TCONS_00061880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061880
Unique NameTCONS_00061880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061880 ID=TCONS_00061880|Name=TCONS_00061880|organism=Clytia hemisphaerica|type=transcript|length=1453bp
GTACCGTCGgaagttttggaacaaaaacatTCTTATTATTGGGGAACGCG
ACAGCAATTATTATTTGGTAAAGTCGTCGCTGATTGGCTCCCTGAGCATA
TCAAGTCCAAAACTTCACCTATGGACCCGATCTTTGGTACCCTGTTGAAC
CCTACAGGGGGGCTTGTTGGACCAGGTGATTTAAAATGGATGCACGATTC
TTTATTCGACGATTTGGGACCTTTTGCATATCATTCAGCTGTTCATGATG
CTTTCGGatatttgaaaacaaaccatAATTCTGGTCCTGGATATTGTTAT
TTGAACAAAGGGATTTTTGGTGATTGGAGTCCATTTGGTGGACAATTATT
TGGCTTGAGGTATTGGAATGGGCTTTTGGGTGAAGCCAAACCAGAAGAAG
CAAAGGCAGATCAGTTTGTGTCCAAATAAAAAGCGATAACACAATCGAAA
CTCTTATAGGTAAACAAAGTTTCTAAAGCTATACCCTATTTCTGTGCAGA
ATGGTGCATCCGTGAATATTATTTCTTGTTCATCCTGTAACATTTAAGTT
ACTAAGTTATAAGTATTTCAGCTTTTATTTCTTTCTAAGAATTTTAGAAT
TTGTAGTATAGtatatttttatacattttatCTTTCAAAAATCTTAAGGA
TTTTTTTCATCATCGGTTGAGAAATTTAGGTATTTAGAGTACCGTACCAA
AGCGACTTTTCCATTtaatcatggatattcttaatttttacaaaatcttt
CTATACAGGTTAAATGCTTTTTCACTCTTTGTTAGGTTCAGGTTTTAGTT
CAGctccgagggggggggggactagggcaATGGGTTACGGGGTTGctcgc
tggtcagggtaccttttttaacctccacgagtcccaggtaggggtcacaa
aaacaccaaaatagaaaaattagtccctcgtagggtgcctattttgaaaa
tttggggaaaaagtagaaaatttgagaacattttggaatttcagtcccat
tcagggtcacttttttcgcaaatttcgagtcccacgggggtcccacgtag
ggtccatttttcgaacctcagcggagcacccccgtcggtcgacaagggta
gtatcCCCCCCGGGAGttcagccaaattttacaatGATGATGCATATTTT
GTTTAAATGTTTTGCcaatttgtaccccctatgttgaggagaggggtctg
gttttttgaatgataaaatccaGGGTTTTGATCAGTAAAATCGGGTtcaa
aatccagggtggtccaaagaaatgggagaaaaaaatccaaggcgGTCCTG
AaaactggaaaaaaaatcaaaggggttctttttttaaaaaagatcaCCTC
AACATAAGggttacaaattttttctgaaatgaatattcttataTTCTCAT
TATCATACTACTCGTATTGCATCAAATGTATTATGAAAGAAAACTTCCCT
AAC
Run BLAST on NCBI

transcript from alignment at scaffold_361:458078..466225+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061880 ID=TCONS_00061880|Name=TCONS_00061880|organism=Clytia hemisphaerica|type=transcript|length=8148bp|location=Sequence derived from alignment at scaffold_361:458078..466225+ (Clytia hemisphaerica)
GTACCGTCGgaagttttggaacaaaaacatTCTTATTATTGGGGAACGCG
ACAGCAATTATTATTTGGTAAAGTCGTCGCTGATTGGCTCCCTGAGCATA
TCAAGTCCAAAACTTCACCTATGGACCCGATCTTTGGTACCCTGTTGAAC
CCTACAGGGGGTAAGTGAATGATGATGAATAACAGCTTACCTTGTTAAGT
GCTTGGGCAGCCACGTTGCAAATGGGTCATCAGAGTTGAGAATGTGTTCC
GCTTCGGGGCCTTCCTCTAAAATCTAAGAAGCACTTATCAGCTCACAATA
TTAAATATAACTGTTGGAGATTGGACTGAGAaagtttttagttttaattt
tatTCCGTTAAAGGACCTTTATCCCAAGAATTCATTAATGAAAggtttaa
atttcattttttctaatgAACTGATCATTTTTGTTAGAATCTGGTAAATT
TCGGTTGAGTTTCTGTGATTATTATTTGTCCtgatattgggctcttccag
aaaatgttcgtacatgggggtcGAGGATATATCGTCCGGGGGATAGTaaa
