TCONS_00060947 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060947
Unique NameTCONS_00060947
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2018

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060947 ID=TCONS_00060947|Name=TCONS_00060947|organism=Clytia hemisphaerica|type=transcript|length=2018bp
ATCCACAATGAGCACAGAAAAGAAGAAAGGGACGAATATAAATCCTGTTG
TGAAATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCG
AAAGAGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatgGCAA
GAAGCTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCAA
TTTCTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAAC
TACGAGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACAT
CAAAGAAAAACCAGGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGA
CCAATTTCTATCAGAACATTTTACCAACACTTCAAGCCTTATTCTGTTCC
ATTCCTATGAAAGTACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGT
TTTATTGAAACTGAAGATTGAAGAAGCCCTGAATATCAATGATCACCATA
TACCCAAATCCATCATGCAAATGTTTTGTGTTCTTTTTCAAGCATCACGA
GACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACTAGAACGATTGAT
GGCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTCTACTTACACCAC
CACAAAGAAGCCATCATCATAATAGCCAACATTCTCATCATAAGAAACAA
GACAAGTTGACACCCTCCTCTTCCATAGGATCCGGAGCAAGTACACCGGA
AACCGAAGTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATT
TTGAAGAACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGC
GGCCCACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGA
ATCTTTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATGTCAGG
TTTGGGCGTATTTGCTCTTTTTAAGCTTGAGCTCTAAAACTAAACTATTA
ACTTCGTGATTTTCGACCTCCACAATTAAAATGTTTTGTCTTGTGTTGTt
agtttaaaccatattttgaacAAGTGTTAAATTCAGCTAATTTCTTTGTA
ATGCAAACTTCTgataattttttgcattttctttggTTAGAATGTACTAT
ATGGGGGGGGGGCTTCTGATAATCCGGTATTGATCGATATTCCTGTGTTG
ACTTGTTTTTCCGGTATTTGACAGTATTGAAAGGCCGAATTTCCGGTAAT
GTCGTCGGAGCACTTGTTACCGGTACTGtatttgagaattttttctaCTG
TATTCCGGTGTCATGTTCCCTCGGAAGCCCCCGCTGCATGAATGCATTCT
AATAAGTATCATCTCGAAGTATTGGTTCGTATTCGTAATTTTAATTATat
tgttctttaaaaagatgatagaatttttaaatttattagaACTTATTATT
TGTGTGTTTGGGAGAAGAGATTAGTTTTTGTGGGTCTAATTCCAGAGTTG
AAATCAGTCACATTTTCTTTGTGCAAGGTTTTGGTCTTGTTTTCGCCGAA
GATACTATTTTCGCTATTCTATGAAAATTAACTTATGTCACCTAATCTGT
GAGGTCATTTTTGTGAAGACTGAATGACTGGAATTATTCAACGAATTGAA
CCTTGGTAGAGGTTTTCGAGTCATTGTATTTTCCGGGTGTGTTGTAATTA
TGTTTTAAGTACCTGTACTACTCATACAAAATTATCTTGACGAAAATACA
CTCTGTTCCGCTATGATTTTCTTATTGATGCATTCTTGTTTGaggaaaga
aaacttttttgttgataatttttgtttactttttttgtgatttttaataT
ATTTCGTACATCAGATTATTATTTATACttgtgtttctttttataaatat
ttcatttcatatttttaattttcgaattttgattCATAATATGCAATATA
GCTTGTACATAATACTTGAACAAATTAAGCTGTAGTTACTTGAAATTGAA
CCTTCCCAATGCTTGGAT
Run BLAST on NCBI

protein sequence of TCONS_00060947-protein

>TCONS_00060947-protein ID=TCONS_00060947-protein|Name=TCONS_00060947-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
STMSTEKKKGTNINPVVKSQKKITGKKDDFSNSKEWKSVVSGCTNIFNGK
