XLOC_038259 (gene) - C. hemisphaerica

Overview
NameXLOC_038259
Unique NameXLOC_038259
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_350:143080..148494+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038259 ID=XLOC_038259|Name=XLOC_038259|organism=Clytia hemisphaerica|type=gene|length=5415bp|location=Sequence derived from alignment at scaffold_350:143080..148494+ (Clytia hemisphaerica)
ATCCACAATGAGCACAGAAAAGAAGAAAGGGACGAATATAAATCCTGTTG TGAAATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCG AAAGAGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatggtaa gCAGATTTCTATTCGGTTTTTTTTTTAGGAAACGTGTTGAAATAATAAAG GCACTATAATTTATGTAAGGGTAGATAAGTTTCTTCTTCGGGGATATCGG GTAATAGTTAGAagaattattatttttgatgattttatgACATGTCAATT TTATCACTAAAACTGAGCCAGAATGAAAGGTTCTTTTCACAATGAGGAAT GTGTCATTTTGATGTTCTGAAGATCCAACCCTCCCTGGCCGTAACGAAAT ACAAGTACAAATACAAATAGCCCGAAAAGGTGACTCTTATTAGGGAAAAA CACATTGCAAAGCTTTGTTGTTTATCTGCTTTTTATTTTGTGTCTCAGTA AAATCTTATCTACTCCTACAGTTAGACCACATTGTACCTCTCTTTTCAAC AAGAAAGGTATACTTTCCCCTCTCTGacaaacaaagacattttttgatTC CCCATTAGAACCAGCAAGTGGTTTTCATTGTAAGATGTGAAGTACAGTAT TTATTATTCATTAACAAAAAAATGAGAGGCAGTTCTTAAACAAatattca ttttccttttttcaactttactggtggttttattcaaagtttataTATTA ATCTCAGTCCTATATCATTGTAACAGATATATTCGATAATTAGCAGGGGC TATTTTTTGAAGCTTAGGGGTCGTGAAAACTTGATGAAGTTTACAAATGG TGGCACAACGGTGTACTGTACCAAAAGAATGTCGATAAACTGTGAAAGGA TTGCAAGATTTCCACTAAAACTTGGTGACTTGACCTAAACTAGGGAGGCA AATTTCACGTGGATACCTAGTAATTTAGGACTTTTTAAGCAGTCTTTCAA TTCTTTTCACGGGGTTCATTTTTGAACTAAACGAAACACTGAAGGAACTG GGTTTAAACTTTGGAATCCCCTGGTTTGAGGTGCTTATATCGCTCTTTCT TTAATTGGAGGCGATTGCAGGGAAAAGTTTGTCAAAAGAAACGCGAGGGA AGCGAGTGCGAAACTTTCCGAATAATTTTCCCTCTTTTTTGCAACTACCA TTTATAGGCTTAAAAAACAAGTGCAAAAAATAGGGATATTAGTACCACGC ACGCTATTGAGGTATccataaaactaaaaaaacgaGTCATCCGTAAAAGA AAACAAGCTGTTAGTGTTACATTTAGCTACAAAAACATAAAGCTATGGAG AATTTGGTGAATATTATGGAAACGGCGCTCCTTCACAAACGTGATCGACA AAACATGTTTGGTGTTGACAATACGAAGCTCTTACTCACCATCTTTCAAG GTTCATGGAACTGCCCTCCattatttttgaatatatagcttccatggcGT CACAATGACAATTATGGGCAtgttctttttgacgttacgtcacaaaataa aaataagacttttgaataaaaagctaCCAAAAACCAGATTTACGAGCTAA TAAATttgaattatgtttgaaaacgagaaatattttagcgatgaacggat aataaaccatttatttggacgcagtctcatccaatatgaaaaatattgga ttagactttgtccaataactgcttgATAGTATTATTCTTATGTGAAtctg aaaaaatcttcagaGGGTCGCTATACAATTCCATTATAGTGCTACCactg tactcttaggttccaaataaagggggggttggaaaatttttgaaatttta ataaacggggggggggcctaattgccggggtggttagaaattgtattttt gtaaacccaaaaataaggtaactATAGGctaaatcaggctatttagagca aaataaggggccttctctttgacagctgaaaattattcttaaaaactaat aaacggggggttctAATAAGGTCCgtggggttggaaaattttcgaaaaat taacaagcgtttatttggaacctaagagtaattatCTGCAGTAATTCATG ATGTTATTATAAATTCAATTCTATTCATCTTCTCTGCTTCACTTCAGGCA AGAAGCTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCA ATTTCTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAA CTACGAGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACA TCAAAGAAAAACCAGGTTTGCTCTCTGTACAATCGTAATTTCTTTGGATT CGCTATTTACACCCATTCCGTTTATTCACAATGATCAACGTCACACCCGA GTTTGCCTGAATGTCCCCAAATTTCACAGGAAAAATTGTTCCAACCTTGT TTTTAGTCTCAAGGTCATCACAATTTCAATATCCCCCATTaacttaatta aaaaaaaattaaaaaaaagcttCTTCCTGTATGTTTTCTGTTGTATTATA GGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAATTTCTATCA GAACATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTCCTATGAAAG TACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTATTGAAACTG AAGATTGAAGAAGCCCTGAATATCAATGATCACCATATACCCAAATCCAT CATGCAAATGTTTTGTGTTCTTTTTCAAGTAAGTATTAGGTTTGTTTTTC