|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061881 ID=TCONS_00061881|Name=TCONS_00061881|organism=Clytia hemisphaerica|type=transcript|length=1890bp GTACATGATTTAAATAACACGTTGGGGTAAAATCAGTGAATTGAGgctca aatttTTGTAGAGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGA ATCTACCGAAGATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGAT TTTATGGACAGACGAACAGTATGAAATCACACGAAATGGACCGCGATGAT GTCGATGCTGGAGGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGA GCTAGACCGTGAGATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGA CGGAACCAATGAAAGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGT ACAAAAGAATGCGAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAaga ttcaaaacattttgagaaGATTTATCGCGAGAGGGGTCACAAATCAGAGA ATTTACATGATGACCATGATTTCTATTGGGGAACGCGACAGCAAATGTTG TTTGGCAAAGTGATCGTTGATTGGTTACCTGAACACATCGAGACAAAAAC TCCACCTATGGATCCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGC TTGTTGGACCAGGTGATTTAAAATGGATGCACGATTCTTTATTCGACGAT TTGGGACCTTTTGCATATCATTCAGCTGTTCATGATGCTTTCGGatattt gaaaacaaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGA TTTTTGGTGATTGGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTAT TGGAATGGGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCA GTTTGTGTCCAAATAAAAAGCGATAACACAATCGAAACTCTTATAGGTAA ACAAAGTTTCTAAAGCTATACCCTATTTCTGTGCAGAATGGTGCATCCGT GAATATTATTTCTTGTTCATCCTGTAACATTTAAGTTACTAAGTTATAAG TATTTCAGCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTAGTATAGta tatttttatacattttatCTTTCAAAAATCTTAAGGATTTTTTTCATCAT CGGTTGAGAAATTTAGGTATTTAGAGTACCGTACCAAAGCGACTTTTCCA TTtaatcatggatattcttaatttttacaaaatctttCTATACAGGTTAA ATGCTTTTTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGctccgagggg gggggggactagggcaATGGGTTACGGGGTTGctcgctggtcagggtacc ttttttaacctccacgagtcccaggtaggggtcacaaaaacaccaaaata gaaaaattagtccctcgtagggtgcctattttgaaaatttggggaaaaag tagaaaatttgagaacattttggaatttcagtcccattcagggtcacttt tttcgcaaatttcgagtcccacgggggtcccacgtagggtccatttttcg aacctcagcggagcacccccgtcggtcgacaagggtagtatcCCCCCCGG GAGttcagccaaattttacaatGATGATGCATATTTTGTTTAAATGTTTT GCcaatttgtaccccctatgttgaggagaggggtctggttttttgaatga taaaatccaGGGTTTTGATCAGTAAAATCGGGTtcaaaatccagggtggt ccaaagaaatgggagaaaaaaatccaaggcgGTCCTGAaaactggaaaaa aaatcaaaggggttctttttttaaaaaagatcaCCTCAACATAAGggtta caaattttttctgaaatgaatattcttataTTCTCATTATCATACTACTC GTATTGCATCAAATGTATTATGAAAGAAAACTTCCCTAAC Run BLAST on NCBI protein sequence of TCONS_00061881-protein >TCONS_00061881-protein ID=TCONS_00061881-protein|Name=TCONS_00061881-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MGGWLSFQKDHESTEDVKKYCQSIIFVRFYGQTNSMKSHEMDRDDVDAGG REKSSLGIILNELDREIKMAPTVAEFEMTEPMKALLKKLAVIRVCTKECE NEEDCLKRLLEDSKHFEKIYRERGHKSENLHDDHDFYWGTRQQMLFGKVI VDWLPEHIETKTPPMDPIFGVLLNPTGGLVGPGDLKWMHDSLFDDLGPFA YHSAVHDAFGYLKTNHNSGPGYCYLNKGIFGDWSPFGGQLFGLRYWNGLL GEAKPEEAKADQFVSK Run BLAST on NCBI transcript from alignment at scaffold_361:461383..466225+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061881 ID=TCONS_00061881|Name=TCONS_00061881|organism=Clytia hemisphaerica|type=transcript|length=4843bp|location=Sequence derived from alignment at scaffold_361:461383..466225+ (Clytia hemisphaerica) GTACATGATTTAAATAACACGTTGGGGTAAAATCAGTGAATTGAGGTAGG
TTATCATTGAGTTCGATCAGTCAGTTATGCTAGCTATGAATGACTTTAAA
ATCAATCTTTTGAATTCTAATAGAAAATATCGAACCAAAATGATAGGCTG
ATAAGTCGtacagaaaaaatataaaactttgtAACTTTTTCTCTCAGAAA
GGGGAGTGCCTTGTTCAAACTTTCAGTATGAtcataatttcttttgaatt
caCGGATAAAATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAAAGGTT
TTAGTCAAATTCTCTTCGGAGAATATTTCATGGtttaagaaatctcaaaa
tctgCTTGCTTATAGTGCACTGATCTGACCACGTGCCAAATTCTGCATAG
TTTTAAGACTTTTATGAATaatgataatatttttcaatttcaggctcaaa
tttTTGTAGAGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAAT
CTACCGAAGATGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTT
TATGGACAGACGAACAGTATGGTAAGAccacacgcttttttataagaacc
atgcttttccatttcatcatggatattcttaactttttggggaaaattat
cctaaattgtcttacggtattcttataTTCAAATTCAACTTCAATTTAAC
ATGAAATACATAGctgaagcataaaatggcacttttgtgaAAGCCTTGAG
CTTTATAGATGGGTAATTGGCGATAAACGGTTAAAAATGcactaaaaatg
gcattcttaggttacgTTGCCAAATCCataatggtgatattcttactata
ttcttaaatttttcgcCAATTTCACTATAAATAatcttattcttataaaa
agagtgcGTGTATTTAATGAAATAACCATTAGATTGGAGGGTTTTAATAA
AAATGTCAATGAATTTTTGAAGTAGAGAGAGAAACTTTTGgtcaatttaa
aattttaagccACTCTTTCTCGatcaataatttttgaattaGCTATTTTT
CTGAACTAATtttgttaagaaaaaaatttccttcgcAAAGCAAAATCCTT
TAATTGTGTAGCCTAAAttcttaaatattcttaaatacCTTTTGATAAAG
TATTCGCTTAAAATGTTTATTCACTTCCTCTAAaaactaccttaagtgga
taaatttatAATTCGGCGACTGGCCAAAAACGATTTTTGGCAGGGATTTA
GCGACAGATCAATTTCGtcaaatttggcggggatttaatttggcgaattg
gaaattttgtcacactgaaatgggtgaaaattactcaaaaatatactaaa
aagtgttgatttttcacataattctctttttgttaaatttggcgaggatt
taatttggcgaattgctgaatttggaaattttggcgaattctagcaaaat
tcgccaaatccgccaaatttaatccccgccaaaatttatccacttaaggt
acttGACACGACATGAGGTAATATACCTTAAGAACTTTTCTCGAGGTGGA
GAAAACTTTTACTTATTGGTAATTTGGAATTTTAGACGCTACCAAGGACC
GTGTTTATCAGAATATTTTCGTTTATAGAAATCACACGAAATGGACCGCG
ATGATGTCGATGCTGGAGGAAGGGAGAAATCTAGCCTTGGTATTATTCTG
AATGAGCTAGACCGTGAGATCAAAATGGCTCCAACAGTTGCCGAATTCGA
AATGACGGAACCAATGAAAGCATTATTGAAGAAGTTGGCAGTCATTAGAG
TTTGTACAAAAGAATGCGAGAATGAAGAAGATTGCCTTAAAAGGCTTTTG
GAagattcaaaacattttgagaaGATTTATCGCGAGAGGGGTCGTAAGTA
TTCTTTTCAAACAAGATTATACAATAGtgtctccataacttgaacatgCG
CAGGGAACAATAATTTATGCGttcgaaattttgaattatCGAGTAAGGTT
AAtaaagcattgttaactgaagggacaagaaaacttgtttgagttaaggg
aTAGTAATTAAAAAACGACAGTTTTCTTCctgttttattcaaaatactCT
AATAAAATACCTTAACTTTGTATCGGGGGATAAAGTCGTCTTTGACGACG
GTTGAGATGGCTATCGAAGTATATTATGAGAAGTGTTGTCTTAAATGAAG
CTGAtgaatgaaaaagtgaaaagtccTCTTTGACGACGTCTTAGACAATG
AGAGAATAATAGACCTTCATAGCAGTTTTGGAGTACTTTCTGTAAATTCT
AGCGGTTAGAGGAAAAGGAGACAATTGAATCGGAAAAGAAGTTTTTTATC
TTTATAGACAAATCAGAGAATTTACATGATGACCATGATTTCTATTGGGG
AACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTTGATTGGTTACCTG
AACACATCGAGACAAAAACTCCACCTATGGATCCTATTTTTGGAGTTCTG
TTGAACCCTACTGGAGGTTTgtatattgggctcttccaaaaaGTTTTCGT
ACATGAGGAGTGGATGATAGAGTTTcctaaaatctacaaaatttgccttg
tccgagggggggggggaactTTAATCattttgagggtaattttgactGTC
AAGGGGGTCAAGaaatgcttgtccggggggtaaatttccaaaataatttt
atatcctccaccccccccatatatttaaatattttctggaaaagcccatt
ctcatttttgtcatattttttttgattccATCTTCCCAAACTCGAACTAA
AAAAGTCTCTTAGCTATGGTATTTTtcatgattctgatagcgctcacgat
TGTTCATGTTCATCAGgtatataagaatatttataagaataattttagaa
aaacagcgaGGCTCgaaaaaaaccccaaaaattttaagaacattgttgAG
CCAAGAATAACTACAATcgtggtcgtaatatttgagaaaaaagggaaatc
caccagGAAGTTTTGAATAATAACtgcaatcgatttgtaagtgctctaaa
gtaagttggaagggtagagttttaactctgagttttaacatgagacttaa
gactgttcaaaaatggtccattaagactcataatatagcctggaggtcta
taaacccgagccaaattgaaacATCCGATTAAATCTGACAGATGGCCCAA
AATCGGCTTTCTcacccgaactccaaatttcgaaaaacgagaaaataagc
ttaattctcaatagatttcgaccatgattgtaaatGCTTAGTAAATTATC
ACATTAGAATAGACAATCAATCCTATCTATTAAAAACCAGAACAGGCCAA
TTGACGCTCAAACCacgaaaacaataaaaaataaccgagcctgaaaaaaa
ttaccttatcggccctttttacgccggcccttattgcgtcacgagcccaa
aaataccGCCAATaaaggccggtgtaaaaagtgccgataaggtatactga
ttcttataaagaagttTAAAATTTAGTTCTCATTCTTGGTATTTATTAAG
GGCTTGTTGGACCAGGTGATTTAAAATGGATGCACGATTCTTTATTCGAC
GATTTGGGACCTTTTGCATATCATTCAGCTGTTCATGATGCTTTCGGata
tttgaaaacaaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAG
GGATTTTTGGTGATTGGAGTCCATTTGGTGGACAATTATTTGGCTTGAGG
TATTGGAATGGGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGA
TCAGTTTGTGTCCAAATAAAAAGCGATAACACAATCGAAACTCTTATAGG
TAAACAAAGTTTCTAAAGCTATACCCTATTTCTGTGCAGAATGGTGCATC
CGTGAATATTATTTCTTGTTCATCCTGTAACATTTAAGTTACTAAGTTAT
AAGTATTTCAGCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTAGTATA
GtatatttttatacattttatCTTTCAAAAATCTTAAGGATTTTTTTCAT
CATCGGTTGAGAAATTTAGGTATTTAGAGTACCGTACCAAAGCGACTTTT
CCATTtaatcatggatattcttaatttttacaaaatctttCTATACAGGT
TAAATGCTTTTTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGctccgag
ggggggggggactagggcaATGGGTTACGGGGTTGctcgctggtcagggt
accttttttaacctccacgagtcccaggtaggggtcacaaaaacaccaaa
atagaaaaattagtccctcgtagggtgcctattttgaaaatttggggaaa
aagtagaaaatttgagaacattttggaatttcagtcccattcagggtcac
ttttttcgcaaatttcgagtcccacgggggtcccacgtagggtccatttt
tcgaacctcagcggagcacccccgtcggtcgacaagggtagtatcCCCCC
CGGGAGttcagccaaattttacaatGATGATGCATATTTTGTTTAAATGT
TTTGCcaatttgtaccccctatgttgaggagaggggtctggttttttgaa
tgataaaatccaGGGTTTTGATCAGTAAAATCGGGTtcaaaatccagggt
ggtccaaagaaatgggagaaaaaaatccaaggcgGTCCTGAaaactggaa
aaaaaatcaaaggggttctttttttaaaaaagatcaCCTCAACATAAGgg
ttacaaattttttctgaaatgaatattcttataTTCTCATTATCATACTA
CTCGTATTGCATCAAATGTATTATGAAAGAAAACTTCCCTAAC Coding sequence (CDS) from alignment at scaffold_361:461383..466225+ >TCONS_00061881 ID=TCONS_00061881|Name=TCONS_00061881|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_361:461383..466225+ (Clytia hemisphaerica) ATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATGT CAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACGA ACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGGA AGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGAT CAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAAG CATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAAAGAATGCGAG AATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaaaacattttga gaaGATTTATCGCGAGAGGGGTCACAAATCAGAGAATTTACATGATGACC ATGATTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC GTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCC TATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGACCAGGTG ATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGCA TATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccatAA TTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTGGTGATTGGA GTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTTG GGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTCCAAATA AATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGATG TCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGACG AACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAGG AAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAGA TCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAAA GCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAAAGAATGCGA GAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaaaacattttg agaaGATTTATCGCGAGAGGGGTCACAAATCAGAGAATTTACATGATGAC CATGATTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGAT CGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGATC CTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGACCAGGT GATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTGC ATATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccatA ATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTGGTGATTGG AGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTTT GGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTCCAAAT AAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGAT GTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGAC GAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGAG GAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGAG ATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGAA AGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAAAGAATGCG AGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaaaacatttt gagaaGATTTATCGCGAGAGGGGTCACAAATCAGAGAATTTACATGATGA CCATGATTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGA TCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGAT CCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGACCAGG TGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTTG CATATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaaccat AATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTGGTGATTG GAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTTT TGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTCCAAA TAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCATGAATCTACCGAAGA TGTCAAAAAATATTGCCAATCTATCATTTTTGTACGATTTTATGGACAGA CGAACAGTATGAAATCACACGAAATGGACCGCGATGATGTCGATGCTGGA GGAAGGGAGAAATCTAGCCTTGGTATTATTCTGAATGAGCTAGACCGTGA GATCAAAATGGCTCCAACAGTTGCCGAATTCGAAATGACGGAACCAATGA AAGCATTATTGAAGAAGTTGGCAGTCATTAGAGTTTGTACAAAAGAATGC GAGAATGAAGAAGATTGCCTTAAAAGGCTTTTGGAagattcaaaacattt tgagaaGATTTATCGCGAGAGGGGTCACAAATCAGAGAATTTACATGATG ACCATGATTTCTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTG ATCGTTGATTGGTTACCTGAACACATCGAGACAAAAACTCCACCTATGGA TCCTATTTTTGGAGTTCTGTTGAACCCTACTGGAGGGCTTGTTGGACCAG GTGATTTAAAATGGATGCACGATTCTTTATTCGACGATTTGGGACCTTTT GCATATCATTCAGCTGTTCATGATGCTTTCGGatatttgaaaacaaacca tAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGGATTTTTGGTGATT GGAGTCCATTTGGTGGACAATTATTTGGCTTGAGGTATTGGAATGGGCTT TTGGGTGAAGCCAAACCAGAAGAAGCAAAGGCAGATCAGTTTGTGTCCAA ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00061881-exon-scaffold_361-1491911889:461383..461427 | TCONS_00061881-exon-scaffold_361-1491911889:461383..461427 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1510915933:461383..461427 | TCONS_00061881-exon-scaffold_361-1510915933:461383..461427 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1575043694:461383..461427 | TCONS_00061881-exon-scaffold_361-1575043694:461383..461427 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1491911889:461826..461953 | TCONS_00061881-exon-scaffold_361-1491911889:461826..461953 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1510915933:461826..461953 | TCONS_00061881-exon-scaffold_361-1510915933:461826..461953 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1575043694:461826..461953 | TCONS_00061881-exon-scaffold_361-1575043694:461826..461953 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1491911889:463011..463275 | TCONS_00061881-exon-scaffold_361-1491911889:463011..463275 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1510915933:463011..463275 | TCONS_00061881-exon-scaffold_361-1510915933:463011..463275 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1575043694:463011..463275 | TCONS_00061881-exon-scaffold_361-1575043694:463011..463275 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1491911889:463740..463898 | TCONS_00061881-exon-scaffold_361-1491911889:463740..463898 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1510915933:463740..463898 | TCONS_00061881-exon-scaffold_361-1510915933:463740..463898 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1575043694:463740..463898 | TCONS_00061881-exon-scaffold_361-1575043694:463740..463898 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1491911889:464933..466225 | TCONS_00061881-exon-scaffold_361-1491911889:464933..466225 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1510915933:464933..466225 | TCONS_00061881-exon-scaffold_361-1510915933:464933..466225 | Clytia hemisphaerica | exon |
TCONS_00061881-exon-scaffold_361-1575043694:464933..466225 | TCONS_00061881-exon-scaffold_361-1575043694:464933..466225 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_361 | supercontig | scaffold_361:461383..466225 + |
Blast
The following BLAST results are available for this feature:
|