KLSNHDFVKMFETIRSISSSADVGLANESVSRNYEDAILSRGMIILREDI
KEKPGHALLHKLGEVWTNFYQNILPTLQALFCSIPMKVREVTLLAFRDNV
LLKLKIEEALNINDHHIPKSIMQMFCVLFQASRDPEERERKNFDELERLM
ARVINPFLGSKGLLTPPQRSHHHNSQHSHHKKQDKLTPSSSIGSGASTPE
TEVKSNQCSAADDNDDFEELLNFRRQNLNRFAGGPQRLSAVDEQKGGISE
SLASLIADGFELG
Run BLAST on NCBI

transcript from alignment at scaffold_350:143080..148494+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060947 ID=TCONS_00060947|Name=TCONS_00060947|organism=Clytia hemisphaerica|type=transcript|length=5415bp|location=Sequence derived from alignment at scaffold_350:143080..148494+ (Clytia hemisphaerica)
ATCCACAATGAGCACAGAAAAGAAGAAAGGGACGAATATAAATCCTGTTG
TGAAATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCG
AAAGAGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatggtaa
gCAGATTTCTATTCGGTTTTTTTTTTAGGAAACGTGTTGAAATAATAAAG
GCACTATAATTTATGTAAGGGTAGATAAGTTTCTTCTTCGGGGATATCGG
GTAATAGTTAGAagaattattatttttgatgattttatgACATGTCAATT
TTATCACTAAAACTGAGCCAGAATGAAAGGTTCTTTTCACAATGAGGAAT
GTGTCATTTTGATGTTCTGAAGATCCAACCCTCCCTGGCCGTAACGAAAT
ACAAGTACAAATACAAATAGCCCGAAAAGGTGACTCTTATTAGGGAAAAA
CACATTGCAAAGCTTTGTTGTTTATCTGCTTTTTATTTTGTGTCTCAGTA
AAATCTTATCTACTCCTACAGTTAGACCACATTGTACCTCTCTTTTCAAC
AAGAAAGGTATACTTTCCCCTCTCTGacaaacaaagacattttttgatTC
CCCATTAGAACCAGCAAGTGGTTTTCATTGTAAGATGTGAAGTACAGTAT
TTATTATTCATTAACAAAAAAATGAGAGGCAGTTCTTAAACAAatattca
ttttccttttttcaactttactggtggttttattcaaagtttataTATTA
ATCTCAGTCCTATATCATTGTAACAGATATATTCGATAATTAGCAGGGGC
TATTTTTTGAAGCTTAGGGGTCGTGAAAACTTGATGAAGTTTACAAATGG
TGGCACAACGGTGTACTGTACCAAAAGAATGTCGATAAACTGTGAAAGGA
TTGCAAGATTTCCACTAAAACTTGGTGACTTGACCTAAACTAGGGAGGCA
AATTTCACGTGGATACCTAGTAATTTAGGACTTTTTAAGCAGTCTTTCAA
TTCTTTTCACGGGGTTCATTTTTGAACTAAACGAAACACTGAAGGAACTG
GGTTTAAACTTTGGAATCCCCTGGTTTGAGGTGCTTATATCGCTCTTTCT
TTAATTGGAGGCGATTGCAGGGAAAAGTTTGTCAAAAGAAACGCGAGGGA
AGCGAGTGCGAAACTTTCCGAATAATTTTCCCTCTTTTTTGCAACTACCA
TTTATAGGCTTAAAAAACAAGTGCAAAAAATAGGGATATTAGTACCACGC
ACGCTATTGAGGTATccataaaactaaaaaaacgaGTCATCCGTAAAAGA
AAACAAGCTGTTAGTGTTACATTTAGCTACAAAAACATAAAGCTATGGAG
AATTTGGTGAATATTATGGAAACGGCGCTCCTTCACAAACGTGATCGACA
AAACATGTTTGGTGTTGACAATACGAAGCTCTTACTCACCATCTTTCAAG
GTTCATGGAACTGCCCTCCattatttttgaatatatagcttccatggcGT
CACAATGACAATTATGGGCAtgttctttttgacgttacgtcacaaaataa
aaataagacttttgaataaaaagctaCCAAAAACCAGATTTACGAGCTAA
TAAATttgaattatgtttgaaaacgagaaatattttagcgatgaacggat
aataaaccatttatttggacgcagtctcatccaatatgaaaaatattgga
ttagactttgtccaataactgcttgATAGTATTATTCTTATGTGAAtctg
aaaaaatcttcagaGGGTCGCTATACAATTCCATTATAGTGCTACCactg
tactcttaggttccaaataaagggggggttggaaaatttttgaaatttta
ataaacggggggggggcctaattgccggggtggttagaaattgtattttt
gtaaacccaaaaataaggtaactATAGGctaaatcaggctatttagagca
aaataaggggccttctctttgacagctgaaaattattcttaaaaactaat
aaacggggggttctAATAAGGTCCgtggggttggaaaattttcgaaaaat
taacaagcgtttatttggaacctaagagtaattatCTGCAGTAATTCATG
ATGTTATTATAAATTCAATTCTATTCATCTTCTCTGCTTCACTTCAGGCA
AGAAGCTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCA
ATTTCTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAA
CTACGAGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACA
TCAAAGAAAAACCAGGTTTGCTCTCTGTACAATCGTAATTTCTTTGGATT
CGCTATTTACACCCATTCCGTTTATTCACAATGATCAACGTCACACCCGA
GTTTGCCTGAATGTCCCCAAATTTCACAGGAAAAATTGTTCCAACCTTGT
TTTTAGTCTCAAGGTCATCACAATTTCAATATCCCCCATTaacttaatta
aaaaaaaattaaaaaaaagcttCTTCCTGTATGTTTTCTGTTGTATTATA
GGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAATTTCTATCA
GAACATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTCCTATGAAAG
TACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTATTGAAACTG
AAGATTGAAGAAGCCCTGAATATCAATGATCACCATATACCCAAATCCAT
CATGCAAATGTTTTGTGTTCTTTTTCAAGTAAGTATTAGGTTTGTTTTTC
AAGGTCATTTACTATACTATCgtttatcagaaaaaaattcgTTGACGAGA
ATTTTCATCACTTTTTCGAGGTGCGATATTACGTTCAATTGCTCACAAGT
CAAAActttataccttatcggccctttttacaccggcgcccttattggcg
ttatttttgggctcgtggtgTAATAAGGGCCGACGTTAAAAGGGCTGGCG
TAAAAAGGGtcaatattttgcaattttaacctaaaagcggtgttaatttt
ttatcattatttctcaatttaaaggattttaggtatgattcgaagacgaa
aattatccattgttttactccatatttaaaacttcagtgaaatatttaat
atatttaaaaatcagtgattttcgatggagttttcaacagtttactactt
aaaaaagacattttaatgtaaattttagtcattatttactaatttgaagc
ttaagtagccatttttacaaattttggcgtaaAGTAGTCTAATTTTTCGA
TAGGCATCACGAGACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACT
AGAACGATTGATGGCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTC
TACTTACACCACCACAAAGAAGCCACNTGGCTCGTGTGATCAATCCCTTC
TTGGGAAGTAAAGGTCTACTTACACCACCACAAAGAGGCCATCATCATAA
TAGCCAACATTCTCATCATAAGAAACAAGACAAGTTGACACCCTCCTCTT
CCATAGGATCCGGAGCAAGTACACCGGAAACCGAAGGTAccattcttctt
tctttttgtctatCGATAAAGTACCATAAAAAAACCTTCTCAGGTCGAAA
CAtctaaaacctcaaaatattctGCTCAGCTTTTGAATCTGTTTGAATCA
TACTTCATACTCTTTTACGCATTTTTTtgtaagcaactccaattttcggg
tcagccttggggttgcttagcattctagctcattttctgaaaaaaaactg
ctttgaccacccctgatattataccatatttatacATTAAatcaagggct
atcgtttgccatggttagattatctaaaaagcttatACTTTACGATATAG
CGATATTAATTGGCAAATTTGAGCCATCAAGCCCTAGCAACCTagttgct
taaaaaaacaatatttttcattatAATTAAACAGACAAgtattaaagaaa
aaaatttttttagccTTGCGTCTGAAAATATGACAGTGGTAACAAATTTC
TAGTTCCAGCAAAGTATCTAGACGTTCATAGTGAACTCTAGTTCCTGGTA
TATATAAGGCTTTCATTTCTGGTAATTATCATGTGTTGAATATTTTTCTT
GTCAGTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTTTG
AAGAACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGC
CCACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATC
TTTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATGTCAGGTTT
GGGCGTATTTGCTCTTTTTAAGCTTGAGCTCTAAAACTAAACTATTAACT
TCGTGATTTTCGACCTCCACAATTAAAATGTTTTGTCTTGTGTTGTtagt
ttaaaccatattttgaacAAGTGTTAAATTCAGCTAATTTCTTTGTAATG
CAAACTTCTgataattttttgcattttctttggTTAGAATGTACTATATG
GGGGGGGGGCTTCTGATAATCCGGTATTGATCGATATTCCTGTGTTGACT
TGTTTTTCCGGTATTTGACAGTATTGAAAGGCCGAATTTCCGGTAATGTC
GTCGGAGCACTTGTTACCGGTACTGtatttgagaattttttctaCTGTAT
TCCGGTGTCATGTTCCCTCGGAAGCCCCCGCTGCATGAATGCATTCTAAT