AAGGTCATTTACTATACTATCgtttatcagaaaaaaattcgTTGACGAGA ATTTTCATCACTTTTTCGAGGTGCGATATTACGTTCAATTGCTCACAAGT CAAAActttataccttatcggccctttttacaccggcgcccttattggcg ttatttttgggctcgtggtgTAATAAGGGCCGACGTTAAAAGGGCTGGCG TAAAAAGGGtcaatattttgcaattttaacctaaaagcggtgttaatttt ttatcattatttctcaatttaaaggattttaggtatgattcgaagacgaa aattatccattgttttactccatatttaaaacttcagtgaaatatttaat atatttaaaaatcagtgattttcgatggagttttcaacagtttactactt aaaaaagacattttaatgtaaattttagtcattatttactaatttgaagc ttaagtagccatttttacaaattttggcgtaaAGTAGTCTAATTTTTCGA TAGGCATCACGAGACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACT AGAACGATTGATGGCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTC TACTTACACCACCACAAAGAAGCCACNTGGCTCGTGTGATCAATCCCTTC TTGGGAAGTAAAGGTCTACTTACACCACCACAAAGAGGCCATCATCATAA TAGCCAACATTCTCATCATAAGAAACAAGACAAGTTGACACCCTCCTCTT CCATAGGATCCGGAGCAAGTACACCGGAAACCGAAGGTAccattcttctt tctttttgtctatCGATAAAGTACCATAAAAAAACCTTCTCAGGTCGAAA CAtctaaaacctcaaaatattctGCTCAGCTTTTGAATCTGTTTGAATCA TACTTCATACTCTTTTACGCATTTTTTtgtaagcaactccaattttcggg tcagccttggggttgcttagcattctagctcattttctgaaaaaaaactg ctttgaccacccctgatattataccatatttatacATTAAatcaagggct atcgtttgccatggttagattatctaaaaagcttatACTTTACGATATAG CGATATTAATTGGCAAATTTGAGCCATCAAGCCCTAGCAACCTagttgct taaaaaaacaatatttttcattatAATTAAACAGACAAgtattaaagaaa aaaatttttttagccTTGCGTCTGAAAATATGACAGTGGTAACAAATTTC TAGTTCCAGCAAAGTATCTAGACGTTCATAGTGAACTCTAGTTCCTGGTA TATATAAGGCTTTCATTTCTGGTAATTATCATGTGTTGAATATTTTTCTT GTCAGTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTTTG AAGAACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGC CCACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATC TTTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATGTCAGGTTT GGGCGTATTTGCTCTTTTTAAGCTTGAGCTCTAAAACTAAACTATTAACT TCGTGATTTTCGACCTCCACAATTAAAATGTTTTGTCTTGTGTTGTtagt ttaaaccatattttgaacAAGTGTTAAATTCAGCTAATTTCTTTGTAATG CAAACTTCTgataattttttgcattttctttggTTAGAATGTACTATATG GGGGGGGGGCTTCTGATAATCCGGTATTGATCGATATTCCTGTGTTGACT TGTTTTTCCGGTATTTGACAGTATTGAAAGGCCGAATTTCCGGTAATGTC GTCGGAGCACTTGTTACCGGTACTGtatttgagaattttttctaCTGTAT TCCGGTGTCATGTTCCCTCGGAAGCCCCCGCTGCATGAATGCATTCTAAT AAGTATCATCTCGAAGTATTGGTTCGTATTCGTAATTTTAATTATattgt tctttaaaaagatgatagaatttttaaatttattagaACTTATTATTTGT GTGTTTGGGAGAAGAGATTAGTTTTTGTGGGTCTAATTCCAGAGTTGAAA TCAGTCACATTTTCTTTGTGCAAGGTTTTGGTCTTGTTTTCGCCGAAGAT ACTATTTTCGCTATTCTATGAAAATTAACTTATGTCACCTAATCTGTGAG GTCATTTTTGTGAAGACTGAATGACTGGAATTATTCAACGAATTGAACCT TGGTAGAGGTTTTCGAGTCATTGTATTTTCCGGGTGTGTTGTAATTATGT TTTAAGTACCTGTACTACTCATACAAAATTATCTTGACGAAAATACACTC TGTTCCGCTATGATTTTCTTATTGATGCATTCTTGTTTGaggaaagaaaa cttttttgttgataatttttgtttactttttttgtgatttttaataTATT TCGTACATCAGATTATTATTTATACttgtgtttctttttataaatatttc atttcatatttttaattttcgaattttgattCATAATATGCAATATAGCT TGTACATAATACTTGAACAAATTAAGCTGTAGTTACTTGAAATTGAACCT TCCCAATGCTTGGAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00060947TCONS_00060947Clytia hemisphaericatranscript
TCONS_00060948TCONS_00060948Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00060947-proteinTCONS_00060947-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:143080..148494 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PRR5Lproline-rich protein 5-like isoform a Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.79 58.37 43.32 38.89 36.41 28.76 34.86 35.06 28.25 29.25 29.64 23.77 15.57 14.12 13.4 16.92 20.36 22.54 18.14 19.77 19.49 20.75 17.61 18.81 16.56 18.84 20.36 16.44 16.86 14.13