aaatctaacaaaatttgccttgtccgggggtaaatttctctgtttggggg
taatttgctctgtttgagtGTAATTTTTAATGTCCAGGtagtcaactgat
gcttgtccataAGTGGGGGGTTAGGCCTGGAGGTTAGACCTgctgcccgg
gggggggggcactgaagggaaatgacctaccagacgttcggcccttaagg
ggaggtttttcatagttcagctagtgcactgtaagggtaggaaattgtga
taaaaggccaattttttggtaaaattggcacaaaattggtcaattttgga
ggaaaaatttcacattttcatggaaaattgcaaaaaaattcgCCCTTACG
ggtgagaaattttcaaaaagtgcactgtaagggtatgatttttcatgtaa
attcactgcactgtaagggtccgattttagaagccaaattttgggccgaa
cgtatggtcgctttcagatcgagtgcccccccccccacggCCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTGGGA
CCTTTTGCATATCATTCAGCTGTTCATGATGGTTTCGGatatttgaaaac
aaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTG
GCGATTGGAGTCCATTCGGTGGACAATTATTTGGTATTCGATTCTGGAGA
GAAACTTGTGACAGGCTTAAGCCAAAGGAAGCAACCGAGGAAATGTTTAT
TTTAAAATAGTTTTATGATAtctaataatttatttttttcaaataatttc
gtGATACACATATATACAAATTTCTGGATATAAATTTGACTGATTTGGTT
ATTTAGTAGAGAATTGTTTTATAGGGGTTTAATCGgtgtaaaaaaatgta
aaatctaGAAATAAAAGACTAGAGTTAATAAATTGACCAAAGTTAGGTAA
TTGACAGGAACTTCGAATAATTTTACTTCCTTGTCAGTCGGTACCACTAC
Atgtatttcccgaacgggaagtatttcccgaacgggaaggtgaaaataaa
tcgaaaaggaaactgtttccagattgaaaatttcatcactttctgtttcc
cgttttgtcaagaacttttcatcgtCCCCGACGGGAAatagaatttttgt
aaacaaagcagatttaGTAAAGCGGGTAGCAAACATTACGCCATAAGTGC
GAGACTTAAAAGACTAAATTTTGACGCTGCAGAAATGAAGTTTTTCCAAC
GGATAAGATTCGATGGGAGTCGGTATTTTAGACAATGATTTTTATATCAA
TTAATATATCAATTGATATAAAAACAGAAACCATtttatataaaaagtaa
aaacccAAATAAGTAAAAAACCAAATAAGCAATAACAAAGCGTTTGAATG
AAAAGAGATTATAAAATTTAATACTGTTATAGCAAGAAAAGGTAAACCTA
GTTTCGTACATGATTTAAATAACACGTTGGGGTAAAATCAGTGAATTGAG
GTAGGTTATCATTGAGTTCGATCAGTCAGTTATGCTAGCTATGAATGACT
TTAAAATCAATCTTTTGAATTCTAATAGAAAATATCGAACCAAAATGATA
GGCTGATAAGTCGtacagaaaaaatataaaactttgtAACTTTTTCTCTC
AGAAAGGGGAGTGCCTTGTTCAAACTTTCAGTATGAtcataatttctttt
gaattcaCGGATAAAATTATCGAAAAAGTCTTTAAAGTTTTGCAACAGAA
AGGTTTTAGTCAAATTCTCTTCGGAGAATATTTCATGGtttaagaaatct
caaaatctgCTTGCTTATAGTGCACTGATCTGACCACGTGCCAAATTCTG
CATAGTTTTAAGACTTTTATGAATaatgataatatttttcaatttcaggc
tcaaatttTTGTAGAGAAATGGGTGGCTGGCTTAGTTTCCAAAAAGACCA
TGAATCTACCGAAGATGTCAAAAAATATTGCCAATCTATCATTTTTGTAC
GATTTTATGGACAGACGAACAGTATGGTAAGAccacacgcttttttataa
gaaccatgcttttccatttcatcatggatattcttaactttttggggaaa
attatcctaaattgtcttacggtattcttataTTCAAATTCAACTTCAAT
TTAACATGAAATACATAGctgaagcataaaatggcacttttgtgaAAGCC
TTGAGCTTTATAGATGGGTAATTGGCGATAAACGGTTAAAAATGcactaa
aaatggcattcttaggttacgTTGCCAAATCCataatggtgatattctta
ctatattcttaaatttttcgcCAATTTCACTATAAATAatcttattctta
taaaaagagtgcGTGTATTTAATGAAATAACCATTAGATTGGAGGGTTTT
AATAAAAATGTCAATGAATTTTTGAAGTAGAGAGAGAAACTTTTGgtcaa
tttaaaattttaagccACTCTTTCTCGatcaataatttttgaattaGCTA
TTTTTCTGAACTAATtttgttaagaaaaaaatttccttcgcAAAGCAAAA