AAGTATCATCTCGAAGTATTGGTTCGTATTCGTAATTTTAATTATattgt
tctttaaaaagatgatagaatttttaaatttattagaACTTATTATTTGT
GTGTTTGGGAGAAGAGATTAGTTTTTGTGGGTCTAATTCCAGAGTTGAAA
TCAGTCACATTTTCTTTGTGCAAGGTTTTGGTCTTGTTTTCGCCGAAGAT
ACTATTTTCGCTATTCTATGAAAATTAACTTATGTCACCTAATCTGTGAG
GTCATTTTTGTGAAGACTGAATGACTGGAATTATTCAACGAATTGAACCT
TGGTAGAGGTTTTCGAGTCATTGTATTTTCCGGGTGTGTTGTAATTATGT
TTTAAGTACCTGTACTACTCATACAAAATTATCTTGACGAAAATACACTC
TGTTCCGCTATGATTTTCTTATTGATGCATTCTTGTTTGaggaaagaaaa
cttttttgttgataatttttgtttactttttttgtgatttttaataTATT
TCGTACATCAGATTATTATTTATACttgtgtttctttttataaatatttc
atttcatatttttaattttcgaattttgattCATAATATGCAATATAGCT
TGTACATAATACTTGAACAAATTAAGCTGTAGTTACTTGAAATTGAACCT
TCCCAATGCTTGGAT

Coding sequence (CDS) from alignment at scaffold_350:143080..148494+

>TCONS_00060947 ID=TCONS_00060947|Name=TCONS_00060947|organism=Clytia hemisphaerica|type=CDS|length=5652bp|location=Sequence derived from alignment at scaffold_350:143080..148494+ (Clytia hemisphaerica)
TCCACAATGAGCACAGAAAAGAAGAAAGGGACGAATATAAATCCTGTTGT
GAAATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCGA
AAGAGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctttaatgGCAAG
AAGCTCTCCAACCACgattttgtgaaaatgtttgAAACCATTCGCTCAAT
TTCTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAACT
ACGAGGACGCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACATC
AAAGAAAAACCAGGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGAC
CAATTTCTATCAGAACATTTTACCAACACTTCAAGCCTTATTCTGTTCCA
TTCCTATGAAAGTACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGTT
TTATTGAAACTGAAGATTGAAGAAGCCCTGAATATCAATGATCACCATAT
ACCCAAATCCATCATGCAAATGTTTTGTGTTCTTTTTCAAGCATCACGAG
ACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACTAGAACGATTGATG
GCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTCTACTTACACCACC
ACAAAGAAGCCATCATCATAATAGCCAACATTCTCATCATAAGAAACAAG
ACAAGTTGACACCCTCCTCTTCCATAGGATCCGGAGCAAGTACACCGGAA
ACCGAAGTGAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTT
TGAAGAACTCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCG
GCCCACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAA
TCTTTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATCCACAAT
GAGCACAGAAAAGAAGAAAGGGACGAATATAAATCCTGTTGTGAAATCAC
AGAAGAAGATCACTGGCAAAAAAGATGATTTCAGTAATTCGAAAGAGTGG
AAAAGTGTTGTCAGTGGATGCacaaatatctttaatgGCAAGAAGCTCTC
CAACCACgattttgtgaaaatgtttgAAACCATTCGCTCAATTTCTTCTT
CGGCTGACGTAGGTTTAGCTAACGAAAGTGTCTCCCGTAACTACGAGGAC
GCCATTTTGTCACGTGGGATGATCATATTGAGAGAAGACATCAAAGAAAA
ACCAGGTCATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAATTTCT
ATCAGAACATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTCCTATG
AAAGTACGTGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTATTGAA
ACTGAAGATTGAAGAAGCCCTGAATATCAATGATCACCATATACCCAAAT
CCATCATGCAAATGTTTTGTGTTCTTTTTCAAGCATCACGAGACCCAGAG
GAACGCGAGCGGAAGAATTTTGATGAACTAGAACGATTGATGGCTCGTGT
