCCCTTAAAAGTACCTTTTCAAACTTCCAAAGTCCCACGTAGTG TCAGAAAAATAGAAAAATTTCAGCTTTTTGCTCTTAAAAAGTCCGAAATT TGGTCAAATTAGTCTCAACAAGGGTCGTAAAATTAACAATTTTTTCCCCT TTTTTCTCCTTTTTAATCTCTATAAGGGTTTCGAGGGTCAAAAGTTGGGA GGCACATAAGTACCTGTCAGCTCGCAACCCTAATACCCTCTGGGCACTTA ACATTAAAACATTCATTTTTAGTCTTCCATTCCAGCTATCATTTCCCGAT TCTAGTATGTCTTTATGATGTTTTATCTTTTGTATTGCGTTTTACCCGCC AAGGTCAGGGACATAAATGACCAGTATTTTTCATGAATCATATTCACGAT TCGACTTATAATTAGCCCATACTTTAGCCTTATTTAAATGTACTTATTTA TTAATTTGTATATTTTGCACTGTTATTCGTAATACACCATTTGTATCTTT TTTTTCCGTTTGAATTTTATGATTAAACACTAATTAATCACTTCAGAAAC GCTATGTATATTTATTCGAACACCAATGGCTACAACCCGTGTCTCGATGC CCCGGTGGAACTTTTCTGTCTTAGTGTGAATCCAAATAGGCGATAAAAAA AACGATTTTTGCACCTTCCAATTCAATTTCCAATGAGCATTTCCCAGTGT GAGGTATTTTTCCAGCGGCGAGGATTTTTCGGACAAGTGTGGGCTCAAAA GGGTCTGTGACACGGGGTGTAGG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00062931TCONS_00062931Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00062931-proteinTCONS_00062931-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_374supercontigscaffold_374:53347..60019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03 0.04 0.09 0.06 0.1 0.25 0.19 0.11 0.02 0.08 0.04 0.09 35.47 27.79 0.02 0.27 0.07 0.03 80.42 65.96 0.23 0.23 0.02 0.05 0.06 0.12 0.02 0.04 0.05 0.09