TCCTTTAATTGTGTAGCCTAAAttcttaaatattcttaaatacCTTTTGA
TAAAGTATTCGCTTAAAATGTTTATTCACTTCCTCTAAaaactaccttaa
gtggataaatttatAATTCGGCGACTGGCCAAAAACGATTTTTGGCAGGG
ATTTAGCGACAGATCAATTTCGtcaaatttggcggggatttaatttggcg
aattggaaattttgtcacactgaaatgggtgaaaattactcaaaaatata
ctaaaaagtgttgatttttcacataattctctttttgttaaatttggcga
ggatttaatttggcgaattgctgaatttggaaattttggcgaattctagc
aaaattcgccaaatccgccaaatttaatccccgccaaaatttatccactt
aaggtacttGACACGACATGAGGTAATATACCTTAAGAACTTTTCTCGAG
GTGGAGAAAACTTTTACTTATTGGTAATTTGGAATTTTAGACGCTACCAA
GGACCGTGTTTATCAGAATATTTTCGTTTATAGAAATCACACGAAATGGA
CCGCGATGATGTCGATGCTGGAGGAAGGGAGAAATCTAGCCTTGGTATTA
TTCTGAATGAGCTAGACCGTGAGATCAAAATGGCTCCAACAGTTGCCGAA
TTCGAAATGACGGAACCAATGAAAGCATTATTGAAGAAGTTGGCAGTCAT
TAGAGTTTGTACAAAAGAATGCGAGAATGAAGAAGATTGCCTTAAAAGGC
TTTTGGAagattcaaaacattttgagaaGATTTATCGCGAGAGGGGTCGT
AAGTATTCTTTTCAAACAAGATTATACAATAGtgtctccataacttgaac
atgCGCAGGGAACAATAATTTATGCGttcgaaattttgaattatCGAGTA
AGGTTAAtaaagcattgttaactgaagggacaagaaaacttgtttgagtt
aagggaTAGTAATTAAAAAACGACAGTTTTCTTCctgttttattcaaaat
actCTAATAAAATACCTTAACTTTGTATCGGGGGATAAAGTCGTCTTTGA
CGACGGTTGAGATGGCTATCGAAGTATATTATGAGAAGTGTTGTCTTAAA
TGAAGCTGAtgaatgaaaaagtgaaaagtccTCTTTGACGACGTCTTAGA
CAATGAGAGAATAATAGACCTTCATAGCAGTTTTGGAGTACTTTCTGTAA
ATTCTAGCGGTTAGAGGAAAAGGAGACAATTGAATCGGAAAAGAAGTTTT
TTATCTTTATAGACAAATCAGAGAATTTACATGATGACCATGATTTCTAT
TGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTTGATTGGTT
ACCTGAACACATCGAGACAAAAACTCCACCTATGGATCCTATTTTTGGAG
TTCTGTTGAACCCTACTGGAGGTTTgtatattgggctcttccaaaaaGTT
TTCGTACATGAGGAGTGGATGATAGAGTTTcctaaaatctacaaaatttg
ccttgtccgagggggggggggaactTTAATCattttgagggtaattttga
ctGTCAAGGGGGTCAAGaaatgcttgtccggggggtaaatttccaaaata
attttatatcctccaccccccccatatatttaaatattttctggaaaagc
ccattctcatttttgtcatattttttttgattccATCTTCCCAAACTCGA
ACTAAAAAAGTCTCTTAGCTATGGTATTTTtcatgattctgatagcgctc
acgatTGTTCATGTTCATCAGgtatataagaatatttataagaataattt
tagaaaaacagcgaGGCTCgaaaaaaaccccaaaaattttaagaacattg
ttgAGCCAAGAATAACTACAATcgtggtcgtaatatttgagaaaaaaggg
aaatccaccagGAAGTTTTGAATAATAACtgcaatcgatttgtaagtgct
ctaaagtaagttggaagggtagagttttaactctgagttttaacatgaga
cttaagactgttcaaaaatggtccattaagactcataatatagcctggag
gtctataaacccgagccaaattgaaacATCCGATTAAATCTGACAGATGG
CCCAAAATCGGCTTTCTcacccgaactccaaatttcgaaaaacgagaaaa
taagcttaattctcaatagatttcgaccatgattgtaaatGCTTAGTAAA
TTATCACATTAGAATAGACAATCAATCCTATCTATTAAAAACCAGAACAG
GCCAATTGACGCTCAAACCacgaaaacaataaaaaataaccgagcctgaa
aaaaattaccttatcggccctttttacgccggcccttattgcgtcacgag
cccaaaaataccGCCAATaaaggccggtgtaaaaagtgccgataaggtat
actgattcttataaagaagttTAAAATTTAGTTCTCATTCTTGGTATTTA
TTAAGGGCTTGTTGGACCAGGTGATTTAAAATGGATGCACGATTCTTTAT
TCGACGATTTGGGACCTTTTGCATATCATTCAGCTGTTCATGATGCTTTC