GATCAATCCCTTCTTGGGAAGTAAAGGTCTACTTACACCACCACAAAGAA
GCCATCATCATAATAGCCAACATTCTCATCATAAGAAACAAGACAAGTTG
ACACCCTCCTCTTCCATAGGATCCGGAGCAAGTACACCGGAAACCGAAGT
GAAATCGAATCAATGTTCTGCAGCCGATGATAATGATGATTTTGAAGAAC
TCCTGAACTTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGCCCACAA
CGTCTATCAGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATCTTTGGC
AAGTCTCATCGCGGATGGGTTTGAACTTGGTTGATCCACAATGAGCACAG
AAAAGAAGAAAGGGACGAATATAAATCCTGTTGTGAAATCACAGAAGAAG
ATCACTGGCAAAAAAGATGATTTCAGTAATTCGAAAGAGTGGAAAAGTGT
TGTCAGTGGATGCacaaatatctttaatgGCAAGAAGCTCTCCAACCACg
attttgtgaaaatgtttgAAACCATTCGCTCAATTTCTTCTTCGGCTGAC
GTAGGTTTAGCTAACGAAAGTGTCTCCCGTAACTACGAGGACGCCATTTT
GTCACGTGGGATGATCATATTGAGAGAAGACATCAAAGAAAAACCAGGTC
ATGCGCTGCTTCACAAATTAGGTGAAGTCTGGACCAATTTCTATCAGAAC
ATTTTACCAACACTTCAAGCCTTATTCTGTTCCATTCCTATGAAAGTACG
TGAAGTAACTCTCTTGGCGTTCAGAGATAATGTTTTATTGAAACTGAAGA
TTGAAGAAGCCCTGAATATCAATGATCACCATATACCCAAATCCATCATG
CAAATGTTTTGTGTTCTTTTTCAAGCATCACGAGACCCAGAGGAACGCGA
GCGGAAGAATTTTGATGAACTAGAACGATTGATGGCTCGTGTGATCAATC
CCTTCTTGGGAAGTAAAGGTCTACTTACACCACCACAAAGAAGCCATCAT
CATAATAGCCAACATTCTCATCATAAGAAACAAGACAAGTTGACACCCTC
CTCTTCCATAGGATCCGGAGCAAGTACACCGGAAACCGAAGTGAAATCGA
ATCAATGTTCTGCAGCCGATGATAATGATGATTTTGAAGAACTCCTGAAC
TTCCGACGACAAAATCTTAACCGGTTCGCTGGCGGCCCACAACGTCTATC
AGCTGTCGATGAACAAAAAGGCGGAATTTCTGAATCTTTGGCAAGTCTCA
TCGCGGATGGGTTTGAACTTGGTTGATCCACAATGAGCACAGAAAAGAAG
AAAGGGACGAATATAAATCCTGTTGTGAAATCACAGAAGAAGATCACTGG
CAAAAAAGATGATTTCAGTAATTCGAAAGAGTGGAAAAGTGTTGTCAGTG
GATGCacaaatatctttaatgGCAAGAAGCTCTCCAACCACgattttgtg
aaaatgtttgAAACCATTCGCTCAATTTCTTCTTCGGCTGACGTAGGTTT
AGCTAACGAAAGTGTCTCCCGTAACTACGAGGACGCCATTTTGTCACGTG
GGATGATCATATTGAGAGAAGACATCAAAGAAAAACCAGGTCATGCGCTG
CTTCACAAATTAGGTGAAGTCTGGACCAATTTCTATCAGAACATTTTACC
AACACTTCAAGCCTTATTCTGTTCCATTCCTATGAAAGTACGTGAAGTAA
CTCTCTTGGCGTTCAGAGATAATGTTTTATTGAAACTGAAGATTGAAGAA
GCCCTGAATATCAATGATCACCATATACCCAAATCCATCATGCAAATGTT
TTGTGTTCTTTTTCAAGCATCACGAGACCCAGAGGAACGCGAGCGGAAGA
ATTTTGATGAACTAGAACGATTGATGGCTCGTGTGATCAATCCCTTCTTG
GGAAGTAAAGGTCTACTTACACCACCACAAAGAAGCCATCATCATAATAG
CCAACATTCTCATCATAAGAAACAAGACAAGTTGACACCCTCCTCTTCCA
TAGGATCCGGAGCAAGTACACCGGAAACCGAAGTGAAATCGAATCAATGT
TCTGCAGCCGATGATAATGATGATTTTGAAGAACTCCTGAACTTCCGACG
ACAAAATCTTAACCGGTTCGCTGGCGGCCCACAACGTCTATCAGCTGTCG
ATGAACAAAAAGGCGGAATTTCTGAATCTTTGGCAAGTCTCATCGCGGAT
GGGTTTGAACTTGGTTGATCCACAATGAGCACAGAAAAGAAGAAAGGGAC
GAATATAAATCCTGTTGTGAAATCACAGAAGAAGATCACTGGCAAAAAAG
ATGATTTCAGTAATTCGAAAGAGTGGAAAAGTGTTGTCAGTGGATGCaca
aatatctttaatgGCAAGAAGCTCTCCAACCACgattttgtgaaaatgtt
tgAAACCATTCGCTCAATTTCTTCTTCGGCTGACGTAGGTTTAGCTAACG
AAAGTGTCTCCCGTAACTACGAGGACGCCATTTTGTCACGTGGGATGATC
ATATTGAGAGAAGACATCAAAGAAAAACCAGGTCATGCGCTGCTTCACAA
ATTAGGTGAAGTCTGGACCAATTTCTATCAGAACATTTTACCAACACTTC
AAGCCTTATTCTGTTCCATTCCTATGAAAGTACGTGAAGTAACTCTCTTG
GCGTTCAGAGATAATGTTTTATTGAAACTGAAGATTGAAGAAGCCCTGAA
TATCAATGATCACCATATACCCAAATCCATCATGCAAATGTTTTGTGTTC
