XLOC_038811 (gene) - C. hemisphaerica

Overview
NameXLOC_038811
Unique NameXLOC_038811
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_361:457242..466225+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038811 ID=XLOC_038811|Name=XLOC_038811|organism=Clytia hemisphaerica|type=gene|length=8984bp|location=Sequence derived from alignment at scaffold_361:457242..466225+ (Clytia hemisphaerica)
GTACATGATTTAAATAACACGTTGGGGTAAAATCAGTGAATTGAGGTAGG
TTATCATTGAGTTCGATCAGTCAGTTATGCTAGCTATGAATGACTTTAGA
ATCAATCTTTTGAATTCTAATAGAAAATATCGAACCAAAATGATAGGCTG
ATAAGTCGtacagaaaaaatataaaactttgtAACTTTTTCTCTCAGAAA
GGGGAGTGCCTTGTTCAAACTTTCAGTATGAtcataatttcttttgaatt
caCGGATAAAATTATCGANGATTATTTTTGCCAAAGGAAAAACGATAAGC
CCagaaacagattttttttcaaatagcaGGTAAAAAATAGATGTGTACCC
TTAAACAGTTTTCTGTACCTTATTAAGGAGTGATGGCCAAGTTCAAATCC
TCGCTCCTCCAATATTCCGTTCAGTNTATGAtcataatttcttttgaatt
caCGGATAAAATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTT
TTAGTCAAATTCTCTTCGGAGAATATTTCATGGtttaagaaatctcaaaa
tctgCTTGCTTATAGTGCACTGATCTGACCACGTGCCAAATTCTGCATAG
TTTTAAGACTTTTATGAATaatgataatatttttcaatttcaggctcaaa
tttTTGTAGAGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAAT
CTACCGAAGATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTN
TTCATAAATTGGAAGACTTAACTAAAAGTCCTATCTGGGCTGGGTTATcg
acgtaaaatatcgactctatctatttATATCTTTCAGTACCGTCGgaagt
tttggaacaaaaacatTCTTATTATTGGGGAACGCGACAGCAATTATTAT
TTGGTAAAGTCGTCGCTGATTGGCTCCCTGAGCATATCAAGTCCAAAACT
TCACCTATGGACCCGATCTTTGGTACCCTGTTGAACCCTACAGGGGGTAA
GTGAATGATGATGAATAACAGCTTACCTTGTTAAGTGCTTGGGCAGCCAC
GTTGCAAATGGGTCATCAGAGTTGAGAATGTGTTCCGCTTCGGGGCCTTC
CTCTAAAATCTAAGAAGCACTTATCAGCTCACAATATTAAATATAACTGT
TGGAGATTGGACTGAGAaagtttttagttttaattttatTCCGTTAAAGG
ACCTTTATCCCAAGAATTCATTAATGAAAggtttaaatttcattttttct
aatgAACTGATCATTTTTGTTAGAATCTGGTAAATTTCGGTTGAGTTTCT
GTGATTATTATTTGTCCtgatattgggctcttccagaaaatgttcgtaca
tgggggtcGAGGATATATCGTCCGGGGGATAGTaaaaaatctaacaaaat
ttgccttgtccgggggtaaatttctctgtttgggggtaatttgctctgtt
tgagtGTAATTTTTAATGTCCAGGtagtcaactgatgcttgtccataAGT
GGGGGGTTAGGCCTGGAGGTTAGACCTgctgcccgggggggggggcactg
aagggaaatgacctaccagacgttcggcccttaaggggaggtttttcata
gttcagctagtgcactgtaagggtaggaaattgtgataaaaggccaattt
tttggtaaaattggcacaaaattggtcaattttggaggaaaaatttcaca
ttttcatggaaaattgcaaaaaaattcgCCCTTACGggtgagaaattttc
aaaaagtgcactgtaagggtatgatttttcatgtaaattcactgcactgt
aagggtccgattttagaagccaaattttgggccgaacgtatggtcgcttt
cagatcgagtgcccccccccccacggCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTGGGACCTTTTGCATATCA
TTCAGCTGTTCATGATGGTTTCGGatatttgaaaacaaaccatAATTCTG
GTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGCGATTGGAGTCCA
TTCGGTGGACAATTATTTGGTATTCGATTCTGGAGAGAAACTTGTGACAG
GCTTAAGCCAAAGGAAGCAACCGAGGAAATGTTTATTTTAAAATAGTTTT
ATGATAtctaataatttatttttttcaaataatttcgtGATACACATATA
TACAAATTTCTGGATATAAATTTGACTGATTTGGTTATTTAGTAGAGAAT
TGTTTTATAGGGGTTTAATCGgtgtaaaaaaatgtaaaatctaGAAATAA
AAGACTAGAGTTAATAAATTGACCAAAGTTAGGTAATTGACAGGAACTTC
GAATAATTTTACTTCCTTGTCAGTCGGTACCACTACAtgtatttcccgaa
cgggaagtatttcccgaacgggaaggtgaaaataaatcgaaaaggaaact
gtttccagattgaaaatttcatcactttctgtttcccgttttgtcaagaa
cttttcatcgtCCCCGACGGGAAatagaatttttgtaaacaaagcagatt