GGatatttgaaaacaaaccatAATTCTGGTCCTGGATATTGTTATTTGAA
CAAAGGGATTTTTGGTGATTGGAGTCCATTTGGTGGACAATTATTTGGCT
TGAGGTATTGGAATGGGCTTTTGGGTGAAGCCAAACCAGAAGAAGCAAAG
GCAGATCAGTTTGTGTCCAAATAAAAAGCGATAACACAATCGAAACTCTT
ATAGGTAAACAAAGTTTCTAAAGCTATACCCTATTTCTGTGCAGAATGGT
GCATCCGTGAATATTATTTCTTGTTCATCCTGTAACATTTAAGTTACTAA
GTTATAAGTATTTCAGCTTTTATTTCTTTCTAAGAATTTTAGAATTTGTA
GTATAGtatatttttatacattttatCTTTCAAAAATCTTAAGGATTTTT
TTCATCATCGGTTGAGAAATTTAGGTATTTAGAGTACCGTACCAAAGCGA
CTTTTCCATTtaatcatggatattcttaatttttacaaaatctttCTATA
CAGGTTAAATGCTTTTTCACTCTTTGTTAGGTTCAGGTTTTAGTTCAGct
ccgagggggggggggactagggcaATGGGTTACGGGGTTGctcgctggtc
agggtaccttttttaacctccacgagtcccaggtaggggtcacaaaaaca
ccaaaatagaaaaattagtccctcgtagggtgcctattttgaaaatttgg
ggaaaaagtagaaaatttgagaacattttggaatttcagtcccattcagg
gtcacttttttcgcaaatttcgagtcccacgggggtcccacgtagggtcc
atttttcgaacctcagcggagcacccccgtcggtcgacaagggtagtatc
CCCCCCGGGAGttcagccaaattttacaatGATGATGCATATTTTGTTTA
AATGTTTTGCcaatttgtaccccctatgttgaggagaggggtctggtttt
ttgaatgataaaatccaGGGTTTTGATCAGTAAAATCGGGTtcaaaatcc
agggtggtccaaagaaatgggagaaaaaaatccaaggcgGTCCTGAaaac
tggaaaaaaaatcaaaggggttctttttttaaaaaagatcaCCTCAACAT
AAGggttacaaattttttctgaaatgaatattcttataTTCTCATTATCA
TACTACTCGTATTGCATCAAATGTATTATGAAAGAAAACTTCCCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038811XLOC_038811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061880-exon-scaffold_361-1491911889:458078..458237TCONS_00061880-exon-scaffold_361-1491911889:458078..458237Clytia hemisphaericaexon
TCONS_00061880-exon-scaffold_361-1510915933:458078..458237TCONS_00061880-exon-scaffold_361-1510915933:458078..458237Clytia hemisphaericaexon
TCONS_00061880-exon-scaffold_361-1575043694:458078..458237TCONS_00061880-exon-scaffold_361-1575043694:458078..458237Clytia hemisphaericaexon
TCONS_00061880-exon-scaffold_361-1491911889:464933..466225TCONS_00061880-exon-scaffold_361-1491911889:464933..466225Clytia hemisphaericaexon
TCONS_00061880-exon-scaffold_361-1510915933:464933..466225TCONS_00061880-exon-scaffold_361-1510915933:464933..466225Clytia hemisphaericaexon
TCONS_00061880-exon-scaffold_361-1575043694:464933..466225TCONS_00061880-exon-scaffold_361-1575043694:464933..466225Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:458078..466225 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102056	0.138899	0	0	0.247683	0.0980878	0.260817	0.16072	0.234973	0.141107	0.106717	0.354005	1.20774	0.613056	0.260482	0.122945	0.0490748	0.213857	2.95182	2.58362	0.493098	0.161756	0	0	0.0788705	0	0	0	0.173608	0.184741
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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