TTTTTCAAGCATCACGAGACCCAGAGGAACGCGAGCGGAAGAATTTTGAT
GAACTAGAACGATTGATGGCTCGTGTGATCAATCCCTTCTTGGGAAGTAA
AGGTCTACTTACACCACCACAAAGAAGCCATCATCATAATAGCCAACATT
CTCATCATAAGAAACAAGACAAGTTGACACCCTCCTCTTCCATAGGATCC
GGAGCAAGTACACCGGAAACCGAAGTGAAATCGAATCAATGTTCTGCAGC
CGATGATAATGATGATTTTGAAGAACTCCTGAACTTCCGACGACAAAATC
TTAACCGGTTCGCTGGCGGCCCACAACGTCTATCAGCTGTCGATGAACAA
AAAGGCGGAATTTCTGAATCTTTGGCAAGTCTCATCGCGGATGGGTTTGA
ACTTGGTTGATCCACAATGAGCACAGAAAAGAAGAAAGGGACGAATATAA
ATCCTGTTGTGAAATCACAGAAGAAGATCACTGGCAAAAAAGATGATTTC
AGTAATTCGAAAGAGTGGAAAAGTGTTGTCAGTGGATGCacaaatatctt
taatgGCAAGAAGCTCTCCAACCACgattttgtgaaaatgtttgAAACCA
TTCGCTCAATTTCTTCTTCGGCTGACGTAGGTTTAGCTAACGAAAGTGTC
TCCCGTAACTACGAGGACGCCATTTTGTCACGTGGGATGATCATATTGAG
AGAAGACATCAAAGAAAAACCAGGTCATGCGCTGCTTCACAAATTAGGTG
AAGTCTGGACCAATTTCTATCAGAACATTTTACCAACACTTCAAGCCTTA
TTCTGTTCCATTCCTATGAAAGTACGTGAAGTAACTCTCTTGGCGTTCAG
AGATAATGTTTTATTGAAACTGAAGATTGAAGAAGCCCTGAATATCAATG
ATCACCATATACCCAAATCCATCATGCAAATGTTTTGTGTTCTTTTTCAA
GCATCACGAGACCCAGAGGAACGCGAGCGGAAGAATTTTGATGAACTAGA
ACGATTGATGGCTCGTGTGATCAATCCCTTCTTGGGAAGTAAAGGTCTAC
TTACACCACCACAAAGAAGCCATCATCATAATAGCCAACATTCTCATCAT
AAGAAACAAGACAAGTTGACACCCTCCTCTTCCATAGGATCCGGAGCAAG
TACACCGGAAACCGAAGTGAAATCGAATCAATGTTCTGCAGCCGATGATA
ATGATGATTTTGAAGAACTCCTGAACTTCCGACGACAAAATCTTAACCGG
TTCGCTGGCGGCCCACAACGTCTATCAGCTGTCGATGAACAAAAAGGCGG
AATTTCTGAATCTTTGGCAAGTCTCATCGCGGATGGGTTTGAACTTGGTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038259XLOC_038259Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060947-proteinTCONS_00060947-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060947-exon-scaffold_350-1491911889:143080..143225TCONS_00060947-exon-scaffold_350-1491911889:143080..143225Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:143080..143225TCONS_00060947-exon-scaffold_350-1510915933:143080..143225Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:143080..143225TCONS_00060947-exon-scaffold_350-1575043694:143080..143225Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1491911889:145227..145394TCONS_00060947-exon-scaffold_350-1491911889:145227..145394Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:145227..145394TCONS_00060947-exon-scaffold_350-1510915933:145227..145394Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:145227..145394TCONS_00060947-exon-scaffold_350-1575043694:145227..145394Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1491911889:145631..145857TCONS_00060947-exon-scaffold_350-1491911889:145631..145857Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:145631..145857TCONS_00060947-exon-scaffold_350-1510915933:145631..145857Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:145631..145857TCONS_00060947-exon-scaffold_350-1575043694:145631..145857Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1491911889:146383..146500TCONS_00060