taGTAAAGCGGGTAGCAAACATTACGCCATAAGTGCGAGACTTAAAAGAC
TAAATTTTGACGCTGCAGAAATGAAGTTTTTCCAACGGATAAGATTCGAT
GGGAGTCGGTATTTTAGACAATGATTTTTATATCAATTAATATATCAATT
GATATAAAAACAGAAACCATtttatataaaaagtaaaaacccAAATAAGT
AAAAAACCAAATAAGCAATAACAAAGCGTTTGAATGAAAAGAGATTATAA
AATTTAATACTGTTATAGCAAGAAAAGGTAAACCTAGTTTCGTACATGAT
TTAAATAACACGTTGGGGTAAAATCAGTGAATTGAGGTAGGTTATCATTG
AGTTCGATCAGTCAGTTATGCTAGCTATGAATGACTTTAAAATCAATCTT
TTGAATTCTAATAGAAAATATCGAACCAAAATGATAGGCTGATAAGTCGt
acagaaaaaatataaaactttgtAACTTTTTCTCTCAGAAAGGGGAGTGC
CTTGTTCAAACTTTCAGTATGAtcataatttcttttgaattcaCGGATAA
AATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTTTTAGTCAAA
TTCTCTTCGGAGAATATTTCATGGtttaagaaatctcaaaatctgCTTGC
TTATAGTGCACTGATCTGACCACGTGCCAAATTCTGCATAGTTTTAAGAC
TTTTATGAATaatgataatatttttcaatttcaggctcaaatttTTGTAG
AGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAG
ATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAG
ACGAACAGTATGGTAAGAccacacgcttttttataagaaccatgcttttc
catttcatcatggatattcttaactttttggggaaaattatcctaaattg
tcttacggtattcttataTTCAAATTCAACTTCAATTTAACATGAAATAC
ATAGctgaagcataaaatggcacttttgtgaAAGCCTTGAGCTTTATAGA
TGGGTAATTGGCGATAAACGGTTAAAAATGcactaaaaatggcattctta
ggttacgTTGCCAAATCCataatggtgatattcttactatattcttaaat
ttttcgcCAATTTCACTATAAATAatcttattcttataaaaagagtgcGT
GTATTTAATGAAATAACCATTAGATTGGAGGGTTTTAATAAAAATGTCAA
TGAATTTTTGAAGTAGAGAGAGAAACTTTTGgtcaatttaaaattttaag
ccACTCTTTCTCGatcaataatttttgaattaGCTATTTTTCTGAACTAA
TtttgttaagaaaaaaatttccttcgcAAAGCAAAATCCTTTAATTGTGT
AGCCTAAAttcttaaatattcttaaatacCTTTTGATAAAGTATTCGCTT
AAAATGTTTATTCACTTCCTCTAAaaactaccttaagtggataaatttat
AATTCGGCGACTGGCCAAAAACGATTTTTGGCAGGGATTTAGCGACAGAT
CAATTTCGtcaaatttggcggggatttaatttggcgaattggaaattttg
tcacactgaaatgggtgaaaattactcaaaaatatactaaaaagtgttga
tttttcacataattctctttttgttaaatttggcgaggatttaatttggc
gaattgctgaatttggaaattttggcgaattctagcaaaattcgccaaat
ccgccaaatttaatccccgccaaaatttatccacttaaggtacttGACAC
GACATGAGGTAATATACCTTAAGAACTTTTCTCGAGGTGGAGAAAACTTT
TACTTATTGGTAATTTGGAATTTTAGACGCTACCAAGGACCGTGTTTATC
AGAATATTTTCGTTTATAGAAATCACACGAAATGGACCGCGATGATGTCG
ATGCTGGAGGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTA
GACCGTGAGATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGA
ACCAATGAAAGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAA
AAGAATGCGAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattca
aaacattttgagaaGATTTATCGCGAGAGGGGTCGTAAGTATTCTTTTCA
AACAAGATTATACAATAGtgtctccataacttgaacatgCGCAGGGAACA
ATAATTTATGCGttcgaaattttgaattatCGAGTAAGGTTAAtaaagca
ttgttaactgaagggacaagaaaacttgtttgagttaagggaTAGTAATT
AAAAAACGACAGTTTTCTTCctgttttattcaaaatactCTAATAAAATA
CCTTAACTTTGTATCGGGGGATAAAGTCGTCTTTGACGACGGTTGAGATG
GCTATCGAAGTATATTATGAGAAGTGTTGTCTTAAATGAAGCTGAtgaat
gaaaaagtgaaaagtccTCTTTGACGACGTCTTAGACAATGAGAGAATAA
TAGACCTTCATAGCAGTTTTGGAGTACTTTCTGTAAATTCTAGCGGTTAG
AGGAAAAGGAGACAATTGAATCGGAAAAGAAGTTTTTTATCTTTATAGAC
AAATCAGAGAATTTACATGATGACCATGATTTCTATTGGGGAACGCGACA
GCAAATGTTGTTTGGCAAAGTGATCGTTGATTGGTTACCTGAACACATCG
AGACAAAAACTCCACCTATGGATCCTATTTTTGGAGTTCTGTTGAACCCT
ACTGGAGGTTTgtatattgggctcttccaaaaaGTTTTCGTACATGAGGA
GTGGATGATAGAGTTTcctaaaatctacaaaatttgccttgtccgagggg