947-exon-scaffold_350-1491911889:146383..146500Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:146383..146500TCONS_00060947-exon-scaffold_350-1510915933:146383..146500Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:146383..146500TCONS_00060947-exon-scaffold_350-1575043694:146383..146500Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1491911889:146567..146665TCONS_00060947-exon-scaffold_350-1491911889:146567..146665Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:146567..146665TCONS_00060947-exon-scaffold_350-1510915933:146567..146665Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:146567..146665TCONS_00060947-exon-scaffold_350-1575043694:146567..146665Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1491911889:147235..148494TCONS_00060947-exon-scaffold_350-1491911889:147235..148494Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1510915933:147235..148494TCONS_00060947-exon-scaffold_350-1510915933:147235..148494Clytia hemisphaericaexon
TCONS_00060947-exon-scaffold_350-1575043694:147235..148494TCONS_00060947-exon-scaffold_350-1575043694:147235..148494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_350supercontigscaffold_350:143080..148494 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.478	58.3683	43.3229	38.887	33.9378	28.5584	29.2865	29.3803	23.605	25.2079	26.4567	21.2647	12.919	12.1418	13.3969	16.9224	20.3612	22.5446	18.1376	19.765	19.4927	20.7545	17.6069	18.808	10.007	9.54136	20.357	16.4448	16.5295	14.1272
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013745Bit61/PRR5
IPR016159Cullin_repeat-like_dom
Blast
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BLAST of TCONS_00060947 vs. Swiss-Prot (Human)
Match: PRR5L (Proline-rich protein 5-like OS=Homo sapiens GN=PRR5L PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.591e-25
Identity = 63/204 (30.88%), Postives = 114/204 (55.88%), Query Frame = 2 
Query:   41 NPVVKSQKKITGKKD--DFSNSKEWKSVVSGCTNIFNGKKLSNHDFVKMFETIRSISSSADVGLANESVSRNYEDAILSRGMIILREDIKEKPGHALLHKLGEVWTNFYQNILPTLQALFCSIP---MKVREVTLLAFRDNVLLKLKIEEALNINDHHIPKSIMQMFCVLFQASRDPEERERKNFDELERLMARVINPFLGSKG 637
            +PV+    +    +     S+S  W SV +   N+F G  L +++   + E IR +  S ++G     ++  +++ +L++G+  + E IK   G   +  L EVW +F+   LPTLQA+F  +    + +R+++LL FRD VLLK+K+ + L +    +P SI+QM  +L Q+  +P     +++ +LE L+ +V++PFLG  G
Sbjct:   29 SPVLSDLPRFQAARQALQLSSSSAWNSVQTAVINVFKGGGLQSNELYALNENIRRLLKS-ELG---SFITDYFQNQLLAKGLFFVEEKIKLCEGENRIEVLAEVWDHFFTETLPTLQAIFYPVQGQELTIRQISLLGFRDLVLLKVKLGDLLLLAQSKLPSSIVQMLLIL-QSVHEPTG-PSESYLQLEELVKQVVSPFLGISG 226
The following BLAST results are available for this feature:
BLAST of TCONS_00060947 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRR5L2.591e-2530.88Proline-rich protein 5-like OS=Homo sapiens GN=PRR... [more]
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