gggggggaactTTAATCattttgagggtaattttgactGTCAAGGGGGTC
AAGaaatgcttgtccggggggtaaatttccaaaataattttatatcctcc
accccccccatatatttaaatattttctggaaaagcccattctcattttt
gtcatattttttttgattccATCTTCCCAAACTCGAACTAAAAAAGTCTC
TTAGCTATGGTATTTTtcatgattctgatagcgctcacgatTGTTCATGT
TCATCAGgtatataagaatatttataagaataattttagaaaaacagcga
GGCTCgaaaaaaaccccaaaaattttaagaacattgttgAGCCAAGAATA
ACTACAATcgtggtcgtaatatttgagaaaaaagggaaatccaccagGAA
GTTTTGAATAATAACtgcaatcgatttgtaagtgctctaaagtaagttgg
aagggtagagttttaactctgagttttaacatgagacttaagactgttca
aaaatggtccattaagactcataatatagcctggaggtctataaacccga
gccaaattgaaacATCCGATTAAATCTGACAGATGGCCCAAAATCGGCTT
TCTcacccgaactccaaatttcgaaaaacgagaaaataagcttaattctc
aatagatttcgaccatgattgtaaatGCTTAGTAAATTATCACATTAGAA
TAGACAATCAATCCTATCTATTAAAAACCAGAACAGGCCAATTGACGCTC
AAACCacgaaaacaataaaaaataaccgagcctgaaaaaaattaccttat
cggccctttttacgccggcccttattgcgtcacgagcccaaaaataccGC
CAATaaaggccggtgtaaaaagtgccgataaggtatactgattcttataa
agaagttTAAAATTTAGTTCTCATTCTTGGTATTTATTAAGGGCTTGTTG
GACCAGGTGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGA
CCTTTTGCATATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaac
aaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTG
GTGATTGGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAAT
GGGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGT
GTCCAAATAAAAAGCGATAACACAATCGAAACTCTTATAGGTAAACAAAG
TTTCTAAAGCTATACCCTATTTCTGTGCAGAATGGTGCATCCGTGAATAT
TATTTCTTGTTCATCCTGTAACATTTAAGTTACTAAGTTATAAGTATTTC
AGCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTAGTATAGtatatttt
tatacattttatCTTTCAAAAATCTTAAGGATTTTTTTCATCATCGGTTG
AGAAATTTAGGTATTTAGAGTACCGTACCAAAGCGACTTTTCCATTtaat
catggatattcttaatttttacaaaatctttCTATACAGGTTAAATGCTT
TTTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGctccgagggggggggg
gactagggcaATGGGTTACGGGGTTGctcgctggtcagggtacctttttt
aacctccacgagtcccaggtaggggtcacaaaaacaccaaaatagaaaaa
ttagtccctcgtagggtgcctattttgaaaatttggggaaaaagtagaaa
atttgagaacattttggaatttcagtcccattcagggtcacttttttcgc
aaatttcgagtcccacgggggtcccacgtagggtccatttttcgaacctc
agcggagcacccccgtcggtcgacaagggtagtatcCCCCCCGGGAGttc
agccaaattttacaatGATGATGCATATTTTGTTTAAATGTTTTGCcaat
ttgtaccccctatgttgaggagaggggtctggttttttgaatgataaaat
ccaGGGTTTTGATCAGTAAAATCGGGTtcaaaatccagggtggtccaaag
aaatgggagaaaaaaatccaaggcgGTCCTGAaaactggaaaaaaaatca
aaggggttctttttttaaaaaagatcaCCTCAACATAAGggttacaaatt
ttttctgaaatgaatattcttataTTCTCATTATCATACTACTCGTATTG
CATCAAATGTATTATGAAAGAAAACTTCCCTAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061878TCONS_00061878Clytia hemisphaericatranscript
TCONS_00061879TCONS_00061879Clytia hemisphaericatranscript
TCONS_00061880TCONS_00061880Clytia hemisphaericatranscript
TCONS_00061881TCONS_00061881Clytia hemisphaericatranscript
TCONS_00061882TCONS_00061882Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061881-proteinTCONS_00061881-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:457242..466225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.1	0.14	0.11	0.19	0.25	0.1	0.37	0.16	0.27	0.14	0.27	0.35	1.27	0.72	0.26	0.12	15.73	23.83	3.04	2.62	72.33	71.37	54.17	67.8	135.1	91.37	92.77	90.96	0.64	0.94